RNA–Protein interactions for RNA: ENST00000263066.10

LDB3-201, Transcript of LIM domain binding 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDB3, Length 3,873 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-201ENST00000263066 GGT6Q6P531 493 aa11.22□□□□□ -0.61
LDB3-201ENST00000263066 LAMC3Q9Y6N6 1575 aa11.22□□□□□ -0.61
LDB3-201ENST00000263066 ARAP1Q96P48 1450 aa11.21□□□□□ -0.61
LDB3-201ENST00000263066 HNRNPMP52272 730 aaKnown RBP eCLIP11.21□□□□□ -0.61
LDB3-201ENST00000263066 DNMBPQ6XZF7 1577 aa11.21□□□□□ -0.62
LDB3-201ENST00000263066 FAM69CQ0P6D2 419 aa11.21□□□□□ -0.62
LDB3-201ENST00000263066 IPO9Q96P70 1041 aaKnown RBP11.21□□□□□ -0.62
LDB3-201ENST00000263066 PTPRGP23470 1445 aa11.2□□□□□ -0.62
LDB3-201ENST00000263066 PPM1GO15355 546 aaPredicted RBP11.2□□□□□ -0.62
LDB3-201ENST00000263066 FOXD1Q16676 465 aa11.19□□□□□ -0.62
LDB3-201ENST00000263066 PPP4R2Q9NY27 417 aa11.19□□□□□ -0.62
LDB3-201ENST00000263066 CARMIL2Q6F5E8 1435 aa11.19□□□□□ -0.62
LDB3-201ENST00000263066 THOC2Q8NI27 1593 aaKnown RBP11.19□□□□□ -0.62
LDB3-201ENST00000263066 SNAPC4Q5SXM2 1469 aa11.19□□□□□ -0.62
LDB3-201ENST00000263066 ERICH3Q5RHP9 1530 aa11.19□□□□□ -0.62
LDB3-201ENST00000263066 RBM10P98175 930 aaKnown RBP11.18□□□□□ -0.62
LDB3-201ENST00000263066 PDIA4P13667 645 aaKnown RBP11.16□□□□□ -0.62
LDB3-201ENST00000263066 PNNQ9H307 717 aaKnown RBP11.15□□□□□ -0.62
LDB3-201ENST00000263066 PBRM1Q86U86 1689 aa11.15□□□□□ -0.62
LDB3-201ENST00000263066 ZNF644Q9H582 1327 aaPredicted RBP11.15□□□□□ -0.62
LDB3-201ENST00000263066 ABCA10Q8WWZ4 1543 aa11.14□□□□□ -0.63
LDB3-201ENST00000263066 GRIN2BQ13224 1484 aa11.14□□□□□ -0.63
LDB3-201ENST00000263066 GSE1Q14687 1217 aa11.14□□□□□ -0.63
LDB3-201ENST00000263066 CCNB3Q8WWL7 1395 aa11.13□□□□□ -0.63
LDB3-201ENST00000263066 PRG4Q92954 1404 aaPredicted RBP11.13□□□□□ -0.63
LDB3-201ENST00000263066 ARID3AQ99856 593 aa11.13□□□□□ -0.63
LDB3-201ENST00000263066 BCL11BQ9C0K0 894 aaPredicted RBP11.13□□□□□ -0.63
LDB3-201ENST00000263066 CTTNBP2Q8WZ74 1663 aa11.11□□□□□ -0.63
LDB3-201ENST00000263066 NUTM2DQ5VT03 806 aaPredicted RBP11.1□□□□□ -0.63
LDB3-201ENST00000263066 SIN3AQ96ST3 1273 aa11.1□□□□□ -0.63
LDB3-201ENST00000263066 IFT140Q96RY7 1462 aa11.1□□□□□ -0.63
LDB3-201ENST00000263066 ARHGAP35Q9NRY4 1499 aa11.1□□□□□ -0.63
LDB3-201ENST00000263066 USP35Q9P2H5 1018 aa11.08□□□□□ -0.64
LDB3-201ENST00000263066 FHAD1B1AJZ9 1412 aa11.08□□□□□ -0.64
LDB3-201ENST00000263066 AEBP2Q6ZN18 517 aaPredicted RBP11.08□□□□□ -0.64
LDB3-201ENST00000263066 WDR62O43379 1518 aa11.07□□□□□ -0.64
LDB3-201ENST00000263066 AFAP1Q8N556 730 aa11.07□□□□□ -0.64
LDB3-201ENST00000263066 SAMD9Q5K651 1589 aa11.06□□□□□ -0.64
LDB3-201ENST00000263066 KIF3BO15066 747 aa11.06□□□□□ -0.64
LDB3-201ENST00000263066 EFCAB2Q5VUJ9 269 aa11.06□□□□□ -0.64
LDB3-201ENST00000263066 FAM9BQ8IZU0 186 aa11.05□□□□□ -0.64
LDB3-201ENST00000263066 VPS8Q8N3P4 1428 aa11.05□□□□□ -0.64
LDB3-201ENST00000263066 SENP3-EIF4A1A0A087X0R7 540 aa11.05□□□□□ -0.64
LDB3-201ENST00000263066 RAPGEF3O95398 923 aa11.05□□□□□ -0.64
LDB3-201ENST00000263066 FGD1P98174 961 aa11.05□□□□□ -0.64
LDB3-201ENST00000263066 FRAT1Q92837 279 aaPredicted RBP11.04□□□□□ -0.64
LDB3-201ENST00000263066 PPP1R15AO75807 674 aaPredicted RBP11.02□□□□□ -0.65
LDB3-201ENST00000263066 TNNT2P45379 298 aaPredicted RBP11.02□□□□□ -0.65
LDB3-201ENST00000263066 RRP9O43818 475 aaKnown RBP11.02□□□□□ -0.65
LDB3-201ENST00000263066 CDK11BP21127 795 aaKnown RBP11.02□□□□□ -0.65
LDB3-201ENST00000263066 FAM43AQ8N2R8 423 aa11.02□□□□□ -0.65
LDB3-201ENST00000263066 FMN1Q68DA7 1419 aa11.01□□□□□ -0.65
LDB3-201ENST00000263066 SAFB2Q14151 953 aaKnown RBP eCLIP11.01□□□□□ -0.65
LDB3-201ENST00000263066 CFAP43Q8NDM7 1665 aa11□□□□□ -0.65
LDB3-201ENST00000263066 AAMPQ13685 434 aa11□□□□□ -0.65
LDB3-201ENST00000263066 CUL7Q14999 1698 aa11□□□□□ -0.65
LDB3-201ENST00000263066 MAGI3Q5TCQ9 1506 aa10.99□□□□□ -0.65
LDB3-201ENST00000263066 C14orf37Q86TY3 774 aa10.99□□□□□ -0.65
LDB3-201ENST00000263066 BBXQ8WY36 941 aaPredicted RBP10.98□□□□□ -0.65
LDB3-201ENST00000263066 DDRGK1Q96HY6 314 aa10.98□□□□□ -0.65
LDB3-201ENST00000263066 EIF4G3O43432 1585 aaKnown RBP10.98□□□□□ -0.65
LDB3-201ENST00000263066 PCF11O94913 1555 aaKnown RBP10.98□□□□□ -0.65
LDB3-201ENST00000263066 ADAMTS12P58397 1594 aa10.98□□□□□ -0.65
LDB3-201ENST00000263066 PAXIP1Q6ZW49 1069 aaPredicted RBP10.98□□□□□ -0.65
LDB3-201ENST00000263066 TRIM44Q96DX7 344 aaPredicted RBP10.98□□□□□ -0.65
LDB3-201ENST00000263066 SLC4A3P48751 1232 aa10.97□□□□□ -0.65
LDB3-201ENST00000263066 RGS3P49796 1198 aa10.97□□□□□ -0.65
LDB3-201ENST00000263066 SPAG9O60271 1321 aaKnown RBP10.97□□□□□ -0.65
LDB3-201ENST00000263066 CANXP27824 592 aaKnown RBP10.97□□□□□ -0.65
LDB3-201ENST00000263066 TONSLQ96HA7 1378 aa10.97□□□□□ -0.65
LDB3-201ENST00000263066 PLB1Q6P1J6 1458 aa10.96□□□□□ -0.65
LDB3-201ENST00000263066 NCLP19338 710 aaKnown RBP10.95□□□□□ -0.66
LDB3-201ENST00000263066 PKD2Q13563 968 aa10.94□□□□□ -0.66
LDB3-201ENST00000263066 C11orf95C9JLR9 678 aaPredicted RBP10.94□□□□□ -0.66
LDB3-201ENST00000263066 NFKBIBQ15653 356 aa10.94□□□□□ -0.66
LDB3-201ENST00000263066 GRIN2AQ12879 1464 aa10.93□□□□□ -0.66
LDB3-201ENST00000263066 ZBTB7CA1YPR0 619 aa10.93□□□□□ -0.66
LDB3-201ENST00000263066 STK26Q9P289 416 aa10.93□□□□□ -0.66
LDB3-201ENST00000263066 NUTM2FA1L443 756 aa10.92□□□□□ -0.66
LDB3-201ENST00000263066 CHMP4BQ9H444 224 aaKnown RBP10.92□□□□□ -0.66
LDB3-201ENST00000263066 SYNJ2O15056 1496 aa10.92□□□□□ -0.66
LDB3-201ENST00000263066 WASHC2CQ9Y4E1 1318 aa10.91□□□□□ -0.66
LDB3-201ENST00000263066 CEP170Q5SW79 1584 aa10.91□□□□□ -0.66
LDB3-201ENST00000263066 L1TD1Q5T7N2 865 aaKnown RBP10.91□□□□□ -0.66
LDB3-201ENST00000263066 DCAF11Q8TEB1 546 aa10.9□□□□□ -0.66
LDB3-201ENST00000263066 TAF7LQ5H9L4 462 aa10.9□□□□□ -0.66
LDB3-201ENST00000263066 NUP155O75694 1391 aa10.9□□□□□ -0.67
LDB3-201ENST00000263066 LMOD2Q6P5Q4 547 aa10.89□□□□□ -0.67
LDB3-201ENST00000263066 GZF1Q9H116 711 aaPredicted RBP10.89□□□□□ -0.67
LDB3-201ENST00000263066 PHLDB1Q86UU1 1377 aa10.89□□□□□ -0.67
LDB3-201ENST00000263066 CDK13Q14004 1512 aaKnown RBP10.89□□□□□ -0.67
LDB3-201ENST00000263066 TIAM1Q13009 1591 aa10.88□□□□□ -0.67
LDB3-201ENST00000263066 CCER2I3L3R5 266 aa10.88□□□□□ -0.67
LDB3-201ENST00000263066 FAM13BQ9NYF5 915 aa10.88□□□□□ -0.67
LDB3-201ENST00000263066 NAP1L2Q9ULW6 460 aaPredicted RBP10.88□□□□□ -0.67
LDB3-201ENST00000263066 MAPK8IP2Q13387 824 aaPredicted RBP10.87□□□□□ -0.67
LDB3-201ENST00000263066 ANP32BQ92688 251 aaKnown RBP10.87□□□□□ -0.67
LDB3-201ENST00000263066 ZHX1Q9UKY1 873 aaPredicted RBP10.87□□□□□ -0.67
LDB3-201ENST00000263066 SOX12O15370 315 aa10.87□□□□□ -0.67
LDB3-201ENST00000263066 MRS2Q9HD23 443 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms