RNA–Protein interactions for RNA: ENST00000241312.8

CSMD2-201, Transcript of CUB and Sushi multiple domains 2, humanhuman

TSL 1 (best)

Gene CSMD2, Length 13,108 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD2-201ENST00000241312 CCER2I3L3R5 266 aa8.54□□□□□ -1.04
CSMD2-201ENST00000241312 SIN3AQ96ST3 1273 aa8.54□□□□□ -1.04
CSMD2-201ENST00000241312 CC2D1BQ5T0F9 858 aaKnown RBP8.53□□□□□ -1.04
CSMD2-201ENST00000241312 IPO8O15397 1037 aaKnown RBP8.53□□□□□ -1.04
CSMD2-201ENST00000241312 TMF1P82094 1093 aa8.52□□□□□ -1.05
CSMD2-201ENST00000241312 USP35Q9P2H5 1018 aa8.52□□□□□ -1.05
CSMD2-201ENST00000241312 RBM19Q9Y4C8 960 aaKnown RBP8.52□□□□□ -1.05
CSMD2-201ENST00000241312 CCDC34Q96HJ3 373 aa8.52□□□□□ -1.05
CSMD2-201ENST00000241312 ARHGAP35Q9NRY4 1499 aa8.52□□□□□ -1.05
CSMD2-201ENST00000241312 EIF3AQ14152 1382 aaKnown RBP8.52□□□□□ -1.05
CSMD2-201ENST00000241312 TNNT3P45378 269 aaPredicted RBP8.52□□□□□ -1.05
CSMD2-201ENST00000241312 TIMELESSQ9UNS1 1208 aa8.52□□□□□ -1.05
CSMD2-201ENST00000241312 GOLGA6L1Q8N7Z2 621 aa8.51□□□□□ -1.05
CSMD2-201ENST00000241312 U2SURPO15042 1029 aaKnown RBP8.51□□□□□ -1.05
CSMD2-201ENST00000241312 PHF14O94880 888 aa8.51□□□□□ -1.05
CSMD2-201ENST00000241312 CALD1Q05682 793 aaKnown RBP8.51□□□□□ -1.05
CSMD2-201ENST00000241312 KCNH8Q96L42 1107 aa8.5□□□□□ -1.05
CSMD2-201ENST00000241312 TPM4P67936 248 aa8.49□□□□□ -1.05
CSMD2-201ENST00000241312 GZF1Q9H116 711 aaPredicted RBP8.49□□□□□ -1.05
CSMD2-201ENST00000241312 GPATCH3Q96I76 525 aa8.49□□□□□ -1.05
CSMD2-201ENST00000241312 NACADO15069 1562 aa8.49□□□□□ -1.05
CSMD2-201ENST00000241312 GOLGA6L3A6NEY3 463 aa8.49□□□□□ -1.05
CSMD2-201ENST00000241312 TCERG1O14776 1098 aaKnown RBP8.49□□□□□ -1.05
CSMD2-201ENST00000241312 CSPP1Q1MSJ5 1256 aa8.48□□□□□ -1.05
CSMD2-201ENST00000241312 SLKQ9H2G2 1235 aaPredicted RBP8.48□□□□□ -1.05
CSMD2-201ENST00000241312 RWDD1Q9H446 243 aaPredicted RBP8.48□□□□□ -1.05
CSMD2-201ENST00000241312 SETD5Q9C0A6 1442 aa8.47□□□□□ -1.05
CSMD2-201ENST00000241312 MORC1Q86VD1 984 aa8.47□□□□□ -1.05
CSMD2-201ENST00000241312 EIF4G1Q04637 1599 aaKnown RBP8.47□□□□□ -1.05
CSMD2-201ENST00000241312 CHMP4AQ9BY43 222 aa8.47□□□□□ -1.05
CSMD2-201ENST00000241312 BAZ1AQ9NRL2 1556 aaPredicted RBP8.46□□□□□ -1.05
CSMD2-201ENST00000241312 RALBP1Q15311 655 aa8.46□□□□□ -1.05
CSMD2-201ENST00000241312 LMOD2Q6P5Q4 547 aa8.46□□□□□ -1.05
CSMD2-201ENST00000241312 KAT6BQ8WYB5 2073 aa8.46□□□□□ -1.06
CSMD2-201ENST00000241312 RCAN3Q9UKA8 241 aa8.46□□□□□ -1.06
CSMD2-201ENST00000241312 ITPRIPQ8IWB1 547 aa8.45□□□□□ -1.06
CSMD2-201ENST00000241312 RSPH6AQ9H0K4 717 aa8.45□□□□□ -1.06
CSMD2-201ENST00000241312 ROCK2O75116 1388 aaKnown RBP8.45□□□□□ -1.06
CSMD2-201ENST00000241312 DDX11L8A8MPP1 907 aa8.45□□□□□ -1.06
CSMD2-201ENST00000241312 A0A0U1RQG5 324 aaPredicted RBP8.45□□□□□ -1.06
CSMD2-201ENST00000241312 RTF1Q92541 710 aaKnown RBP8.44□□□□□ -1.06
CSMD2-201ENST00000241312 ISY1Q9ULR0 285 aaKnown RBP8.44□□□□□ -1.06
CSMD2-201ENST00000241312 PHLDB1Q86UU1 1377 aa8.44□□□□□ -1.06
CSMD2-201ENST00000241312 HMMRO75330 724 aa8.44□□□□□ -1.06
CSMD2-201ENST00000241312 APBB1O00213 710 aa8.44□□□□□ -1.06
CSMD2-201ENST00000241312 VPS8Q8N3P4 1428 aa8.44□□□□□ -1.06
CSMD2-201ENST00000241312 IPO9Q96P70 1041 aaKnown RBP8.43□□□□□ -1.06
CSMD2-201ENST00000241312 HDAC5Q9UQL6 1122 aa8.43□□□□□ -1.06
CSMD2-201ENST00000241312 DCAF11Q8TEB1 546 aa8.43□□□□□ -1.06
CSMD2-201ENST00000241312 TPM3P06753 285 aa8.42□□□□□ -1.06
CSMD2-201ENST00000241312 HSP90AA2PQ14568 343 aaPredicted RBP8.42□□□□□ -1.06
CSMD2-201ENST00000241312 SETQ01105 290 aaPredicted RBP8.42□□□□□ -1.06
CSMD2-201ENST00000241312 SRPK2P78362 688 aaKnown RBP8.42□□□□□ -1.06
CSMD2-201ENST00000241312 ST18O60284 1047 aa8.42□□□□□ -1.06
CSMD2-201ENST00000241312 HDGFP51858 240 aaKnown RBP8.42□□□□□ -1.06
CSMD2-201ENST00000241312 PMFBP1Q8TBY8 1022 aa8.42□□□□□ -1.06
CSMD2-201ENST00000241312 KIF3AQ9Y496 699 aa8.42□□□□□ -1.06
CSMD2-201ENST00000241312 TSHZ2Q9NRE2 1034 aa8.41□□□□□ -1.06
CSMD2-201ENST00000241312 ERCC6Q03468 1493 aa8.41□□□□□ -1.06
CSMD2-201ENST00000241312 SPAG9O60271 1321 aaKnown RBP8.41□□□□□ -1.06
CSMD2-201ENST00000241312 NCBP3Q53F19 620 aaKnown RBP8.41□□□□□ -1.06
CSMD2-201ENST00000241312 HDGFL2Q7Z4V5 671 aaPredicted RBP8.4□□□□□ -1.06
CSMD2-201ENST00000241312 KIF16BQ96L93 1317 aa8.4□□□□□ -1.06
CSMD2-201ENST00000241312 SOX12O15370 315 aa8.4□□□□□ -1.06
CSMD2-201ENST00000241312 STK31Q9BXU1 1019 aa8.4□□□□□ -1.06
CSMD2-201ENST00000241312 HSP90B1P14625 803 aaKnown RBP8.4□□□□□ -1.06
CSMD2-201ENST00000241312 MFAP1P55081 439 aaKnown RBP8.4□□□□□ -1.07
CSMD2-201ENST00000241312 FOXD4L1Q9NU39 408 aa8.39□□□□□ -1.07
CSMD2-201ENST00000241312 FMN1Q68DA7 1419 aa8.39□□□□□ -1.07
CSMD2-201ENST00000241312 PDE3BQ13370 1112 aa8.39□□□□□ -1.07
CSMD2-201ENST00000241312 ATP6V1DQ9Y5K8 247 aa8.39□□□□□ -1.07
CSMD2-201ENST00000241312 HSPA5P11021 654 aaKnown RBP8.39□□□□□ -1.07
CSMD2-201ENST00000241312 FOXD1Q16676 465 aa8.38□□□□□ -1.07
CSMD2-201ENST00000241312 U2AF1L5P0DN76 240 aaPredicted RBP8.38□□□□□ -1.07
CSMD2-201ENST00000241312 U2AF1Q01081 240 aaKnown RBP eCLIP8.38□□□□□ -1.07
CSMD2-201ENST00000241312 RASSF8Q8NHQ8 419 aa8.38□□□□□ -1.07
CSMD2-201ENST00000241312 CENPJQ9HC77 1338 aaPredicted RBP8.37□□□□□ -1.07
CSMD2-201ENST00000241312 TRIM6-TRIM34B2RNG4 842 aa8.37□□□□□ -1.07
CSMD2-201ENST00000241312 LMOD3Q0VAK6 560 aa8.37□□□□□ -1.07
CSMD2-201ENST00000241312 SAFB2Q14151 953 aaKnown RBP eCLIP8.37□□□□□ -1.07
CSMD2-201ENST00000241312 CCDC70Q6NSX1 233 aa8.37□□□□□ -1.07
CSMD2-201ENST00000241312 SKOR2Q2VWA4 1001 aaPredicted RBP8.36□□□□□ -1.07
CSMD2-201ENST00000241312 NLRP13Q86W25 1043 aa8.36□□□□□ -1.07
CSMD2-201ENST00000241312 CHMP4CQ96CF2 233 aa8.36□□□□□ -1.07
CSMD2-201ENST00000241312 SMC4Q9NTJ3 1288 aa8.36□□□□□ -1.07
CSMD2-201ENST00000241312 GPS2Q13227 327 aa8.36□□□□□ -1.07
CSMD2-201ENST00000241312 GORABQ5T7V8 394 aa8.35□□□□□ -1.07
CSMD2-201ENST00000241312 CUX2O14529 1486 aa8.35□□□□□ -1.07
CSMD2-201ENST00000241312 FOXD4L5Q5VV16 416 aaPredicted RBP8.35□□□□□ -1.07
CSMD2-201ENST00000241312 FOXD4L4Q8WXT5 416 aaPredicted RBP8.35□□□□□ -1.07
CSMD2-201ENST00000241312 KIF15Q9NS87 1388 aa8.35□□□□□ -1.07
CSMD2-201ENST00000241312 CEP89Q96ST8 783 aa8.35□□□□□ -1.07
CSMD2-201ENST00000241312 CARMIL1Q5VZK9 1371 aa8.35□□□□□ -1.07
CSMD2-201ENST00000241312 ANKRD30AQ9BXX3 1397 aa8.35□□□□□ -1.07
CSMD2-201ENST00000241312 TPM1P09493 284 aa8.35□□□□□ -1.07
CSMD2-201ENST00000241312 RAB3GAP2Q9H2M9 1393 aa8.34□□□□□ -1.07
CSMD2-201ENST00000241312 TSR1Q2NL82 804 aaKnown RBP8.34□□□□□ -1.07
CSMD2-201ENST00000241312 NOL8Q76FK4 1167 aaKnown RBP8.34□□□□□ -1.07
CSMD2-201ENST00000241312 PKD2Q13563 968 aa8.34□□□□□ -1.07
CSMD2-201ENST00000241312 TERF2IPQ9NYB0 399 aa8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms