RNA–Protein interactions for RNA: ENST00000222402.7

UBE2D4-201, Transcript of ubiquitin conjugating enzyme E2 D4 (putative), humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UBE2D4, Length 3,974 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D4-201ENST00000222402 IQGAP2Q13576 1575 aa20.34■□□□□ 0.85
UBE2D4-201ENST00000222402 HECW1Q76N89 1606 aa20.33■□□□□ 0.85
UBE2D4-201ENST00000222402 PTPN23Q9H3S7 1636 aa20.33■□□□□ 0.85
UBE2D4-201ENST00000222402 SALL2Q9Y467 1007 aaPredicted RBP20.32■□□□□ 0.84
UBE2D4-201ENST00000222402 ANKRD30AQ9BXX3 1397 aa20.32■□□□□ 0.84
UBE2D4-201ENST00000222402 MIA2Q96PC5 1412 aa20.31■□□□□ 0.84
UBE2D4-201ENST00000222402 NUP155O75694 1391 aa20.31■□□□□ 0.84
UBE2D4-201ENST00000222402 DCAF11Q8TEB1 546 aa20.29■□□□□ 0.84
UBE2D4-201ENST00000222402 HNRNPMP52272 730 aaKnown RBP eCLIP20.28■□□□□ 0.84
UBE2D4-201ENST00000222402 IFT140Q96RY7 1462 aa20.28■□□□□ 0.84
UBE2D4-201ENST00000222402 PRKRIP1Q9H875 184 aaPredicted RBP20.27■□□□□ 0.84
UBE2D4-201ENST00000222402 ZNF608Q9ULD9 1512 aaPredicted RBP20.27■□□□□ 0.84
UBE2D4-201ENST00000222402 PRG4Q92954 1404 aaPredicted RBP20.25■□□□□ 0.83
UBE2D4-201ENST00000222402 NBPF8Q3BBV2 869 aa20.25■□□□□ 0.83
UBE2D4-201ENST00000222402 KIAA0586Q9BVV6 1533 aa20.23■□□□□ 0.83
UBE2D4-201ENST00000222402 UGGT2Q9NYU1 1516 aa20.23■□□□□ 0.83
UBE2D4-201ENST00000222402 DAPK1P53355 1430 aa20.22■□□□□ 0.83
UBE2D4-201ENST00000222402 ABCA5Q8WWZ7 1642 aa20.22■□□□□ 0.83
UBE2D4-201ENST00000222402 CCDC7Q96M83 1385 aa20.22■□□□□ 0.83
UBE2D4-201ENST00000222402 THOC2Q8NI27 1593 aaKnown RBP20.21■□□□□ 0.83
UBE2D4-201ENST00000222402 KIF21AQ7Z4S6 1674 aa20.2■□□□□ 0.82
UBE2D4-201ENST00000222402 RBM19Q9Y4C8 960 aaKnown RBP20.19■□□□□ 0.82
UBE2D4-201ENST00000222402 KIF7Q2M1P5 1343 aa20.19■□□□□ 0.82
UBE2D4-201ENST00000222402 B4GALNT3Q6L9W6 998 aa20.18■□□□□ 0.82
UBE2D4-201ENST00000222402 SAMD9Q5K651 1589 aa20.18■□□□□ 0.82
UBE2D4-201ENST00000222402 PPP4R2Q9NY27 417 aa20.18■□□□□ 0.82
UBE2D4-201ENST00000222402 CNTLNQ9NXG0 1405 aa20.17■□□□□ 0.82
UBE2D4-201ENST00000222402 CCDC136Q96JN2 1154 aa20.17■□□□□ 0.82
UBE2D4-201ENST00000222402 TROQ12816 1431 aaPredicted RBP20.17■□□□□ 0.82
UBE2D4-201ENST00000222402 CCDC184Q52MB2 194 aa20.16■□□□□ 0.82
UBE2D4-201ENST00000222402 ABCC5O15440 1437 aa20.16■□□□□ 0.82
UBE2D4-201ENST00000222402 C11orf95C9JLR9 678 aaPredicted RBP20.15■□□□□ 0.82
UBE2D4-201ENST00000222402 USP47Q96K76 1375 aa20.14■□□□□ 0.82
UBE2D4-201ENST00000222402 ANKRD50Q9ULJ7 1429 aa20.13■□□□□ 0.81
UBE2D4-201ENST00000222402 PLB1Q6P1J6 1458 aa20.13■□□□□ 0.81
UBE2D4-201ENST00000222402 ANP32EQ9BTT0 268 aa20.12■□□□□ 0.81
UBE2D4-201ENST00000222402 ROCK1Q13464 1354 aa20.12■□□□□ 0.81
UBE2D4-201ENST00000222402 ANKRD30BQ9BXX2 1392 aa20.12■□□□□ 0.81
UBE2D4-201ENST00000222402 GRIN2AQ12879 1464 aa20.12■□□□□ 0.81
UBE2D4-201ENST00000222402 MAGI3Q5TCQ9 1506 aa20.12■□□□□ 0.81
UBE2D4-201ENST00000222402 PTPRGP23470 1445 aa20.11■□□□□ 0.81
UBE2D4-201ENST00000222402 ST20-MTHFSA0A0A6YYL1 179 aa20.1■□□□□ 0.81
UBE2D4-201ENST00000222402 ADAMTS12P58397 1594 aa20.09■□□□□ 0.81
UBE2D4-201ENST00000222402 ROCK2O75116 1388 aaKnown RBP20.08■□□□□ 0.8
UBE2D4-201ENST00000222402 AKNAQ7Z591 1439 aa20.08■□□□□ 0.8
UBE2D4-201ENST00000222402 TCOF1Q13428 1488 aaKnown RBP20.08■□□□□ 0.8
UBE2D4-201ENST00000222402 TARBP1Q13395 1621 aaKnown RBP20.06■□□□□ 0.8
UBE2D4-201ENST00000222402 KIF15Q9NS87 1388 aa20.06■□□□□ 0.8
UBE2D4-201ENST00000222402 NUP153P49790 1475 aaKnown RBP20.05■□□□□ 0.8
UBE2D4-201ENST00000222402 WDR62O43379 1518 aa20.05■□□□□ 0.8
UBE2D4-201ENST00000222402 CC2D1BQ5T0F9 858 aaKnown RBP20.04■□□□□ 0.8
UBE2D4-201ENST00000222402 ZBED9Q6R2W3 1325 aa20.04■□□□□ 0.8
UBE2D4-201ENST00000222402 KIAA1107Q9UPP5 1409 aa20.03■□□□□ 0.8
UBE2D4-201ENST00000222402 CAMSAP2Q08AD1 1489 aa20.03■□□□□ 0.8
UBE2D4-201ENST00000222402 CHGAP10645 457 aaKnown RBP20.02■□□□□ 0.8
UBE2D4-201ENST00000222402 RPRD2Q5VT52 1461 aaKnown RBP20.02■□□□□ 0.8
UBE2D4-201ENST00000222402 NCOA1Q15788 1441 aa20.01■□□□□ 0.79
UBE2D4-201ENST00000222402 PBRM1Q86U86 1689 aa20.01■□□□□ 0.79
UBE2D4-201ENST00000222402 RSPH4AQ5TD94 716 aa20.01■□□□□ 0.79
UBE2D4-201ENST00000222402 ERICH6BQ5W0A0 696 aa20■□□□□ 0.79
UBE2D4-201ENST00000222402 SYNJ2O15056 1496 aa19.99■□□□□ 0.79
UBE2D4-201ENST00000222402 C9orf84Q5VXU9 1444 aa19.99■□□□□ 0.79
UBE2D4-201ENST00000222402 MAGI1Q96QZ7 1491 aaPredicted RBP19.97■□□□□ 0.79
UBE2D4-201ENST00000222402 ANP32AP39687 249 aaKnown RBP19.97■□□□□ 0.79
UBE2D4-201ENST00000222402 RAPGEF6Q8TEU7 1601 aa19.96■□□□□ 0.79
UBE2D4-201ENST00000222402 NUDCQ9Y266 331 aa19.96■□□□□ 0.79
UBE2D4-201ENST00000222402 CCDC144AA2RUR9 1427 aa19.96■□□□□ 0.79
UBE2D4-201ENST00000222402 DISP1Q96F81 1524 aa19.96■□□□□ 0.79
UBE2D4-201ENST00000222402 KIAA0556O60303 1618 aa19.96■□□□□ 0.79
UBE2D4-201ENST00000222402 NPM2Q86SE8 214 aaKnown RBP19.96■□□□□ 0.79
UBE2D4-201ENST00000222402 GPATCH8Q9UKJ3 1502 aaKnown RBP19.95■□□□□ 0.78
UBE2D4-201ENST00000222402 EFCAB2Q5VUJ9 269 aa19.95■□□□□ 0.78
UBE2D4-201ENST00000222402 TMF1P82094 1093 aa19.94■□□□□ 0.78
UBE2D4-201ENST00000222402 WDR43Q15061 677 aaKnown RBP eCLIP19.94■□□□□ 0.78
UBE2D4-201ENST00000222402 ARHGEF11O15085 1522 aa19.94■□□□□ 0.78
UBE2D4-201ENST00000222402 RALBP1Q15311 655 aa19.94■□□□□ 0.78
UBE2D4-201ENST00000222402 KTN1Q86UP2 1357 aaKnown RBP19.92■□□□□ 0.78
UBE2D4-201ENST00000222402 KNSTRNQ9Y448 316 aa19.92■□□□□ 0.78
UBE2D4-201ENST00000222402 KDM6BO15054 1643 aa19.91■□□□□ 0.78
UBE2D4-201ENST00000222402 NPM1P06748 294 aaKnown RBP eCLIP19.88■□□□□ 0.77
UBE2D4-201ENST00000222402 MYBBP1AQ9BQG0 1328 aaKnown RBP19.88■□□□□ 0.77
UBE2D4-201ENST00000222402 DAXXQ9UER7 740 aaPredicted RBP19.88■□□□□ 0.77
UBE2D4-201ENST00000222402 NLRP13Q86W25 1043 aa19.87■□□□□ 0.77
UBE2D4-201ENST00000222402 ARID4BQ4LE39 1312 aaPredicted RBP19.87■□□□□ 0.77
UBE2D4-201ENST00000222402 RTL5Q5HYW3 569 aaPredicted RBP19.87■□□□□ 0.77
UBE2D4-201ENST00000222402 EIF4G3O43432 1585 aaKnown RBP19.86■□□□□ 0.77
UBE2D4-201ENST00000222402 NBPF1Q3BBV0 1214 aa19.85■□□□□ 0.77
UBE2D4-201ENST00000222402 GCC2Q8IWJ2 1684 aa19.85■□□□□ 0.77
UBE2D4-201ENST00000222402 LRRIQ1Q96JM4 1722 aa19.84■□□□□ 0.77
UBE2D4-201ENST00000222402 SPAG9O60271 1321 aaKnown RBP19.84■□□□□ 0.77
UBE2D4-201ENST00000222402 DNMT1P26358 1616 aaKnown RBP19.84■□□□□ 0.77
UBE2D4-201ENST00000222402 CDCA8Q53HL2 280 aa19.83■□□□□ 0.76
UBE2D4-201ENST00000222402 PANK3Q9H999 370 aa19.83■□□□□ 0.76
UBE2D4-201ENST00000222402 ATP10BO94823 1461 aa19.82■□□□□ 0.76
UBE2D4-201ENST00000222402 ARHGAP5Q13017 1502 aa19.81■□□□□ 0.76
UBE2D4-201ENST00000222402 RCAN3Q9UKA8 241 aa19.81■□□□□ 0.76
UBE2D4-201ENST00000222402 NBR1Q14596 966 aa19.81■□□□□ 0.76
UBE2D4-201ENST00000222402 KIF14Q15058 1648 aa19.8■□□□□ 0.76
UBE2D4-201ENST00000222402 SENP3Q9H4L4 574 aaPredicted RBP19.8■□□□□ 0.76
UBE2D4-201ENST00000222402 PZPP20742 1482 aa19.8■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms