RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 IGF1RP08069 1367 aa19.44■□□□□ 0.7
PTPRA-201ENST00000216877 RAD54L2Q9Y4B4 1467 aa19.44■□□□□ 0.7
PTPRA-201ENST00000216877 FRAT2O75474 233 aaPredicted RBP19.43■□□□□ 0.7
PTPRA-201ENST00000216877 ZBED9Q6R2W3 1325 aa19.43■□□□□ 0.7
PTPRA-201ENST00000216877 HSPA5P11021 654 aaKnown RBP19.42■□□□□ 0.7
PTPRA-201ENST00000216877 TCERG1O14776 1098 aaKnown RBP19.41■□□□□ 0.7
PTPRA-201ENST00000216877 EXOC6Q8TAG9 804 aa19.41■□□□□ 0.7
PTPRA-201ENST00000216877 DCAF11Q8TEB1 546 aa19.41■□□□□ 0.7
PTPRA-201ENST00000216877 PNNQ9H307 717 aaKnown RBP19.4■□□□□ 0.7
PTPRA-201ENST00000216877 SETD5Q9C0A6 1442 aa19.39■□□□□ 0.69
PTPRA-201ENST00000216877 NUDCQ9Y266 331 aa19.38■□□□□ 0.69
PTPRA-201ENST00000216877 ADAMTS12P58397 1594 aa19.37■□□□□ 0.69
PTPRA-201ENST00000216877 CFAP43Q8NDM7 1665 aa19.37■□□□□ 0.69
PTPRA-201ENST00000216877 PRKRIP1Q9H875 184 aaPredicted RBP19.36■□□□□ 0.69
PTPRA-201ENST00000216877 BACH2Q9BYV9 841 aa19.35■□□□□ 0.69
PTPRA-201ENST00000216877 EIF4G2P78344 907 aaKnown RBP eCLIP19.34■□□□□ 0.69
PTPRA-201ENST00000216877 ARHGAP35Q9NRY4 1499 aa19.33■□□□□ 0.68
PTPRA-201ENST00000216877 RRAGDQ9NQL2 400 aaPredicted RBP19.32■□□□□ 0.68
PTPRA-201ENST00000216877 KIF27Q86VH2 1401 aa19.31■□□□□ 0.68
PTPRA-201ENST00000216877 MRC2Q9UBG0 1479 aa19.31■□□□□ 0.68
PTPRA-201ENST00000216877 EIF4G3O43432 1585 aaKnown RBP19.31■□□□□ 0.68
PTPRA-201ENST00000216877 MAPKBP1O60336 1514 aa19.29■□□□□ 0.68
PTPRA-201ENST00000216877 GZF1Q9H116 711 aaPredicted RBP19.27■□□□□ 0.68
PTPRA-201ENST00000216877 TMC1Q8TDI8 760 aa19.27■□□□□ 0.68
PTPRA-201ENST00000216877 ARID3AQ99856 593 aa19.26■□□□□ 0.67
PTPRA-201ENST00000216877 SLKQ9H2G2 1235 aaPredicted RBP19.25■□□□□ 0.67
PTPRA-201ENST00000216877 POGKQ9P215 609 aa19.25■□□□□ 0.67
PTPRA-201ENST00000216877 PDS5BQ9NTI5 1447 aa19.24■□□□□ 0.67
PTPRA-201ENST00000216877 RGS3P49796 1198 aa19.24■□□□□ 0.67
PTPRA-201ENST00000216877 PLIN1O60240 522 aa19.23■□□□□ 0.67
PTPRA-201ENST00000216877 RRBP1Q9P2E9 1410 aaKnown RBP19.23■□□□□ 0.67
PTPRA-201ENST00000216877 ZNF326Q5BKZ1 582 aaKnown RBP19.22■□□□□ 0.67
PTPRA-201ENST00000216877 RRP9O43818 475 aaKnown RBP19.2■□□□□ 0.66
PTPRA-201ENST00000216877 MAP3K1Q13233 1512 aa19.2■□□□□ 0.66
PTPRA-201ENST00000216877 SNAPC4Q5SXM2 1469 aa19.18■□□□□ 0.66
PTPRA-201ENST00000216877 RRP1P56182 461 aaKnown RBP19.16■□□□□ 0.66
PTPRA-201ENST00000216877 RCAN3Q9UKA8 241 aa19.16■□□□□ 0.66
PTPRA-201ENST00000216877 RBM10P98175 930 aaKnown RBP19.16■□□□□ 0.66
PTPRA-201ENST00000216877 MS4A1P11836 297 aa19.15■□□□□ 0.66
PTPRA-201ENST00000216877 L1TD1Q5T7N2 865 aaKnown RBP19.15■□□□□ 0.66
PTPRA-201ENST00000216877 ZNF608Q9ULD9 1512 aaPredicted RBP19.15■□□□□ 0.66
PTPRA-201ENST00000216877 PCF11O94913 1555 aaKnown RBP19.15■□□□□ 0.66
PTPRA-201ENST00000216877 SPRYD3Q8NCJ5 442 aa19.14■□□□□ 0.66
PTPRA-201ENST00000216877 EFCAB5A4FU69 1503 aa19.12■□□□□ 0.65
PTPRA-201ENST00000216877 SMG6Q86US8 1419 aaKnown RBP19.1■□□□□ 0.65
PTPRA-201ENST00000216877 CHIC2Q9UKJ5 165 aa19.1■□□□□ 0.65
PTPRA-201ENST00000216877 GAPVD1Q14C86 1478 aa19.1■□□□□ 0.65
PTPRA-201ENST00000216877 CEP170Q5SW79 1584 aa19.09■□□□□ 0.65
PTPRA-201ENST00000216877 TIAM1Q13009 1591 aa19.08■□□□□ 0.64
PTPRA-201ENST00000216877 GOLGA6L3A6NEY3 463 aa19.07■□□□□ 0.64
PTPRA-201ENST00000216877 IFT140Q96RY7 1462 aa19.07■□□□□ 0.64
PTPRA-201ENST00000216877 ARHGEF11O15085 1522 aa19.06■□□□□ 0.64
PTPRA-201ENST00000216877 TRIM44Q96DX7 344 aaPredicted RBP19.06■□□□□ 0.64
PTPRA-201ENST00000216877 FOXD1Q16676 465 aa19.06■□□□□ 0.64
PTPRA-201ENST00000216877 PANK2Q9BZ23 570 aa19.06■□□□□ 0.64
PTPRA-201ENST00000216877 CNTLNQ9NXG0 1405 aa19.06■□□□□ 0.64
PTPRA-201ENST00000216877 CRBNQ96SW2 442 aa19.05■□□□□ 0.64
PTPRA-201ENST00000216877 AQRO60306 1485 aaKnown RBP eCLIP19.05■□□□□ 0.647e-8■■■■□ 24.7
PTPRA-201ENST00000216877 RRP7BPQ9NSQ0 103 aa19.05■□□□□ 0.64
PTPRA-201ENST00000216877 SHROOM2Q13796 1616 aa19.04■□□□□ 0.64
PTPRA-201ENST00000216877 UGGT2Q9NYU1 1516 aa19.02■□□□□ 0.64
PTPRA-201ENST00000216877 CARMIL1Q5VZK9 1371 aa19.02■□□□□ 0.64
PTPRA-201ENST00000216877 PHLDB1Q86UU1 1377 aa19■□□□□ 0.63
PTPRA-201ENST00000216877 L3MBTL2Q969R5 705 aa18.99■□□□□ 0.63
PTPRA-201ENST00000216877 MAGI3Q5TCQ9 1506 aa18.99■□□□□ 0.63
PTPRA-201ENST00000216877 CCDC7Q96M83 1385 aa18.99■□□□□ 0.63
PTPRA-201ENST00000216877 GRIN2BQ13224 1484 aa18.99■□□□□ 0.63
PTPRA-201ENST00000216877 FAM161AQ3B820 660 aa18.99■□□□□ 0.63
PTPRA-201ENST00000216877 CDCA7LQ96GN5 454 aa18.98■□□□□ 0.63
PTPRA-201ENST00000216877 XRCC6P12956 609 aaKnown RBP eCLIP18.97■□□□□ 0.63
PTPRA-201ENST00000216877 MYH16Q9H6N6 1097 aa18.97■□□□□ 0.63
PTPRA-201ENST00000216877 DISP1Q96F81 1524 aa18.96■□□□□ 0.63
PTPRA-201ENST00000216877 ZNF777Q9ULD5 760 aaPredicted RBP18.96■□□□□ 0.63
PTPRA-201ENST00000216877 BECN1Q14457 450 aa18.96■□□□□ 0.63
PTPRA-201ENST00000216877 KIF7Q2M1P5 1343 aa18.96■□□□□ 0.63
PTPRA-201ENST00000216877 FAM13BQ9NYF5 915 aa18.95■□□□□ 0.62
PTPRA-201ENST00000216877 CHD1O14646 1710 aa18.95■□□□□ 0.62
PTPRA-201ENST00000216877 RNF123Q5XPI4 1314 aa18.95■□□□□ 0.62
PTPRA-201ENST00000216877 CLCN1P35523 988 aa18.95■□□□□ 0.62
PTPRA-201ENST00000216877 PDE4CQ08493 712 aa18.94■□□□□ 0.62
PTPRA-201ENST00000216877 FHAD1B1AJZ9 1412 aa18.94■□□□□ 0.62
PTPRA-201ENST00000216877 IQGAP2Q13576 1575 aa18.94■□□□□ 0.62
PTPRA-201ENST00000216877 AMER1Q5JTC6 1135 aaPredicted RBP18.94■□□□□ 0.62
PTPRA-201ENST00000216877 KIAA0556O60303 1618 aa18.94■□□□□ 0.62
PTPRA-201ENST00000216877 AAMPQ13685 434 aa18.91■□□□□ 0.62
PTPRA-201ENST00000216877 TDRD9Q8NDG6 1382 aaKnown RBP18.9■□□□□ 0.62
PTPRA-201ENST00000216877 ESPNB1AK53 854 aa18.9■□□□□ 0.62
PTPRA-201ENST00000216877 FYCO1Q9BQS8 1478 aa18.89■□□□□ 0.62
PTPRA-201ENST00000216877 PNISRQ8TF01 805 aaKnown RBP18.89■□□□□ 0.61
PTPRA-201ENST00000216877 ZHX1Q9UKY1 873 aaPredicted RBP18.89■□□□□ 0.61
PTPRA-201ENST00000216877 C20orf194Q5TEA3 1177 aa18.88■□□□□ 0.61
PTPRA-201ENST00000216877 PRDM10Q9NQV6 1147 aa18.87■□□□□ 0.61
PTPRA-201ENST00000216877 NUP160Q12769 1436 aa18.87■□□□□ 0.61
PTPRA-201ENST00000216877 CHMP7Q8WUX9 453 aaPredicted RBP18.87■□□□□ 0.61
PTPRA-201ENST00000216877 ZBTB7CA1YPR0 619 aa18.86■□□□□ 0.61
PTPRA-201ENST00000216877 PDCL3Q9H2J4 239 aa18.86■□□□□ 0.61
PTPRA-201ENST00000216877 MAGI1Q96QZ7 1491 aaPredicted RBP18.86■□□□□ 0.61
PTPRA-201ENST00000216877 KIAA1211Q6ZU35 1233 aa18.86■□□□□ 0.61
PTPRA-201ENST00000216877 GRIN2AQ12879 1464 aa18.85■□□□□ 0.61
PTPRA-201ENST00000216877 ADCY10Q96PN6 1610 aa18.85■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms