RNA–Protein interactions for RNA: ENSMUST00000108530.1

Nup88-202, Transcript of Nuclear pore complex protein Nup88, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Nup88, Length 2,389 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Nup88-202ENSMUST00000108530 UacaQ8CGB3 1411 aa21.58■■□□□ 1.04
Nup88-202ENSMUST00000108530 Abcc1O35379 1528 aa21.58■■□□□ 1.04
Nup88-202ENSMUST00000108530 Rrbp1Q99PL5 1605 aaKnown RBP21.57■■□□□ 1.04
Nup88-202ENSMUST00000108530 Mapkbp1Q6NS57 1503 aa21.56■■□□□ 1.04
Nup88-202ENSMUST00000108530 Plekhh2Q8C115 1491 aa21.56■■□□□ 1.04
Nup88-202ENSMUST00000108530 Ppargc1bQ8VHJ7 1014 aa21.53■■□□□ 1.04
Nup88-202ENSMUST00000108530 Mtus2Q3UHD3 1353 aa21.52■■□□□ 1.04
Nup88-202ENSMUST00000108530 Ccer2J3QPU5 274 aa21.52■■□□□ 1.04
Nup88-202ENSMUST00000108530 Tdrd9Q14BI7 1383 aa21.52■■□□□ 1.04
Nup88-202ENSMUST00000108530 Pelp1Q9DBD5 1123 aaKnown RBP21.52■■□□□ 1.04
Nup88-202ENSMUST00000108530 Chd1P40201 1711 aa21.51■■□□□ 1.03
Nup88-202ENSMUST00000108530 Fancd2Q80V62 1450 aa21.5■■□□□ 1.03
Nup88-202ENSMUST00000108530 Hspa5P20029 655 aaKnown RBP21.49■■□□□ 1.03
Nup88-202ENSMUST00000108530 Ifnlr1Q8CGK5 535 aa21.48■■□□□ 1.03
Nup88-202ENSMUST00000108530 Zfp644E9QA22 1323 aa21.48■■□□□ 1.03
Nup88-202ENSMUST00000108530 NclP09405 707 aaKnown RBP21.45■■□□□ 1.02
Nup88-202ENSMUST00000108530 SphkapQ6NSW3 1687 aa21.45■■□□□ 1.02
Nup88-202ENSMUST00000108530 Ankrd36D3Z4K0 1415 aa21.44■■□□□ 1.02
Nup88-202ENSMUST00000108530 Rfx7F8VPJ6 1459 aa21.44■■□□□ 1.02
Nup88-202ENSMUST00000108530 Adgrb2Q8CGM1 1561 aa21.43■■□□□ 1.02
Nup88-202ENSMUST00000108530 Mlh3A0A1Y7VMP7 1443 aa21.42■■□□□ 1.02
Nup88-202ENSMUST00000108530 Cul7Q8VE73 1689 aa21.42■■□□□ 1.02
Nup88-202ENSMUST00000108530 Mphosph9A6H5Y1 991 aa21.4■■□□□ 1.02
Nup88-202ENSMUST00000108530 Fam208aQ69ZR9 1610 aaKnown RBP21.39■■□□□ 1.01
Nup88-202ENSMUST00000108530 Kdm3bQ6ZPY7 1562 aa21.38■■□□□ 1.01
Nup88-202ENSMUST00000108530 Il16O54824 1322 aa21.38■■□□□ 1.01
Nup88-202ENSMUST00000108530 Ythdc2B2RR83 1445 aaKnown RBP21.38■■□□□ 1.01
Nup88-202ENSMUST00000108530 Cdk11bP24788 784 aaKnown RBP21.37■■□□□ 1.01
Nup88-202ENSMUST00000108530 Caskin1Q6P9K8 1431 aa21.36■■□□□ 1.01
Nup88-202ENSMUST00000108530 ClspnQ80YR7 1315 aa21.35■■□□□ 1.01
Nup88-202ENSMUST00000108530 NhsB1AV60 1647 aa21.34■■□□□ 1.01
Nup88-202ENSMUST00000108530 Arhgap5P97393 1501 aa21.33■■□□□ 1.01
Nup88-202ENSMUST00000108530 Znf608Q56A10 1511 aa21.33■■□□□ 1.01
Nup88-202ENSMUST00000108530 Fhod3Q76LL6 1578 aa21.31■■□□□ 1
Nup88-202ENSMUST00000108530 Atp10dQ8K2X1 1416 aa21.31■■□□□ 1
Nup88-202ENSMUST00000108530 PtprtQ99M80 1454 aa21.3■■□□□ 1
Nup88-202ENSMUST00000108530 Trappc8E9PWG2 1437 aa21.3■■□□□ 1
Nup88-202ENSMUST00000108530 Pabpn1Q8CCS6 302 aaKnown RBP21.29■■□□□ 1
Nup88-202ENSMUST00000108530 AlkP97793 1621 aa21.28■■□□□ 1
Nup88-202ENSMUST00000108530 Gapvd1Q6PAR5 1458 aa21.27■■□□□ 1
Nup88-202ENSMUST00000108530 Pkd2O35245 966 aa21.25■□□□□ 0.99
Nup88-202ENSMUST00000108530 Neurod1Q60867 357 aa21.25■□□□□ 0.99
Nup88-202ENSMUST00000108530 Zbtb7cQ8VCZ7 619 aa21.24■□□□□ 0.99
Nup88-202ENSMUST00000108530 Sart1Q9Z315 806 aaKnown RBP21.24■□□□□ 0.99
Nup88-202ENSMUST00000108530 Arid3cA6PWV5 409 aa21.24■□□□□ 0.99
Nup88-202ENSMUST00000108530 Rnf17Q99MV7 1640 aa21.23■□□□□ 0.99
Nup88-202ENSMUST00000108530 Gm32742A0A1B0GT42 1604 aa21.23■□□□□ 0.99
Nup88-202ENSMUST00000108530 Rrp7aQ9D1C9 280 aaKnown RBP21.22■□□□□ 0.99
Nup88-202ENSMUST00000108530 Kiaa1210E9Q0C6 1637 aa21.21■□□□□ 0.99
Nup88-202ENSMUST00000108530 Abca8bQ8K440 1620 aa21.21■□□□□ 0.99
Nup88-202ENSMUST00000108530 Setbp1Q9Z180 1582 aa21.21■□□□□ 0.99
Nup88-202ENSMUST00000108530 Igf1rQ60751 1373 aa21.2■□□□□ 0.98
Nup88-202ENSMUST00000108530 Ttll5Q8CHB8 1328 aa21.2■□□□□ 0.98
Nup88-202ENSMUST00000108530 Wdr7Q920I9 1489 aa21.18■□□□□ 0.98
Nup88-202ENSMUST00000108530 Naip5Q9R016 1403 aa21.18■□□□□ 0.98
Nup88-202ENSMUST00000108530 Lrrc9Q8CDN9 1456 aa21.17■□□□□ 0.98
Nup88-202ENSMUST00000108530 Fmn2Q9JL04 1578 aa21.16■□□□□ 0.98
Nup88-202ENSMUST00000108530 Trak1Q6PD31 939 aa21.16■□□□□ 0.98
Nup88-202ENSMUST00000108530 Nup155Q99P88 1391 aaKnown RBP21.15■□□□□ 0.98
Nup88-202ENSMUST00000108530 Usp47Q8BY87 1376 aa21.15■□□□□ 0.98
Nup88-202ENSMUST00000108530 Supt6hQ62383 1726 aaKnown RBP21.14■□□□□ 0.97
Nup88-202ENSMUST00000108530 Pdcd11Q6NS46 1862 aaKnown RBP21.13■□□□□ 0.97
Nup88-202ENSMUST00000108530 Cep170Q6A065 1588 aa21.13■□□□□ 0.97
Nup88-202ENSMUST00000108530 Dhx9O70133 1380 aaKnown RBP21.13■□□□□ 0.97
Nup88-202ENSMUST00000108530 Map4P27546 1125 aaKnown RBP21.12■□□□□ 0.97
Nup88-202ENSMUST00000108530 Cfap74Q3UY96 1578 aa21.11■□□□□ 0.97
Nup88-202ENSMUST00000108530 Ssh2Q5SW75 1423 aa21.11■□□□□ 0.97
Nup88-202ENSMUST00000108530 AI481877A2ALV5 1481 aa21.11■□□□□ 0.97
Nup88-202ENSMUST00000108530 Mapk8ip2Q9ERE9 830 aa21.1■□□□□ 0.97
Nup88-202ENSMUST00000108530 Lamc1P02468 1607 aaKnown RBP21.1■□□□□ 0.97
Nup88-202ENSMUST00000108530 Abcc3B2RX12 1523 aa21.08■□□□□ 0.97
Nup88-202ENSMUST00000108530 Rprd2Q6NXI6 1469 aaKnown RBP21.08■□□□□ 0.97
Nup88-202ENSMUST00000108530 Trpm2Q91YD4 1506 aa21.08■□□□□ 0.96
Nup88-202ENSMUST00000108530 Adgrl2Q8JZZ7 1487 aa21.08■□□□□ 0.96
Nup88-202ENSMUST00000108530 Map3k5O35099 1380 aa21.07■□□□□ 0.96
Nup88-202ENSMUST00000108530 Cdc42bpbQ7TT50 1713 aa21.07■□□□□ 0.96
Nup88-202ENSMUST00000108530 Kif21bQ9QXL1 1668 aa21.05■□□□□ 0.96
Nup88-202ENSMUST00000108530 Gm156Q58A37 223 aa21.05■□□□□ 0.96
Nup88-202ENSMUST00000108530 Kidins220E9Q9B7 1793 aa21.04■□□□□ 0.96
Nup88-202ENSMUST00000108530 Zfyve16Q80U44 1528 aa21.03■□□□□ 0.96
Nup88-202ENSMUST00000108530 Mast1Q9R1L5 1570 aa21.03■□□□□ 0.96
Nup88-202ENSMUST00000108530 Sin3aQ60520 1274 aaKnown RBP21.02■□□□□ 0.96
Nup88-202ENSMUST00000108530 Pik3c2gO70167 1506 aa21.02■□□□□ 0.96
Nup88-202ENSMUST00000108530 Hnrnpul2Q00PI9 745 aaKnown RBP21.01■□□□□ 0.95
Nup88-202ENSMUST00000108530 Rgl3Q3UYI5 709 aa21.01■□□□□ 0.95
Nup88-202ENSMUST00000108530 Asxl1P59598 1514 aa20.99■□□□□ 0.95
Nup88-202ENSMUST00000108530 Gm13697A2AK42 830 aa20.99■□□□□ 0.95
Nup88-202ENSMUST00000108530 Hecw1Q8K4P8 1604 aa20.98■□□□□ 0.95
Nup88-202ENSMUST00000108530 Spag9Q58A65 1321 aaKnown RBP20.98■□□□□ 0.95
Nup88-202ENSMUST00000108530 Abca9Q8K449 1623 aa20.97■□□□□ 0.95
Nup88-202ENSMUST00000108530 Kif14L0N7N1 1674 aaKnown RBP20.97■□□□□ 0.95
Nup88-202ENSMUST00000108530 Camsap2Q8C1B1 1461 aa20.96■□□□□ 0.95
Nup88-202ENSMUST00000108530 Prdm16A2A935 1275 aa20.95■□□□□ 0.94
Nup88-202ENSMUST00000108530 Clstn2Q9ER65 966 aa20.95■□□□□ 0.94
Nup88-202ENSMUST00000108530 Neurl4Q5NCX5 1563 aa20.94■□□□□ 0.94
Nup88-202ENSMUST00000108530 Lemd3Q9WU40 921 aa20.93■□□□□ 0.94
Nup88-202ENSMUST00000108530 PtprgQ05909 1442 aa20.92■□□□□ 0.94
Nup88-202ENSMUST00000108530 Cd109Q8R422 1442 aa20.9■□□□□ 0.94
Nup88-202ENSMUST00000108530 Ak9G3UYQ4 1894 aa20.9■□□□□ 0.94
Nup88-202ENSMUST00000108530 Pde4cQ3UEI1 686 aa20.89■□□□□ 0.93
Retrieved 100 of 22,080 RNA–protein pairs in 12.3 ms