RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 DIEXFQ68CQ4 756 aaKnown RBP17.76■□□□□ 0.43
SYNE2-228ENST00000639659 NECAB3Q96P71 396 aaPredicted RBP17.76■□□□□ 0.43
SYNE2-228ENST00000639659 ALDH8A1Q9H2A2 487 aaPredicted RBP17.76■□□□□ 0.43
SYNE2-228ENST00000639659 VTA1Q9NP79 307 aa17.76■□□□□ 0.43
SYNE2-228ENST00000639659 TCF20Q9UGU0 1960 aaKnown RBP17.76■□□□□ 0.43
SYNE2-228ENST00000639659 CHD7Q9P2D1 2997 aa17.76■□□□□ 0.43
SYNE2-228ENST00000639659 FRMPD2Q68DX3 1309 aaPredicted RBP17.75■□□□□ 0.43
SYNE2-228ENST00000639659 ERC2O15083 957 aa17.75■□□□□ 0.43
SYNE2-228ENST00000639659 BAATQ14032 418 aaPredicted RBP17.75■□□□□ 0.43
SYNE2-228ENST00000639659 TTLL4Q14679 1199 aa17.75■□□□□ 0.43
SYNE2-228ENST00000639659 RRP12Q5JTH9 1297 aaKnown RBP17.75■□□□□ 0.43
SYNE2-228ENST00000639659 PPP4R3BQ5MIZ7 849 aa17.75■□□□□ 0.43
SYNE2-228ENST00000639659 OR6J1Q8NGC5 347 aa17.75■□□□□ 0.43
SYNE2-228ENST00000639659 OTUD7AQ8TE49 926 aaPredicted RBP17.75■□□□□ 0.43
SYNE2-228ENST00000639659 DCTPP1Q9H773 170 aa17.75■□□□□ 0.43
SYNE2-228ENST00000639659 GPHNQ9NQX3 736 aaPredicted RBP17.75■□□□□ 0.43
SYNE2-228ENST00000639659 TNKSO95271 1327 aa17.74■□□□□ 0.43
SYNE2-228ENST00000639659 SCN5AQ14524 2016 aa17.74■□□□□ 0.43
SYNE2-228ENST00000639659 RFXAPO00287 272 aa17.74■□□□□ 0.43
SYNE2-228ENST00000639659 CALML3P27482 149 aa17.74■□□□□ 0.43
SYNE2-228ENST00000639659 ALDH5A1P51649 535 aaPredicted RBP17.74■□□□□ 0.43
SYNE2-228ENST00000639659 TFF2Q03403 129 aa17.74■□□□□ 0.43
SYNE2-228ENST00000639659 ZMYM1Q5SVZ6 1142 aa17.74■□□□□ 0.43
SYNE2-228ENST00000639659 TTBK2Q6IQ55 1244 aa17.74■□□□□ 0.43
SYNE2-228ENST00000639659 WDR11Q9BZH6 1224 aa17.74■□□□□ 0.43
SYNE2-228ENST00000639659 GPCPD1Q9NPB8 672 aa17.74■□□□□ 0.43
SYNE2-228ENST00000639659 IL17RBQ9NRM6 502 aa17.74■□□□□ 0.43
SYNE2-228ENST00000639659 POLR3EQ9NVU0 708 aa17.74■□□□□ 0.43
SYNE2-228ENST00000639659 ADD3Q9UEY8 706 aaKnown RBP17.74■□□□□ 0.43
SYNE2-228ENST00000639659 PCDHA11Q9Y5I1 949 aa17.74■□□□□ 0.43
SYNE2-228ENST00000639659 NFIBO00712 420 aa17.73■□□□□ 0.43
SYNE2-228ENST00000639659 ICAM1P05362 532 aa17.73■□□□□ 0.43
SYNE2-228ENST00000639659 CA3P07451 260 aa17.73■□□□□ 0.43
SYNE2-228ENST00000639659 DUSP28Q4G0W2 176 aa17.73■□□□□ 0.43
SYNE2-228ENST00000639659 TMEM67Q5HYA8 995 aa17.73■□□□□ 0.43
SYNE2-228ENST00000639659 SLC30A10Q6XR72 485 aa17.73■□□□□ 0.43
SYNE2-228ENST00000639659 SEZ6LQ9BYH1 1024 aa17.73■□□□□ 0.43
SYNE2-228ENST00000639659 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.73■□□□□ 0.43
SYNE2-228ENST00000639659 Q9Y3F1 56 aa17.73■□□□□ 0.43
SYNE2-228ENST00000639659 TTC41PQ6P2S7 1318 aa17.72■□□□□ 0.43
SYNE2-228ENST00000639659 MUC3AQ02505 3323 aa17.72■□□□□ 0.43
SYNE2-228ENST00000639659 GTPBP6O43824 516 aaPredicted RBP17.72■□□□□ 0.43
SYNE2-228ENST00000639659 PLA2G6O60733 806 aa17.72■□□□□ 0.43
SYNE2-228ENST00000639659 SUPT20HL2P0C7V6 817 aa17.72■□□□□ 0.43
SYNE2-228ENST00000639659 ACTN1P12814 892 aa17.72■□□□□ 0.43
SYNE2-228ENST00000639659 CPT1AP50416 773 aa17.72■□□□□ 0.43
SYNE2-228ENST00000639659 SYDE2Q5VT97 1194 aa17.72■□□□□ 0.43
SYNE2-228ENST00000639659 PI4K2BQ8TCG2 481 aa17.72■□□□□ 0.43
SYNE2-228ENST00000639659 DCAF4Q8WV16 495 aa17.72■□□□□ 0.43
SYNE2-228ENST00000639659 FTOQ9C0B1 505 aaKnown RBP eCLIP17.72■□□□□ 0.43
SYNE2-228ENST00000639659 KCNQ1P51787 676 aa17.71■□□□□ 0.43
SYNE2-228ENST00000639659 PURAQ00577 322 aaKnown RBP17.71■□□□□ 0.43
SYNE2-228ENST00000639659 PDE4DQ08499 809 aa17.71■□□□□ 0.43
SYNE2-228ENST00000639659 PPP2R5BQ15173 497 aa17.71■□□□□ 0.43
SYNE2-228ENST00000639659 BRDTQ58F21 947 aaPredicted RBP17.71■□□□□ 0.43
SYNE2-228ENST00000639659 MTG1Q9BT17 334 aaPredicted RBP17.71■□□□□ 0.43
SYNE2-228ENST00000639659 RANBP17Q9H2T7 1088 aaKnown RBP17.71■□□□□ 0.43
SYNE2-228ENST00000639659 NOD1Q9Y239 953 aa17.71■□□□□ 0.43
SYNE2-228ENST00000639659 REV3LO60673 3130 aa17.71■□□□□ 0.43
SYNE2-228ENST00000639659 RAD50Q92878 1312 aa17.71■□□□□ 0.42
SYNE2-228ENST00000639659 PFKMP08237 780 aa17.7■□□□□ 0.42
SYNE2-228ENST00000639659 MX1P20591 662 aa17.7■□□□□ 0.42
SYNE2-228ENST00000639659 NBPF20Q3BBV1 942 aa17.7■□□□□ 0.42
SYNE2-228ENST00000639659 VPS53Q5VIR6 699 aa17.7■□□□□ 0.42
SYNE2-228ENST00000639659 KRT40Q6A162 431 aa17.7■□□□□ 0.42
SYNE2-228ENST00000639659 RETREG2Q8NC44 543 aa17.7■□□□□ 0.42
SYNE2-228ENST00000639659 ARNTL2Q8WYA1 636 aa17.7■□□□□ 0.42
SYNE2-228ENST00000639659 COPS5Q92905 334 aa17.7■□□□□ 0.42
SYNE2-228ENST00000639659 FOXP2O15409 715 aa17.69■□□□□ 0.42
SYNE2-228ENST00000639659 AAK1Q2M2I8 961 aa17.69■□□□□ 0.42
SYNE2-228ENST00000639659 RNF207Q6ZRF8 634 aa17.69■□□□□ 0.42
SYNE2-228ENST00000639659 MORC4Q8TE76 937 aa17.69■□□□□ 0.42
SYNE2-228ENST00000639659 VWCEQ96DN2 955 aa17.69■□□□□ 0.42
SYNE2-228ENST00000639659 ZBTB47Q9UFB7 747 aaPredicted RBP17.69■□□□□ 0.42
SYNE2-228ENST00000639659 EPOPA6NHQ4 379 aa17.68■□□□□ 0.42
SYNE2-228ENST00000639659 SLC9A7Q96T83 725 aa17.68■□□□□ 0.42
SYNE2-228ENST00000639659 MPHOSPH6Q99547 160 aaKnown RBP17.68■□□□□ 0.42
SYNE2-228ENST00000639659 TANC1Q9C0D5 1861 aa17.68■□□□□ 0.42
SYNE2-228ENST00000639659 TOP1P11387 765 aaKnown RBP17.67■□□□□ 0.42
SYNE2-228ENST00000639659 USH1GQ495M9 461 aa17.67■□□□□ 0.42
SYNE2-228ENST00000639659 TMEM47Q9BQJ4 181 aa17.67■□□□□ 0.42
SYNE2-228ENST00000639659 MTCH2Q9Y6C9 303 aa17.67■□□□□ 0.42
SYNE2-228ENST00000639659 PRRC2BQ5JSZ5 2229 aaKnown RBP17.67■□□□□ 0.42
SYNE2-228ENST00000639659 KIF28PB7ZC32 967 aa17.66■□□□□ 0.42
SYNE2-228ENST00000639659 ARHGEF15O94989 841 aa17.66■□□□□ 0.42
SYNE2-228ENST00000639659 TXNP10599 105 aaKnown RBP17.66■□□□□ 0.42
SYNE2-228ENST00000639659 BMP1P13497 986 aa17.66■□□□□ 0.42
SYNE2-228ENST00000639659 HAND2P61296 217 aa17.66■□□□□ 0.42
SYNE2-228ENST00000639659 RPS6P62753 249 aaKnown RBP17.66■□□□□ 0.42
SYNE2-228ENST00000639659 SCFD2Q8WU76 684 aa17.66■□□□□ 0.42
SYNE2-228ENST00000639659 FAM122AQ96E09 287 aa17.66■□□□□ 0.42
SYNE2-228ENST00000639659 SCN10AQ9Y5Y9 1956 aa17.66■□□□□ 0.42
SYNE2-228ENST00000639659 ORC4O43929 436 aa17.65■□□□□ 0.42
SYNE2-228ENST00000639659 IQCF3P0C7M6 154 aa17.65■□□□□ 0.42
SYNE2-228ENST00000639659 RFC2P35250 354 aa17.65■□□□□ 0.42
SYNE2-228ENST00000639659 KCNJ6P48051 423 aa17.65■□□□□ 0.42
SYNE2-228ENST00000639659 TAP1Q03518 808 aa17.65■□□□□ 0.42
SYNE2-228ENST00000639659 BFSP2Q13515 415 aa17.65■□□□□ 0.42
SYNE2-228ENST00000639659 BTNL9Q6UXG8 535 aa17.65■□□□□ 0.42
SYNE2-228ENST00000639659 CHST3Q7LGC8 479 aa17.65■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms