RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 SNAP25P60880 206 aa21.16■□□□□ 0.98
CLN3-259ENST00000637551 RTN1Q16799 776 aa21.16■□□□□ 0.98
CLN3-259ENST00000637551 SLC35G1Q2M3R5 365 aa21.16■□□□□ 0.98
CLN3-259ENST00000637551 NSMFQ6X4W1 530 aa21.16■□□□□ 0.98
CLN3-259ENST00000637551 Q6ZUG5 572 aa21.16■□□□□ 0.98
CLN3-259ENST00000637551 DDX20Q9UHI6 824 aaKnown RBP21.16■□□□□ 0.98
CLN3-259ENST00000637551 PCDHA1Q9Y5I3 950 aa21.16■□□□□ 0.98
CLN3-259ENST00000637551 SLC4A3P48751 1232 aa21.15■□□□□ 0.98
CLN3-259ENST00000637551 HSD17B4P51659 736 aa21.15■□□□□ 0.98
CLN3-259ENST00000637551 RPS6P62753 249 aaKnown RBP21.15■□□□□ 0.98
CLN3-259ENST00000637551 TRIM32Q13049 653 aa21.15■□□□□ 0.98
CLN3-259ENST00000637551 ANKRD1Q15327 319 aa21.15■□□□□ 0.98
CLN3-259ENST00000637551 UBE2Q1Q7Z7E8 422 aa21.15■□□□□ 0.98
CLN3-259ENST00000637551 BRF1Q92994 677 aa21.15■□□□□ 0.98
CLN3-259ENST00000637551 SHISA4Q96DD7 197 aa21.15■□□□□ 0.98
CLN3-259ENST00000637551 ZNF274Q96GC6 653 aaPredicted RBP21.15■□□□□ 0.98
CLN3-259ENST00000637551 DEFB118Q96PH6 123 aa21.15■□□□□ 0.98
CLN3-259ENST00000637551 PIGSQ96S52 555 aa21.15■□□□□ 0.98
CLN3-259ENST00000637551 MYL10Q9BUA6 226 aa21.15■□□□□ 0.98
CLN3-259ENST00000637551 BRPF3Q9ULD4 1205 aa21.15■□□□□ 0.98
CLN3-259ENST00000637551 AKR1A1P14550 325 aa21.14■□□□□ 0.97
CLN3-259ENST00000637551 EDNRBP24530 442 aa21.14■□□□□ 0.97
CLN3-259ENST00000637551 METAP2P50579 478 aaKnown RBP eCLIP21.14■□□□□ 0.97
CLN3-259ENST00000637551 BAATQ14032 418 aaPredicted RBP21.14■□□□□ 0.97
CLN3-259ENST00000637551 USH1GQ495M9 461 aa21.14■□□□□ 0.97
CLN3-259ENST00000637551 ARMCX2Q7L311 632 aa21.14■□□□□ 0.97
CLN3-259ENST00000637551 SRBD1Q8N5C6 995 aaKnown RBP21.14■□□□□ 0.97
CLN3-259ENST00000637551 PRO3102Q9H379 93 aa21.14■□□□□ 0.97
CLN3-259ENST00000637551 VAT1LQ9HCJ6 419 aa21.14■□□□□ 0.97
CLN3-259ENST00000637551 PTPDC1A2A3K4 754 aa21.13■□□□□ 0.97
CLN3-259ENST00000637551 GOLGA8AA7E2F4 631 aa21.13■□□□□ 0.97
CLN3-259ENST00000637551 GOLGA8BA8MQT2 603 aa21.13■□□□□ 0.97
CLN3-259ENST00000637551 PPP1R11O60927 126 aaPredicted RBP21.13■□□□□ 0.97
CLN3-259ENST00000637551 SNAI1O95863 264 aaPredicted RBP21.13■□□□□ 0.97
CLN3-259ENST00000637551 MYCP01106 439 aaPredicted RBP21.13■□□□□ 0.97
CLN3-259ENST00000637551 ZNF865P0CJ78 1059 aaPredicted RBP21.13■□□□□ 0.97
CLN3-259ENST00000637551 LHX8Q68G74 356 aa21.13■□□□□ 0.97
CLN3-259ENST00000637551 PPP1R18Q6NYC8 613 aa21.13■□□□□ 0.97
CLN3-259ENST00000637551 FAM177A1Q8N128 213 aaPredicted RBP21.13■□□□□ 0.97
CLN3-259ENST00000637551 TCEANC2Q96MN5 208 aa21.13■□□□□ 0.97
CLN3-259ENST00000637551 IWS1Q96ST2 819 aa21.13■□□□□ 0.97
CLN3-259ENST00000637551 VTA1Q9NP79 307 aa21.13■□□□□ 0.97
CLN3-259ENST00000637551 CDKN2AIPQ9NXV6 580 aaPredicted RBP21.13■□□□□ 0.97
CLN3-259ENST00000637551 CNTNAP5Q8WYK1 1306 aa21.12■□□□□ 0.97
CLN3-259ENST00000637551 SOWAHBA6NEL2 793 aa21.12■□□□□ 0.97
CLN3-259ENST00000637551 PIK3CDO00329 1044 aa21.12■□□□□ 0.97
CLN3-259ENST00000637551 PLEKHA8P1O95397 391 aa21.12■□□□□ 0.97
CLN3-259ENST00000637551 CCND3P30281 292 aaPredicted RBP21.12■□□□□ 0.97
CLN3-259ENST00000637551 ALDH5A1P51649 535 aaPredicted RBP21.12■□□□□ 0.97
CLN3-259ENST00000637551 CNTN2Q02246 1040 aa21.12■□□□□ 0.97
CLN3-259ENST00000637551 FUT2Q10981 343 aa21.12■□□□□ 0.97
CLN3-259ENST00000637551 HOMER1Q86YM7 354 aa21.12■□□□□ 0.97
CLN3-259ENST00000637551 CCDC144CPQ8IYA2 1237 aa21.12■□□□□ 0.97
CLN3-259ENST00000637551 TRPV1Q8NER1 839 aa21.12■□□□□ 0.97
CLN3-259ENST00000637551 GLT8D2Q9H1C3 349 aa21.12■□□□□ 0.97
CLN3-259ENST00000637551 ASTN1O14525 1302 aa21.11■□□□□ 0.97
CLN3-259ENST00000637551 OPLAHO14841 1288 aa21.11■□□□□ 0.97
CLN3-259ENST00000637551 NKX3-2P78367 333 aa21.11■□□□□ 0.97
CLN3-259ENST00000637551 ACVR2BQ13705 512 aa21.11■□□□□ 0.97
CLN3-259ENST00000637551 TOB2Q14106 344 aaPredicted RBP21.11■□□□□ 0.97
CLN3-259ENST00000637551 SLC30A10Q6XR72 485 aa21.11■□□□□ 0.97
CLN3-259ENST00000637551 NSUN6Q8TEA1 469 aaKnown RBP21.11■□□□□ 0.97
CLN3-259ENST00000637551 DPF3Q92784 378 aa21.11■□□□□ 0.97
CLN3-259ENST00000637551 KATNBL1Q9H079 304 aa21.11■□□□□ 0.97
CLN3-259ENST00000637551 FAM184BQ9ULE4 1060 aa21.11■□□□□ 0.97
CLN3-259ENST00000637551 TFRCP02786 760 aaKnown RBP21.1■□□□□ 0.97
CLN3-259ENST00000637551 APOBRQ0VD83 1088 aa21.1■□□□□ 0.97
CLN3-259ENST00000637551 ARRDC4Q8NCT1 418 aa21.1■□□□□ 0.97
CLN3-259ENST00000637551 SYTL5Q8TDW5 730 aaPredicted RBP21.1■□□□□ 0.97
CLN3-259ENST00000637551 FAM217BQ9NTX9 383 aaPredicted RBP21.1■□□□□ 0.97
CLN3-259ENST00000637551 PDRG1Q9NUG6 133 aa21.1■□□□□ 0.97
CLN3-259ENST00000637551 Q9Y3F1 56 aa21.1■□□□□ 0.97
CLN3-259ENST00000637551 FRMPD4Q14CM0 1322 aa21.09■□□□□ 0.97
CLN3-259ENST00000637551 DUSP11O75319 330 aaKnown RBP21.09■□□□□ 0.97
CLN3-259ENST00000637551 FARP2O94887 1054 aaPredicted RBP21.09■□□□□ 0.97
CLN3-259ENST00000637551 RARBP10826 455 aa21.09■□□□□ 0.97
CLN3-259ENST00000637551 CPA1P15085 419 aa21.09■□□□□ 0.97
CLN3-259ENST00000637551 RXRAP19793 462 aa21.09■□□□□ 0.97
CLN3-259ENST00000637551 PDIA3P30101 505 aaKnown RBP21.09■□□□□ 0.97
CLN3-259ENST00000637551 RBM25P49756 843 aaKnown RBP21.09■□□□□ 0.97
CLN3-259ENST00000637551 RNF26Q9BY78 433 aaPredicted RBP21.09■□□□□ 0.97
CLN3-259ENST00000637551 UPF3BQ9BZI7 483 aaKnown RBP21.09■□□□□ 0.97
CLN3-259ENST00000637551 UPF2Q9HAU5 1272 aaKnown RBP21.09■□□□□ 0.97
CLN3-259ENST00000637551 KIAA1217Q5T5P2 1943 aa21.09■□□□□ 0.97
CLN3-259ENST00000637551 LAMA3Q16787 3333 aa21.09■□□□□ 0.97
CLN3-259ENST00000637551 GCOM1H8Y6P7 765 aaPredicted RBP21.08■□□□□ 0.97
CLN3-259ENST00000637551 DNM1LO00429 736 aa21.08■□□□□ 0.97
CLN3-259ENST00000637551 POLR2MP0CAP2 368 aa21.08■□□□□ 0.97
CLN3-259ENST00000637551 IFNAR1P17181 557 aa21.08■□□□□ 0.97
CLN3-259ENST00000637551 CALML3P27482 149 aa21.08■□□□□ 0.97
CLN3-259ENST00000637551 CNGA1P29973 690 aa21.08■□□□□ 0.97
CLN3-259ENST00000637551 RBM47A0AV96 593 aaKnown RBP21.07■□□□□ 0.96
CLN3-259ENST00000637551 STAM2O75886 525 aa21.07■□□□□ 0.96
CLN3-259ENST00000637551 CST5P28325 142 aaPredicted RBP21.07■□□□□ 0.96
CLN3-259ENST00000637551 CDC27P30260 824 aa21.07■□□□□ 0.96
CLN3-259ENST00000637551 IQSEC1Q6DN90 963 aa21.07■□□□□ 0.96
CLN3-259ENST00000637551 XRRA1Q6P2D8 792 aa21.07■□□□□ 0.96
CLN3-259ENST00000637551 CPLX2Q6PUV4 134 aaKnown RBP21.07■□□□□ 0.96
CLN3-259ENST00000637551 NECAB2Q7Z6G3 386 aa21.07■□□□□ 0.96
CLN3-259ENST00000637551 CCDC12Q8WUD4 166 aaPredicted RBP21.07■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms