RNA–Protein interactions for RNA: ENST00000636172.1

CLN3-245, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,536 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-245ENST00000636172 GHRHRQ02643 423 aa23.56■■□□□ 1.36
CLN3-245ENST00000636172 JAKMIP3Q5VZ66 844 aa23.56■■□□□ 1.36
CLN3-245ENST00000636172 MCF2L2Q86YR7 1114 aa23.56■■□□□ 1.36
CLN3-245ENST00000636172 CHST13Q8NET6 341 aa23.56■■□□□ 1.36
CLN3-245ENST00000636172 ACAD9Q9H845 621 aa23.56■■□□□ 1.36
CLN3-245ENST00000636172 GCOM1H8Y6P7 765 aaPredicted RBP23.55■■□□□ 1.36
CLN3-245ENST00000636172 SLC25A27O95847 323 aa23.55■■□□□ 1.36
CLN3-245ENST00000636172 POLR2MP0CAP2 368 aa23.55■■□□□ 1.36
CLN3-245ENST00000636172 FOXD4L6Q3SYB3 417 aaPredicted RBP23.55■■□□□ 1.36
CLN3-245ENST00000636172 FOXD4L3Q6VB84 417 aaPredicted RBP23.55■■□□□ 1.36
CLN3-245ENST00000636172 PIK3AP1Q6ZUJ8 805 aa23.55■■□□□ 1.36
CLN3-245ENST00000636172 CHAMP1Q96JM3 812 aa23.55■■□□□ 1.36
CLN3-245ENST00000636172 R3HDMLQ9H3Y0 253 aa23.55■■□□□ 1.36
CLN3-245ENST00000636172 ERCC3P19447 782 aa23.54■■□□□ 1.36
CLN3-245ENST00000636172 MAP2K2P36507 400 aa23.54■■□□□ 1.36
CLN3-245ENST00000636172 CRHR2Q13324 411 aa23.54■■□□□ 1.36
CLN3-245ENST00000636172 FAM110CQ1W6H9 321 aa23.54■■□□□ 1.36
CLN3-245ENST00000636172 KRT25Q7Z3Z0 450 aa23.54■■□□□ 1.36
CLN3-245ENST00000636172 NCAPG2Q86XI2 1143 aa23.54■■□□□ 1.36
CLN3-245ENST00000636172 ZFYVE28Q9HCC9 887 aa23.54■■□□□ 1.36
CLN3-245ENST00000636172 CPA4Q9UI42 421 aa23.54■■□□□ 1.36
CLN3-245ENST00000636172 ATP6V1DQ9Y5K8 247 aa23.54■■□□□ 1.36
CLN3-245ENST00000636172 CA12O43570 354 aa23.54■■□□□ 1.36
CLN3-245ENST00000636172 TLR2O60603 784 aa23.54■■□□□ 1.36
CLN3-245ENST00000636172 ALDH1A1P00352 501 aa23.54■■□□□ 1.36
CLN3-245ENST00000636172 BCRP11274 1271 aa23.54■■□□□ 1.36
CLN3-245ENST00000636172 COPB2P35606 906 aa23.54■■□□□ 1.36
CLN3-245ENST00000636172 MYSM1Q5VVJ2 828 aa23.54■■□□□ 1.36
CLN3-245ENST00000636172 SHCBP1Q8NEM2 672 aa23.54■■□□□ 1.36
CLN3-245ENST00000636172 PGBD1Q96JS3 809 aa23.54■■□□□ 1.36
CLN3-245ENST00000636172 PORCNQ9H237 461 aa23.54■■□□□ 1.36
CLN3-245ENST00000636172 FBXO40Q9UH90 709 aa23.54■■□□□ 1.36
CLN3-245ENST00000636172 CCDC194A0A1B0GVG4 234 aa23.53■■□□□ 1.36
CLN3-245ENST00000636172 AP3B2Q13367 1082 aa23.53■■□□□ 1.36
CLN3-245ENST00000636172 NSMFQ6X4W1 530 aa23.53■■□□□ 1.36
CLN3-245ENST00000636172 SLC30A10Q6XR72 485 aa23.53■■□□□ 1.36
CLN3-245ENST00000636172 SAMD3Q8N6K7 520 aa23.53■■□□□ 1.36
CLN3-245ENST00000636172 A1CFQ9NQ94 594 aaKnown RBP23.53■■□□□ 1.36
CLN3-245ENST00000636172 RPS6P62753 249 aaKnown RBP23.52■■□□□ 1.36
CLN3-245ENST00000636172 CCNA1P78396 465 aa23.52■■□□□ 1.36
CLN3-245ENST00000636172 NONOQ15233 471 aaKnown RBP eCLIP23.52■■□□□ 1.36
CLN3-245ENST00000636172 C17orf99Q6UX52 265 aa23.52■■□□□ 1.36
CLN3-245ENST00000636172 RNF207Q6ZRF8 634 aa23.52■■□□□ 1.36
CLN3-245ENST00000636172 MROH8Q9H579 483 aa23.52■■□□□ 1.36
CLN3-245ENST00000636172 MAP3K20Q9NYL2 800 aaKnown RBP23.52■■□□□ 1.36
CLN3-245ENST00000636172 COL20A1Q9P218 1284 aa23.52■■□□□ 1.36
CLN3-245ENST00000636172 FOSP01100 380 aaPredicted RBP23.51■■□□□ 1.35
CLN3-245ENST00000636172 TOB1P50616 345 aaPredicted RBP23.51■■□□□ 1.35
CLN3-245ENST00000636172 DNM1Q05193 864 aaKnown RBP23.51■■□□□ 1.35
CLN3-245ENST00000636172 BAATQ14032 418 aaPredicted RBP23.51■■□□□ 1.35
CLN3-245ENST00000636172 MCTP2Q6DN12 878 aa23.51■■□□□ 1.35
CLN3-245ENST00000636172 DHX30Q7L2E3 1194 aaKnown RBP eCLIP23.51■■□□□ 1.35
CLN3-245ENST00000636172 FCHSD1Q86WN1 690 aa23.51■■□□□ 1.35
CLN3-245ENST00000636172 SYTL5Q8TDW5 730 aaPredicted RBP23.51■■□□□ 1.35
CLN3-245ENST00000636172 ANO3Q9BYT9 981 aa23.51■■□□□ 1.35
CLN3-245ENST00000636172 MAF1Q9H063 256 aa23.51■■□□□ 1.35
CLN3-245ENST00000636172 EFCC1Q9HA90 598 aa23.51■■□□□ 1.35
CLN3-245ENST00000636172 CYP39A1Q9NYL5 469 aa23.51■■□□□ 1.35
CLN3-245ENST00000636172 MYH7BA7E2Y1 1941 aa23.51■■□□□ 1.35
CLN3-245ENST00000636172 LCTP09848 1927 aa23.51■■□□□ 1.35
CLN3-245ENST00000636172 TCHHQ07283 1943 aa23.51■■□□□ 1.35
CLN3-245ENST00000636172 SPDYE3A6NKU9 549 aa23.5■■□□□ 1.35
CLN3-245ENST00000636172 INF2Q27J81 1249 aa23.5■■□□□ 1.35
CLN3-245ENST00000636172 RILPL1Q5EBL4 403 aa23.49■■□□□ 1.35
CLN3-245ENST00000636172 TBCKQ8TEA7 893 aa23.49■■□□□ 1.35
CLN3-245ENST00000636172 PLXNB2O15031 1838 aa23.49■■□□□ 1.35
CLN3-245ENST00000636172 ANKRD35Q8N283 1001 aa23.49■■□□□ 1.35
CLN3-245ENST00000636172 FTOQ9C0B1 505 aaKnown RBP eCLIP23.49■■□□□ 1.35
CLN3-245ENST00000636172 NOL7Q9UMY1 257 aaKnown RBP23.49■■□□□ 1.35
CLN3-245ENST00000636172 PFASO15067 1338 aa23.48■■□□□ 1.35
CLN3-245ENST00000636172 WNT7AO00755 349 aa23.48■■□□□ 1.35
CLN3-245ENST00000636172 BAG4O95429 457 aaKnown RBP23.48■■□□□ 1.35
CLN3-245ENST00000636172 TRAPPC10P48553 1259 aa23.48■■□□□ 1.35
CLN3-245ENST00000636172 NBR1Q14596 966 aa23.48■■□□□ 1.35
CLN3-245ENST00000636172 WDR78Q5VTH9 848 aa23.48■■□□□ 1.35
CLN3-245ENST00000636172 CLEC17AQ6ZS10 378 aa23.48■■□□□ 1.35
CLN3-245ENST00000636172 ZNF396Q96N95 335 aaPredicted RBP23.48■■□□□ 1.35
CLN3-245ENST00000636172 PCNTO95613 3336 aa23.47■■□□□ 1.35
CLN3-245ENST00000636172 EDIL3O43854 480 aa23.47■■□□□ 1.35
CLN3-245ENST00000636172 ATP2B1P20020 1258 aa23.47■■□□□ 1.35
CLN3-245ENST00000636172 SREBF1P36956 1147 aa23.47■■□□□ 1.35
CLN3-245ENST00000636172 CRYGNQ8WXF5 182 aa23.47■■□□□ 1.35
CLN3-245ENST00000636172 PURBQ96QR8 312 aaKnown RBP23.47■■□□□ 1.35
CLN3-245ENST00000636172 USP28Q96RU2 1077 aa23.47■■□□□ 1.35
CLN3-245ENST00000636172 TFIP11Q9UBB9 837 aaKnown RBP23.47■■□□□ 1.35
CLN3-245ENST00000636172 RPTORQ8N122 1335 aa23.47■■□□□ 1.35
CLN3-245ENST00000636172 ATL3Q6DD88 541 aa23.46■■□□□ 1.35
CLN3-245ENST00000636172 NEK8Q86SG6 692 aa23.46■■□□□ 1.35
CLN3-245ENST00000636172 CCAR1Q8IX12 1150 aaKnown RBP23.46■■□□□ 1.35
CLN3-245ENST00000636172 TAAR1Q96RJ0 339 aa23.46■■□□□ 1.35
CLN3-245ENST00000636172 MMP19Q99542 508 aa23.46■■□□□ 1.35
CLN3-245ENST00000636172 RNF186Q9NXI6 227 aa23.46■■□□□ 1.35
CLN3-245ENST00000636172 CNPY2Q9Y2B0 182 aa23.46■■□□□ 1.35
CLN3-245ENST00000636172 FRMPD4Q14CM0 1322 aa23.46■■□□□ 1.35
CLN3-245ENST00000636172 ZNFX1Q9P2E3 1918 aaKnown RBP23.46■■□□□ 1.35
CLN3-245ENST00000636172 FCER1AP12319 257 aa23.45■■□□□ 1.34
CLN3-245ENST00000636172 MAPK4P31152 587 aa23.45■■□□□ 1.34
CLN3-245ENST00000636172 KRT85P78386 507 aa23.45■■□□□ 1.34
CLN3-245ENST00000636172 KCTD2Q14681 263 aa23.45■■□□□ 1.34
CLN3-245ENST00000636172 TTC38Q5R3I4 469 aa23.45■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms