RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 CCT2P78371 535 aaKnown RBP20.92■□□□□ 0.94
CLN3-239ENST00000628023 LHX8Q68G74 356 aa20.92■□□□□ 0.94
CLN3-239ENST00000628023 DHX30Q7L2E3 1194 aaKnown RBP eCLIP20.92■□□□□ 0.94
CLN3-239ENST00000628023 A1CFQ9NQ94 594 aaKnown RBP20.92■□□□□ 0.94
CLN3-239ENST00000628023 ZMYND8Q9ULU4 1186 aaPredicted RBP20.92■□□□□ 0.94
CLN3-239ENST00000628023 MRPL11Q9Y3B7 192 aaKnown RBP20.92■□□□□ 0.94
CLN3-239ENST00000628023 PTPDC1A2A3K4 754 aa20.91■□□□□ 0.94
CLN3-239ENST00000628023 PDIA3P30101 505 aaKnown RBP20.91■□□□□ 0.94
CLN3-239ENST00000628023 CDC27P30260 824 aa20.91■□□□□ 0.94
CLN3-239ENST00000628023 EVCP57679 992 aa20.91■□□□□ 0.94
CLN3-239ENST00000628023 STK3Q13188 491 aa20.91■□□□□ 0.94
CLN3-239ENST00000628023 NID2Q14112 1375 aa20.91■□□□□ 0.94
CLN3-239ENST00000628023 NPLOC4Q8TAT6 608 aa20.91■□□□□ 0.94
CLN3-239ENST00000628023 CNTNAP5Q8WYK1 1306 aa20.91■□□□□ 0.94
CLN3-239ENST00000628023 PCDHA1Q9Y5I3 950 aa20.91■□□□□ 0.94
CLN3-239ENST00000628023 POTEB2H3BUK9 544 aa20.9■□□□□ 0.94
CLN3-239ENST00000628023 BMP8BP34820 402 aa20.9■□□□□ 0.94
CLN3-239ENST00000628023 ADD1P35611 737 aaKnown RBP20.9■□□□□ 0.94
CLN3-239ENST00000628023 CLEC4DQ8WXI8 215 aa20.9■□□□□ 0.94
CLN3-239ENST00000628023 ZNF274Q96GC6 653 aaPredicted RBP20.9■□□□□ 0.94
CLN3-239ENST00000628023 TBC1D32Q96NH3 1257 aa20.9■□□□□ 0.94
CLN3-239ENST00000628023 ALDH8A1Q9H2A2 487 aaPredicted RBP20.9■□□□□ 0.94
CLN3-239ENST00000628023 FLRT1Q9NZU1 646 aa20.9■□□□□ 0.94
CLN3-239ENST00000628023 RANBP2P49792 3224 aaKnown RBP20.9■□□□□ 0.94
CLN3-239ENST00000628023 ALPK3Q96L96 1907 aa20.89■□□□□ 0.93
CLN3-239ENST00000628023 hCG_1642624A0A1W2PR95 340 aa20.89■□□□□ 0.93
CLN3-239ENST00000628023 CPLX1O14810 134 aa20.89■□□□□ 0.93
CLN3-239ENST00000628023 PPP1R11O60927 126 aaPredicted RBP20.89■□□□□ 0.93
CLN3-239ENST00000628023 OLFML2BQ68BL8 750 aa20.89■□□□□ 0.93
CLN3-239ENST00000628023 RNF207Q6ZRF8 634 aa20.89■□□□□ 0.93
CLN3-239ENST00000628023 MCF2L2Q86YR7 1114 aa20.89■□□□□ 0.93
CLN3-239ENST00000628023 MAML3Q96JK9 1138 aa20.89■□□□□ 0.93
CLN3-239ENST00000628023 GDF15Q99988 308 aa20.89■□□□□ 0.93
CLN3-239ENST00000628023 SLKQ9H2G2 1235 aaPredicted RBP20.89■□□□□ 0.93
CLN3-239ENST00000628023 NCOA5Q9HCD5 579 aaKnown RBP20.89■□□□□ 0.93
CLN3-239ENST00000628023 FAM217BQ9NTX9 383 aaPredicted RBP20.89■□□□□ 0.93
CLN3-239ENST00000628023 DDX20Q9UHI6 824 aaKnown RBP20.89■□□□□ 0.93
CLN3-239ENST00000628023 SMCHD1A6NHR9 2005 aa20.88■□□□□ 0.93
CLN3-239ENST00000628023 ZNFX1Q9P2E3 1918 aaKnown RBP20.88■□□□□ 0.93
CLN3-239ENST00000628023 COL6A1P12109 1028 aa20.88■□□□□ 0.93
CLN3-239ENST00000628023 SYN1P17600 705 aa20.88■□□□□ 0.93
CLN3-239ENST00000628023 CALML3P27482 149 aa20.88■□□□□ 0.93
CLN3-239ENST00000628023 CYP2C19P33261 490 aa20.88■□□□□ 0.93
CLN3-239ENST00000628023 AKAP17AQ02040 695 aaKnown RBP20.88■□□□□ 0.93
CLN3-239ENST00000628023 BAATQ14032 418 aaPredicted RBP20.88■□□□□ 0.93
CLN3-239ENST00000628023 RABEP1Q15276 862 aa20.88■□□□□ 0.93
CLN3-239ENST00000628023 ZNF792Q3KQV3 632 aa20.88■□□□□ 0.93
CLN3-239ENST00000628023 CPLX2Q6PUV4 134 aaKnown RBP20.88■□□□□ 0.93
CLN3-239ENST00000628023 HEATR3Q7Z4Q2 680 aa20.88■□□□□ 0.93
CLN3-239ENST00000628023 KIF2CQ99661 725 aa20.88■□□□□ 0.93
CLN3-239ENST00000628023 CYP39A1Q9NYL5 469 aa20.88■□□□□ 0.93
CLN3-239ENST00000628023 TPCN1Q9ULQ1 816 aa20.88■□□□□ 0.93
CLN3-239ENST00000628023 DIS3Q9Y2L1 958 aaKnown RBP20.88■□□□□ 0.93
CLN3-239ENST00000628023 DNAJC25-GNG10A0A024R161 153 aa20.87■□□□□ 0.93
CLN3-239ENST00000628023 SLC30A10Q6XR72 485 aa20.87■□□□□ 0.93
CLN3-239ENST00000628023 PLXNA1Q9UIW2 1896 aa20.86■□□□□ 0.93
CLN3-239ENST00000628023 RPS6P62753 249 aaKnown RBP20.86■□□□□ 0.93
CLN3-239ENST00000628023 CNTN2Q02246 1040 aa20.86■□□□□ 0.93
CLN3-239ENST00000628023 FUT2Q10981 343 aa20.86■□□□□ 0.93
CLN3-239ENST00000628023 SENP6Q9GZR1 1112 aaPredicted RBP20.86■□□□□ 0.93
CLN3-239ENST00000628023 V9GY48 417 aaPredicted RBP20.86■□□□□ 0.93
CLN3-239ENST00000628023 ST18O60284 1047 aa20.85■□□□□ 0.93
CLN3-239ENST00000628023 CFBP00751 764 aa20.85■□□□□ 0.93
CLN3-239ENST00000628023 FAM133AQ8N9E0 248 aa20.85■□□□□ 0.93
CLN3-239ENST00000628023 ARRDC4Q8NCT1 418 aa20.85■□□□□ 0.93
CLN3-239ENST00000628023 PHKBQ93100 1093 aa20.85■□□□□ 0.93
CLN3-239ENST00000628023 SLC26A6Q9BXS9 759 aa20.85■□□□□ 0.93
CLN3-239ENST00000628023 DNM1LO00429 736 aa20.84■□□□□ 0.93
CLN3-239ENST00000628023 PFKFB2O60825 505 aa20.84■□□□□ 0.93
CLN3-239ENST00000628023 PPFIA3O75145 1194 aa20.84■□□□□ 0.93
CLN3-239ENST00000628023 CYBAP13498 195 aa20.84■□□□□ 0.93
CLN3-239ENST00000628023 MAGEA10P43363 369 aaPredicted RBP20.84■□□□□ 0.93
CLN3-239ENST00000628023 SCRN1Q12765 414 aa20.84■□□□□ 0.93
CLN3-239ENST00000628023 LRRC26Q2I0M4 334 aa20.84■□□□□ 0.93
CLN3-239ENST00000628023 ZNF467Q7Z7K2 595 aaPredicted RBP20.84■□□□□ 0.93
CLN3-239ENST00000628023 TRIM22Q8IYM9 498 aa20.84■□□□□ 0.93
CLN3-239ENST00000628023 RGS22Q8NE09 1264 aa20.84■□□□□ 0.93
CLN3-239ENST00000628023 GPKOWQ92917 476 aaPredicted RBP eCLIP20.84■□□□□ 0.93
CLN3-239ENST00000628023 TINF2Q9BSI4 451 aa20.84■□□□□ 0.93
CLN3-239ENST00000628023 UBE2OQ9C0C9 1292 aaKnown RBP20.84■□□□□ 0.93
CLN3-239ENST00000628023 MAF1Q9H063 256 aa20.84■□□□□ 0.93
CLN3-239ENST00000628023 ADD3Q9UEY8 706 aaKnown RBP20.84■□□□□ 0.93
CLN3-239ENST00000628023 CDKL5O76039 1030 aa20.83■□□□□ 0.93
CLN3-239ENST00000628023 IFNAR1P17181 557 aa20.83■□□□□ 0.93
CLN3-239ENST00000628023 NAPAP54920 295 aa20.83■□□□□ 0.93
CLN3-239ENST00000628023 MSL3Q8N5Y2 521 aaKnown RBP20.83■□□□□ 0.93
CLN3-239ENST00000628023 CUL5Q93034 780 aa20.83■□□□□ 0.93
CLN3-239ENST00000628023 PURBQ96QR8 312 aaKnown RBP20.83■□□□□ 0.93
CLN3-239ENST00000628023 MPHOSPH6Q99547 160 aaKnown RBP20.83■□□□□ 0.93
CLN3-239ENST00000628023 RNF26Q9BY78 433 aaPredicted RBP20.83■□□□□ 0.93
CLN3-239ENST00000628023 CNPY2Q9Y2B0 182 aa20.83■□□□□ 0.93
CLN3-239ENST00000628023 SYNGAP1Q96PV0 1343 aa20.82■□□□□ 0.92
CLN3-239ENST00000628023 SOWAHBA6NEL2 793 aa20.82■□□□□ 0.92
CLN3-239ENST00000628023 ASB14A6NK59 587 aa20.82■□□□□ 0.92
CLN3-239ENST00000628023 KBTBD13C9JR72 458 aa20.82■□□□□ 0.92
CLN3-239ENST00000628023 GCOM1H8Y6P7 765 aaPredicted RBP20.82■□□□□ 0.92
CLN3-239ENST00000628023 SEPT4O43236 478 aa20.82■□□□□ 0.92
CLN3-239ENST00000628023 POLR2MP0CAP2 368 aa20.82■□□□□ 0.92
CLN3-239ENST00000628023 SSRP1Q08945 709 aaKnown RBP20.82■□□□□ 0.92
CLN3-239ENST00000628023 NTRK3Q16288 839 aa20.82■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms