RNA–Protein interactions for RNA: ENST00000621325.1

LIME1-210, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 2,410 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-210ENST00000621325 BAG6P46379 1132 aa23.95■■□□□ 1.43
LIME1-210ENST00000621325 USP17L24Q0WX57 530 aa23.95■■□□□ 1.43
LIME1-210ENST00000621325 USP17L6PQ6QN14 398 aa23.95■■□□□ 1.43
LIME1-210ENST00000621325 NELFBQ8WX92 580 aa23.95■■□□□ 1.43
LIME1-210ENST00000621325 VIL1P09327 827 aaKnown RBP23.95■■□□□ 1.42
LIME1-210ENST00000621325 MRPL12P52815 198 aaKnown RBP23.95■■□□□ 1.42
LIME1-210ENST00000621325 PAK1Q13153 545 aa23.95■■□□□ 1.42
LIME1-210ENST00000621325 ORC2Q13416 577 aaPredicted RBP23.95■■□□□ 1.42
LIME1-210ENST00000621325 TSC1Q92574 1164 aa23.95■■□□□ 1.42
LIME1-210ENST00000621325 GJA10Q969M2 543 aa23.95■■□□□ 1.42
LIME1-210ENST00000621325 PCDHA1Q9Y5I3 950 aa23.95■■□□□ 1.42
LIME1-210ENST00000621325 A0A1W2PRG0 241 aa23.94■■□□□ 1.42
LIME1-210ENST00000621325 RBM26Q5T8P6 1007 aaKnown RBP23.94■■□□□ 1.42
LIME1-210ENST00000621325 SPECC1LQ69YQ0 1117 aa23.94■■□□□ 1.42
LIME1-210ENST00000621325 NYAP1Q6ZVC0 841 aa23.94■■□□□ 1.42
LIME1-210ENST00000621325 RWDD2AQ9UIY3 292 aa23.94■■□□□ 1.42
LIME1-210ENST00000621325 RIOK3O14730 519 aaKnown RBP23.94■■□□□ 1.42
LIME1-210ENST00000621325 SF3B2Q13435 895 aaKnown RBP23.94■■□□□ 1.42
LIME1-210ENST00000621325 TMX1Q9H3N1 280 aa23.94■■□□□ 1.42
LIME1-210ENST00000621325 POTEMA6NI47 508 aa23.93■■□□□ 1.42
LIME1-210ENST00000621325 TAL1P17542 331 aaPredicted RBP23.93■■□□□ 1.42
LIME1-210ENST00000621325 DHX8Q14562 1220 aaKnown RBP23.93■■□□□ 1.42
LIME1-210ENST00000621325 CDAN1Q8IWY9 1227 aa23.93■■□□□ 1.42
LIME1-210ENST00000621325 ZNF70Q9UC06 446 aaPredicted RBP23.93■■□□□ 1.42
LIME1-210ENST00000621325 ADD3Q9UEY8 706 aaKnown RBP23.93■■□□□ 1.42
LIME1-210ENST00000621325 LRWD1Q9UFC0 647 aa23.93■■□□□ 1.42
LIME1-210ENST00000621325 DLGAP5Q15398 846 aa23.93■■□□□ 1.42
LIME1-210ENST00000621325 UIMC1Q96RL1 719 aa23.93■■□□□ 1.42
LIME1-210ENST00000621325 XPO5Q9HAV4 1204 aaKnown RBP eCLIP23.93■■□□□ 1.422e-6■■■■■ 27.8
LIME1-210ENST00000621325 KCND1Q9NSA2 647 aa23.93■■□□□ 1.42
LIME1-210ENST00000621325 ATF5Q9Y2D1 282 aaPredicted RBP23.93■■□□□ 1.42
LIME1-210ENST00000621325 TRIM49BA6NDI0 452 aa23.92■■□□□ 1.42
LIME1-210ENST00000621325 ADKP55263 362 aaKnown RBP23.92■■□□□ 1.42
LIME1-210ENST00000621325 GRB10Q13322 594 aa23.92■■□□□ 1.42
LIME1-210ENST00000621325 SPICE1Q8N0Z3 855 aa23.92■■□□□ 1.42
LIME1-210ENST00000621325 ADSSL1Q8N142 457 aa23.92■■□□□ 1.42
LIME1-210ENST00000621325 GMCL1P1Q8NEA9 526 aa23.92■■□□□ 1.42
LIME1-210ENST00000621325 TMOD2Q9NZR1 351 aa23.92■■□□□ 1.42
LIME1-210ENST00000621325 FXR2P51116 673 aaKnown RBP eCLIP23.92■■□□□ 1.42
LIME1-210ENST00000621325 PMS1P54277 932 aaKnown RBP23.92■■□□□ 1.42
LIME1-210ENST00000621325 KCNB1Q14721 858 aa23.92■■□□□ 1.42
LIME1-210ENST00000621325 TMEM139Q8IV31 216 aa23.92■■□□□ 1.42
LIME1-210ENST00000621325 ZNF592Q92610 1267 aa23.92■■□□□ 1.42
LIME1-210ENST00000621325 NUDT12Q9BQG2 462 aa23.92■■□□□ 1.42
LIME1-210ENST00000621325 TRIM9Q9C026 710 aa23.92■■□□□ 1.42
LIME1-210ENST00000621325 CUEDC2Q9H467 287 aa23.92■■□□□ 1.42
LIME1-210ENST00000621325 PSME4Q14997 1843 aa23.92■■□□□ 1.42
LIME1-210ENST00000621325 PTPN14Q15678 1187 aa23.91■■□□□ 1.42
LIME1-210ENST00000621325 GRIPAP1Q4V328 841 aa23.91■■□□□ 1.42
LIME1-210ENST00000621325 PPP4R3AQ6IN85 833 aa23.91■■□□□ 1.42
LIME1-210ENST00000621325 TC2NQ8N9U0 490 aa23.91■■□□□ 1.42
LIME1-210ENST00000621325 HAS1Q92839 578 aa23.91■■□□□ 1.42
LIME1-210ENST00000621325 PNMA5Q96PV4 448 aa23.91■■□□□ 1.42
LIME1-210ENST00000621325 DDX25Q9UHL0 483 aaKnown RBP23.91■■□□□ 1.42
LIME1-210ENST00000621325 RHOBTB3O94955 611 aa23.91■■□□□ 1.42
LIME1-210ENST00000621325 ECE1P42892 770 aa23.91■■□□□ 1.42
LIME1-210ENST00000621325 CEP135Q66GS9 1140 aa23.91■■□□□ 1.42
LIME1-210ENST00000621325 GMCL1Q96IK5 515 aa23.91■■□□□ 1.42
LIME1-210ENST00000621325 PPP1R13BQ96KQ4 1090 aa23.91■■□□□ 1.42
LIME1-210ENST00000621325 P2RX7Q99572 595 aaKnown RBP23.91■■□□□ 1.42
LIME1-210ENST00000621325 MYH7BA7E2Y1 1941 aa23.91■■□□□ 1.42
LIME1-210ENST00000621325 CNTNAP1P78357 1384 aa23.9■■□□□ 1.42
LIME1-210ENST00000621325 MYL1P05976 194 aa23.9■■□□□ 1.42
LIME1-210ENST00000621325 CCT6AP40227 531 aaKnown RBP23.9■■□□□ 1.42
LIME1-210ENST00000621325 IKQ13123 557 aaPredicted RBP23.9■■□□□ 1.42
LIME1-210ENST00000621325 OGFOD1Q8N543 542 aa23.9■■□□□ 1.42
LIME1-210ENST00000621325 COL2A1P02458 1487 aaPredicted RBP23.9■■□□□ 1.42
LIME1-210ENST00000621325 KRT31Q15323 416 aa23.9■■□□□ 1.42
LIME1-210ENST00000621325 CALML4Q96GE6 196 aa23.9■■□□□ 1.42
LIME1-210ENST00000621325 VEZTQ9HBM0 779 aa23.9■■□□□ 1.42
LIME1-210ENST00000621325 BLOC1S4Q9NUP1 217 aa23.9■■□□□ 1.42
LIME1-210ENST00000621325 NRDCO43847 1150 aa23.89■■□□□ 1.42
LIME1-210ENST00000621325 TMEM266Q2M3C6 531 aa23.89■■□□□ 1.42
LIME1-210ENST00000621325 USH1GQ495M9 461 aa23.89■■□□□ 1.42
LIME1-210ENST00000621325 GIMAP8Q8ND71 665 aaPredicted RBP23.89■■□□□ 1.42
LIME1-210ENST00000621325 MAGEF1Q9HAY2 307 aa23.89■■□□□ 1.42
LIME1-210ENST00000621325 FRMD4AQ9P2Q2 1039 aaPredicted RBP23.89■■□□□ 1.42
LIME1-210ENST00000621325 HDAC9Q9UKV0 1011 aa23.89■■□□□ 1.42
LIME1-210ENST00000621325 PBX1P40424 430 aa23.89■■□□□ 1.41
LIME1-210ENST00000621325 KIAA1755Q5JYT7 1200 aa23.89■■□□□ 1.41
LIME1-210ENST00000621325 CREBRFQ8IUR6 639 aa23.89■■□□□ 1.41
LIME1-210ENST00000621325 CCDC112Q8NEF3 446 aa23.89■■□□□ 1.41
LIME1-210ENST00000621325 ACER1Q8TDN7 264 aa23.89■■□□□ 1.41
LIME1-210ENST00000621325 FAM151AQ8WW52 585 aa23.89■■□□□ 1.41
LIME1-210ENST00000621325 HERC5Q9UII4 1024 aaKnown RBP23.89■■□□□ 1.41
LIME1-210ENST00000621325 MEIS2O14770 477 aa23.88■■□□□ 1.41
LIME1-210ENST00000621325 BMP3P12645 472 aa23.88■■□□□ 1.41
LIME1-210ENST00000621325 KCNJ6P48051 423 aa23.88■■□□□ 1.41
LIME1-210ENST00000621325 ASIC1P78348 528 aa23.88■■□□□ 1.41
LIME1-210ENST00000621325 SPDYE2Q495Y8 402 aa23.88■■□□□ 1.41
LIME1-210ENST00000621325 SYDE2Q5VT97 1194 aa23.88■■□□□ 1.41
LIME1-210ENST00000621325 C7orf25Q9BPX7 421 aa23.88■■□□□ 1.41
LIME1-210ENST00000621325 TMEM39BQ9GZU3 492 aa23.88■■□□□ 1.41
LIME1-210ENST00000621325 GTF2F1P35269 517 aaKnown RBP eCLIP23.88■■□□□ 1.413e-6■□□□□ 10.3
LIME1-210ENST00000621325 MCM6Q14566 821 aa23.88■■□□□ 1.41
LIME1-210ENST00000621325 HPS3Q969F9 1004 aa23.88■■□□□ 1.41
LIME1-210ENST00000621325 CTAGE1Q96RT6 745 aa23.88■■□□□ 1.41
LIME1-210ENST00000621325 ZNRF3Q9ULT6 936 aa23.88■■□□□ 1.41
LIME1-210ENST00000621325 ARFGEF1Q9Y6D6 1849 aa23.87■■□□□ 1.41
LIME1-210ENST00000621325 PSDA5PKW4 1024 aaPredicted RBP23.87■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms