RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 DOCK3Q8IZD9 2030 aa22.72■■□□□ 1.23
UPF3A-211ENST00000618700 ADORA2AP29274 412 aa22.71■■□□□ 1.23
UPF3A-211ENST00000618700 NAPAP54920 295 aa22.71■■□□□ 1.23
UPF3A-211ENST00000618700 HMGN5P82970 282 aaKnown RBP22.71■■□□□ 1.23
UPF3A-211ENST00000618700 KCTD2Q14681 263 aa22.71■■□□□ 1.23
UPF3A-211ENST00000618700 USP6NLQ92738 828 aa22.71■■□□□ 1.23
UPF3A-211ENST00000618700 DDX11Q96FC9 970 aa22.71■■□□□ 1.23
UPF3A-211ENST00000618700 AIFM3Q96NN9 605 aa22.71■■□□□ 1.23
UPF3A-211ENST00000618700 SH3GLB2Q9NR46 395 aa22.71■■□□□ 1.23
UPF3A-211ENST00000618700 GJD2Q9UKL4 321 aa22.71■■□□□ 1.23
UPF3A-211ENST00000618700 PFASO15067 1338 aa22.71■■□□□ 1.23
UPF3A-211ENST00000618700 DNAJC25-GNG10A0A024R161 153 aa22.7■■□□□ 1.22
UPF3A-211ENST00000618700 ESYT2A0FGR8 921 aa22.7■■□□□ 1.22
UPF3A-211ENST00000618700 ARHGEF6Q15052 776 aa22.7■■□□□ 1.22
UPF3A-211ENST00000618700 SLC30A10Q6XR72 485 aa22.7■■□□□ 1.22
UPF3A-211ENST00000618700 MCF2L2Q86YR7 1114 aa22.7■■□□□ 1.22
UPF3A-211ENST00000618700 FAM177A1Q8N128 213 aaPredicted RBP22.7■■□□□ 1.22
UPF3A-211ENST00000618700 ANKRD35Q8N283 1001 aa22.7■■□□□ 1.22
UPF3A-211ENST00000618700 WASF1Q92558 559 aa22.7■■□□□ 1.22
UPF3A-211ENST00000618700 LCTP09848 1927 aa22.7■■□□□ 1.22
UPF3A-211ENST00000618700 HSD17B4P51659 736 aa22.69■■□□□ 1.22
UPF3A-211ENST00000618700 PRKCZQ05513 592 aa22.69■■□□□ 1.22
UPF3A-211ENST00000618700 MAP2K5Q13163 448 aa22.69■■□□□ 1.22
UPF3A-211ENST00000618700 NSMFQ6X4W1 530 aa22.69■■□□□ 1.22
UPF3A-211ENST00000618700 OTOP1Q7RTM1 612 aa22.69■■□□□ 1.22
UPF3A-211ENST00000618700 SAMD3Q8N6K7 520 aa22.69■■□□□ 1.22
UPF3A-211ENST00000618700 TBC1D5Q92609 795 aa22.69■■□□□ 1.22
UPF3A-211ENST00000618700 INTS4Q96HW7 963 aaKnown RBP22.69■■□□□ 1.22
UPF3A-211ENST00000618700 VPS54Q9P1Q0 977 aa22.69■■□□□ 1.22
UPF3A-211ENST00000618700 SRRDQ9UH36 339 aa22.69■■□□□ 1.22
UPF3A-211ENST00000618700 ZSCAN21Q9Y5A6 473 aaPredicted RBP22.69■■□□□ 1.22
UPF3A-211ENST00000618700 CD44P16070 742 aaKnown RBP22.68■■□□□ 1.22
UPF3A-211ENST00000618700 RPS6P62753 249 aaKnown RBP22.68■■□□□ 1.22
UPF3A-211ENST00000618700 BAATQ14032 418 aaPredicted RBP22.68■■□□□ 1.22
UPF3A-211ENST00000618700 IFNLR1Q8IU57 520 aaPredicted RBP22.68■■□□□ 1.22
UPF3A-211ENST00000618700 TEX2Q8IWB9 1127 aa22.68■■□□□ 1.22
UPF3A-211ENST00000618700 CCDC148Q8NFR7 591 aa22.68■■□□□ 1.22
UPF3A-211ENST00000618700 CCDC12Q8WUD4 166 aaPredicted RBP22.68■■□□□ 1.22
UPF3A-211ENST00000618700 NUDT12Q9BQG2 462 aa22.68■■□□□ 1.22
UPF3A-211ENST00000618700 ALG1Q9BT22 464 aa22.68■■□□□ 1.22
UPF3A-211ENST00000618700 ZMYND12Q9H0C1 365 aa22.68■■□□□ 1.22
UPF3A-211ENST00000618700 GABRQQ9UN88 632 aa22.68■■□□□ 1.22
UPF3A-211ENST00000618700 HTTP42858 3142 aa22.67■■□□□ 1.22
UPF3A-211ENST00000618700 PIK3CDO00329 1044 aa22.67■■□□□ 1.22
UPF3A-211ENST00000618700 COBLO75128 1261 aa22.67■■□□□ 1.22
UPF3A-211ENST00000618700 HOXC6P09630 235 aa22.67■■□□□ 1.22
UPF3A-211ENST00000618700 HOXD10P28358 340 aa22.67■■□□□ 1.22
UPF3A-211ENST00000618700 RNF207Q6ZRF8 634 aa22.67■■□□□ 1.22
UPF3A-211ENST00000618700 FAM133AQ8N9E0 248 aa22.67■■□□□ 1.22
UPF3A-211ENST00000618700 PSTPIP2Q9H939 334 aa22.67■■□□□ 1.22
UPF3A-211ENST00000618700 MAP3K20Q9NYL2 800 aaKnown RBP22.67■■□□□ 1.22
UPF3A-211ENST00000618700 ZNFX1Q9P2E3 1918 aaKnown RBP22.67■■□□□ 1.22
UPF3A-211ENST00000618700 MEIS2O14770 477 aa22.66■■□□□ 1.22
UPF3A-211ENST00000618700 CFBP00751 764 aa22.66■■□□□ 1.22
UPF3A-211ENST00000618700 PGK2P07205 417 aa22.66■■□□□ 1.22
UPF3A-211ENST00000618700 RGS2P41220 211 aa22.66■■□□□ 1.22
UPF3A-211ENST00000618700 FLT3LGP49771 235 aa22.66■■□□□ 1.22
UPF3A-211ENST00000618700 ADCY7P51828 1080 aa22.66■■□□□ 1.22
UPF3A-211ENST00000618700 PRMT2P55345 433 aa22.66■■□□□ 1.22
UPF3A-211ENST00000618700 IRF5Q13568 498 aa22.66■■□□□ 1.22
UPF3A-211ENST00000618700 NPY5RQ15761 445 aa22.66■■□□□ 1.22
UPF3A-211ENST00000618700 SYTL5Q8TDW5 730 aaPredicted RBP22.66■■□□□ 1.22
UPF3A-211ENST00000618700 FGD4Q96M96 766 aa22.66■■□□□ 1.22
UPF3A-211ENST00000618700 APBA2Q99767 749 aa22.66■■□□□ 1.22
UPF3A-211ENST00000618700 RIC8AQ9NPQ8 531 aa22.66■■□□□ 1.22
UPF3A-211ENST00000618700 TRIM17Q9Y577 477 aa22.66■■□□□ 1.22
UPF3A-211ENST00000618700 ASTN1O14525 1302 aa22.65■■□□□ 1.22
UPF3A-211ENST00000618700 PLXNA1Q9UIW2 1896 aa22.65■■□□□ 1.22
UPF3A-211ENST00000618700 SMCO2A6NFE2 343 aa22.65■■□□□ 1.22
UPF3A-211ENST00000618700 POTEB2H3BUK9 544 aa22.65■■□□□ 1.22
UPF3A-211ENST00000618700 GCOM1H8Y6P7 765 aaPredicted RBP22.65■■□□□ 1.22
UPF3A-211ENST00000618700 POLR2MP0CAP2 368 aa22.65■■□□□ 1.22
UPF3A-211ENST00000618700 GJB2P29033 226 aa22.65■■□□□ 1.22
UPF3A-211ENST00000618700 CNTN2Q02246 1040 aa22.65■■□□□ 1.22
UPF3A-211ENST00000618700 ZNF792Q3KQV3 632 aa22.65■■□□□ 1.22
UPF3A-211ENST00000618700 CUL5Q93034 780 aa22.65■■□□□ 1.22
UPF3A-211ENST00000618700 PHF20Q9BVI0 1012 aa22.65■■□□□ 1.22
UPF3A-211ENST00000618700 GLT8D2Q9H1C3 349 aa22.65■■□□□ 1.22
UPF3A-211ENST00000618700 GJB4Q9NTQ9 266 aa22.65■■□□□ 1.22
UPF3A-211ENST00000618700 COL20A1Q9P218 1284 aa22.65■■□□□ 1.22
UPF3A-211ENST00000618700 SMC3Q9UQE7 1217 aa22.65■■□□□ 1.22
UPF3A-211ENST00000618700 XRCC5P13010 732 aaKnown RBP22.64■■□□□ 1.21
UPF3A-211ENST00000618700 XBP1P17861 261 aa22.64■■□□□ 1.21
UPF3A-211ENST00000618700 CALML3P27482 149 aa22.64■■□□□ 1.21
UPF3A-211ENST00000618700 HOXA13P31271 388 aaPredicted RBP22.64■■□□□ 1.21
UPF3A-211ENST00000618700 USP17L6PQ6QN14 398 aa22.64■■□□□ 1.21
UPF3A-211ENST00000618700 CTU1Q7Z7A3 348 aaKnown RBP22.64■■□□□ 1.21
UPF3A-211ENST00000618700 FAM184AQ8NB25 1140 aa22.64■■□□□ 1.21
UPF3A-211ENST00000618700 NPLOC4Q8TAT6 608 aa22.64■■□□□ 1.21
UPF3A-211ENST00000618700 DIS3Q9Y2L1 958 aaKnown RBP22.64■■□□□ 1.21
UPF3A-211ENST00000618700 CLK2P49760 499 aaKnown RBP22.63■■□□□ 1.21
UPF3A-211ENST00000618700 MRPL12P52815 198 aaKnown RBP22.63■■□□□ 1.21
UPF3A-211ENST00000618700 NLRP5P59047 1200 aa22.63■■□□□ 1.21
UPF3A-211ENST00000618700 UBE2SQ16763 222 aa22.63■■□□□ 1.21
UPF3A-211ENST00000618700 DPP9Q86TI2 863 aa22.63■■□□□ 1.21
UPF3A-211ENST00000618700 DAGLBQ8NCG7 672 aa22.63■■□□□ 1.21
UPF3A-211ENST00000618700 PURBQ96QR8 312 aaKnown RBP22.63■■□□□ 1.21
UPF3A-211ENST00000618700 C6orf50Q9HD87 102 aa22.63■■□□□ 1.21
UPF3A-211ENST00000618700 TSHZ2Q9NRE2 1034 aa22.63■■□□□ 1.21
UPF3A-211ENST00000618700 SLC5A4Q9NY91 659 aa22.63■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms