RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 UBXN6Q9BZV1 441 aa16.18■□□□□ 0.18
SHROOM1-208ENST00000617339 MRFAP1Q9Y605 127 aa16.18■□□□□ 0.18
SHROOM1-208ENST00000617339 CHMP4BP1P59074 171 aa16.18■□□□□ 0.18
SHROOM1-208ENST00000617339 MAP3K9P80192 1104 aa16.18■□□□□ 0.18
SHROOM1-208ENST00000617339 UBXN1Q04323 297 aa16.18■□□□□ 0.18
SHROOM1-208ENST00000617339 PDE4DQ08499 809 aa16.18■□□□□ 0.18
SHROOM1-208ENST00000617339 CRY2Q49AN0 593 aa16.18■□□□□ 0.18
SHROOM1-208ENST00000617339 FILIP1LQ4L180 1135 aa16.18■□□□□ 0.18
SHROOM1-208ENST00000617339 SLC27A3Q5K4L6 730 aa16.18■□□□□ 0.18
SHROOM1-208ENST00000617339 TBC1D22AQ8WUA7 517 aa16.18■□□□□ 0.18
SHROOM1-208ENST00000617339 TNFRSF25Q93038 417 aa16.18■□□□□ 0.18
SHROOM1-208ENST00000617339 ZNF277Q9NRM2 450 aaPredicted RBP16.18■□□□□ 0.18
SHROOM1-208ENST00000617339 EIF3CLB5ME19 914 aaKnown RBP16.18■□□□□ 0.18
SHROOM1-208ENST00000617339 FGRP09769 529 aa16.18■□□□□ 0.18
SHROOM1-208ENST00000617339 ZNF76P36508 570 aa16.18■□□□□ 0.18
SHROOM1-208ENST00000617339 SLC1A4P43007 532 aa16.18■□□□□ 0.18
SHROOM1-208ENST00000617339 PPP4CP60510 307 aa16.18■□□□□ 0.18
SHROOM1-208ENST00000617339 SPECC1LQ69YQ0 1117 aa16.18■□□□□ 0.18
SHROOM1-208ENST00000617339 C16orf86Q6ZW13 317 aa16.18■□□□□ 0.18
SHROOM1-208ENST00000617339 EIF3CQ99613 913 aaKnown RBP16.18■□□□□ 0.18
SHROOM1-208ENST00000617339 HINFPQ9BQA5 517 aa16.18■□□□□ 0.18
SHROOM1-208ENST00000617339 MTMR4Q9NYA4 1195 aa16.18■□□□□ 0.18
SHROOM1-208ENST00000617339 ATP8B1O43520 1251 aa16.17■□□□□ 0.18
SHROOM1-208ENST00000617339 PDHBP11177 359 aa16.17■□□□□ 0.18
SHROOM1-208ENST00000617339 ADRA2BP18089 450 aa16.17■□□□□ 0.18
SHROOM1-208ENST00000617339 POLD1P28340 1107 aa16.17■□□□□ 0.18
SHROOM1-208ENST00000617339 PMS1P54277 932 aaKnown RBP16.17■□□□□ 0.18
SHROOM1-208ENST00000617339 HSP90B2PQ58FF3 399 aa16.17■□□□□ 0.18
SHROOM1-208ENST00000617339 SP8Q8IXZ3 490 aa16.17■□□□□ 0.18
SHROOM1-208ENST00000617339 PALM3A6NDB9 673 aaPredicted RBP16.17■□□□□ 0.18
SHROOM1-208ENST00000617339 PCP11498 1178 aaKnown RBP16.17■□□□□ 0.18
SHROOM1-208ENST00000617339 IL1R1P14778 569 aa16.17■□□□□ 0.18
SHROOM1-208ENST00000617339 RABGGTAQ92696 567 aa16.17■□□□□ 0.18
SHROOM1-208ENST00000617339 GDAP1L1Q96MZ0 367 aa16.17■□□□□ 0.18
SHROOM1-208ENST00000617339 TUBB4AP04350 444 aa16.17■□□□□ 0.18
SHROOM1-208ENST00000617339 HOXA13P31271 388 aaPredicted RBP16.17■□□□□ 0.18
SHROOM1-208ENST00000617339 ADGRF4Q8IZF3 695 aa16.17■□□□□ 0.18
SHROOM1-208ENST00000617339 ABCB6Q9NP58 842 aa16.17■□□□□ 0.18
SHROOM1-208ENST00000617339 PKD2L1Q9P0L9 805 aa16.17■□□□□ 0.18
SHROOM1-208ENST00000617339 ARHGAP6O43182 974 aa16.16■□□□□ 0.18
SHROOM1-208ENST00000617339 NPR1P16066 1061 aa16.16■□□□□ 0.18
SHROOM1-208ENST00000617339 PNKPQ96T60 521 aa16.16■□□□□ 0.18
SHROOM1-208ENST00000617339 TCEAL9Q9UHQ7 104 aa16.16■□□□□ 0.18
SHROOM1-208ENST00000617339 KRT18P05783 430 aaKnown RBP16.16■□□□□ 0.18
SHROOM1-208ENST00000617339 KIF4BQ2VIQ3 1234 aa16.16■□□□□ 0.18
SHROOM1-208ENST00000617339 NUDT12Q9BQG2 462 aa16.16■□□□□ 0.18
SHROOM1-208ENST00000617339 LRWD1Q9UFC0 647 aa16.16■□□□□ 0.18
SHROOM1-208ENST00000617339 SLC37A4O43826 429 aa16.15■□□□□ 0.18
SHROOM1-208ENST00000617339 GNA11P29992 359 aa16.15■□□□□ 0.18
SHROOM1-208ENST00000617339 RSRC2Q7L4I2 434 aaKnown RBP16.15■□□□□ 0.18
SHROOM1-208ENST00000617339 NEK8Q86SG6 692 aa16.15■□□□□ 0.18
SHROOM1-208ENST00000617339 ZNF579Q8NAF0 562 aaKnown RBP16.15■□□□□ 0.18
SHROOM1-208ENST00000617339 COA1Q9GZY4 146 aa16.15■□□□□ 0.18
SHROOM1-208ENST00000617339 MRPL44Q9H9J2 332 aaKnown RBP16.15■□□□□ 0.18
SHROOM1-208ENST00000617339 PPP1R3GB7ZBB8 358 aa16.15■□□□□ 0.18
SHROOM1-208ENST00000617339 ECE2O60344 883 aa16.15■□□□□ 0.18
SHROOM1-208ENST00000617339 EEF2P13639 858 aaKnown RBP16.15■□□□□ 0.18
SHROOM1-208ENST00000617339 PAK1Q13153 545 aa16.15■□□□□ 0.18
SHROOM1-208ENST00000617339 CERKLQ49MI3 558 aaPredicted RBP16.15■□□□□ 0.18
SHROOM1-208ENST00000617339 ENOX1Q8TC92 643 aaKnown RBP16.15■□□□□ 0.18
SHROOM1-208ENST00000617339 MASTLQ96GX5 879 aa16.15■□□□□ 0.18
SHROOM1-208ENST00000617339 DISC1Q9NRI5 854 aa16.15■□□□□ 0.18
SHROOM1-208ENST00000617339 SPATA1Q5VX52 437 aa16.15■□□□□ 0.18
SHROOM1-208ENST00000617339 LRRC15Q8TF66 581 aa16.15■□□□□ 0.18
SHROOM1-208ENST00000617339 MTA3Q9BTC8 594 aa16.15■□□□□ 0.18
SHROOM1-208ENST00000617339 TANGO6Q9C0B7 1094 aa16.15■□□□□ 0.18
SHROOM1-208ENST00000617339 MEIS1O00470 390 aa16.14■□□□□ 0.17
SHROOM1-208ENST00000617339 IVLP07476 585 aa16.14■□□□□ 0.17
SHROOM1-208ENST00000617339 OR52Z1P0C646 297 aa16.14■□□□□ 0.17
SHROOM1-208ENST00000617339 CALCRLQ16602 461 aa16.14■□□□□ 0.17
SHROOM1-208ENST00000617339 CRAMP1Q96RY5 1269 aa16.14■□□□□ 0.17
SHROOM1-208ENST00000617339 IRS2Q9Y4H2 1338 aa16.14■□□□□ 0.17
SHROOM1-208ENST00000617339 NKRFO15226 690 aaKnown RBP eCLIP16.14■□□□□ 0.172e-7■□□□□ 8.4
SHROOM1-208ENST00000617339 SARSP49591 514 aaKnown RBP16.14■□□□□ 0.17
SHROOM1-208ENST00000617339 KRT31Q15323 416 aa16.14■□□□□ 0.17
SHROOM1-208ENST00000617339 ZNF569Q5MCW4 686 aa16.14■□□□□ 0.17
SHROOM1-208ENST00000617339 APOBEC3HQ6NTF7 200 aaKnown RBP16.14■□□□□ 0.17
SHROOM1-208ENST00000617339 HDXQ7Z353 690 aa16.14■□□□□ 0.17
SHROOM1-208ENST00000617339 MICALL1Q8N3F8 863 aa16.14■□□□□ 0.17
SHROOM1-208ENST00000617339 ACRBPQ8NEB7 543 aa16.14■□□□□ 0.17
SHROOM1-208ENST00000617339 FLAD1Q8NFF5 587 aa16.14■□□□□ 0.17
SHROOM1-208ENST00000617339 BPIFA3Q9BQP9 254 aa16.14■□□□□ 0.17
SHROOM1-208ENST00000617339 CACNA1SQ13698 1873 aa16.14■□□□□ 0.17
SHROOM1-208ENST00000617339 RNF225M0QZC1 329 aaPredicted RBP16.14■□□□□ 0.17
SHROOM1-208ENST00000617339 TTLL1O95922 423 aa16.14■□□□□ 0.17
SHROOM1-208ENST00000617339 BMP15O95972 392 aa16.14■□□□□ 0.17
SHROOM1-208ENST00000617339 STAT3P40763 770 aa16.14■□□□□ 0.17
SHROOM1-208ENST00000617339 ADCY7P51828 1080 aa16.14■□□□□ 0.17
SHROOM1-208ENST00000617339 STK4Q13043 487 aa16.14■□□□□ 0.17
SHROOM1-208ENST00000617339 CDAN1Q8IWY9 1227 aa16.14■□□□□ 0.17
SHROOM1-208ENST00000617339 NELFCDQ8IXH7 590 aa16.14■□□□□ 0.17
SHROOM1-208ENST00000617339 SLF1Q9BQI6 1058 aa16.14■□□□□ 0.17
SHROOM1-208ENST00000617339 PCDHA1Q9Y5I3 950 aa16.14■□□□□ 0.17
SHROOM1-208ENST00000617339 ABL1P00519 1130 aa16.13■□□□□ 0.17
SHROOM1-208ENST00000617339 KCNJ6P48051 423 aa16.13■□□□□ 0.17
SHROOM1-208ENST00000617339 KLK7P49862 253 aa16.13■□□□□ 0.17
SHROOM1-208ENST00000617339 FXR1P51114 621 aaKnown RBP eCLIP16.13■□□□□ 0.17
SHROOM1-208ENST00000617339 ANKRD20A12PQ8NF67 263 aa16.13■□□□□ 0.17
SHROOM1-208ENST00000617339 SNX29Q8TEQ0 813 aa16.13■□□□□ 0.17
SHROOM1-208ENST00000617339 PRMT6Q96LA8 375 aaPredicted RBP16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 204.5 ms