RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 MAP3K14Q99558 947 aa15.64■□□□□ 0.09
LINC00540-202ENST00000616974 BACH2Q9BYV9 841 aa15.64■□□□□ 0.09
LINC00540-202ENST00000616974 MYH7BA7E2Y1 1941 aa15.64■□□□□ 0.09
LINC00540-202ENST00000616974 ALPK3Q96L96 1907 aa15.64■□□□□ 0.09
LINC00540-202ENST00000616974 EVCP57679 992 aa15.64■□□□□ 0.09
LINC00540-202ENST00000616974 DHX30Q7L2E3 1194 aaKnown RBP eCLIP15.64■□□□□ 0.09
LINC00540-202ENST00000616974 NECAB1Q8N987 351 aa15.64■□□□□ 0.09
LINC00540-202ENST00000616974 TINF2Q9BSI4 451 aa15.64■□□□□ 0.09
LINC00540-202ENST00000616974 V9GY48 417 aaPredicted RBP15.64■□□□□ 0.09
LINC00540-202ENST00000616974 PNMA6FA0A0J9YX94 578 aa15.63■□□□□ 0.09
LINC00540-202ENST00000616974 POTEB2H3BUK9 544 aa15.63■□□□□ 0.09
LINC00540-202ENST00000616974 CFBP00751 764 aa15.63■□□□□ 0.09
LINC00540-202ENST00000616974 CYBAP13498 195 aa15.63■□□□□ 0.09
LINC00540-202ENST00000616974 KIF5BP33176 963 aa15.63■□□□□ 0.09
LINC00540-202ENST00000616974 UBXN2AP68543 259 aa15.63■□□□□ 0.09
LINC00540-202ENST00000616974 AMNQ9BXJ7 453 aa15.63■□□□□ 0.09
LINC00540-202ENST00000616974 SCRN1Q12765 414 aa15.62■□□□□ 0.09
LINC00540-202ENST00000616974 ME3Q16798 604 aa15.62■□□□□ 0.09
LINC00540-202ENST00000616974 WWC2Q6AWC2 1192 aa15.62■□□□□ 0.09
LINC00540-202ENST00000616974 USP17L6PQ6QN14 398 aa15.62■□□□□ 0.09
LINC00540-202ENST00000616974 RNF207Q6ZRF8 634 aa15.62■□□□□ 0.09
LINC00540-202ENST00000616974 AIFM3Q96NN9 605 aa15.62■□□□□ 0.09
LINC00540-202ENST00000616974 TAAR1Q96RJ0 339 aa15.62■□□□□ 0.09
LINC00540-202ENST00000616974 XRN2Q9H0D6 950 aaKnown RBP eCLIP15.62■□□□□ 0.09
LINC00540-202ENST00000616974 PAK6Q9NQU5 681 aaPredicted RBP15.62■□□□□ 0.09
LINC00540-202ENST00000616974 RBAK-RBAKDNI3L0D1 243 aa15.62■□□□□ 0.09
LINC00540-202ENST00000616974 CALM1P0DP23 149 aa15.62■□□□□ 0.09
LINC00540-202ENST00000616974 CALM2P0DP24 149 aa15.62■□□□□ 0.09
LINC00540-202ENST00000616974 CALM3P0DP25 149 aa15.62■□□□□ 0.09
LINC00540-202ENST00000616974 RBM25P49756 843 aaKnown RBP15.62■□□□□ 0.09
LINC00540-202ENST00000616974 PKN1Q16512 942 aa15.62■□□□□ 0.09
LINC00540-202ENST00000616974 SYNE3Q6ZMZ3 975 aa15.62■□□□□ 0.09
LINC00540-202ENST00000616974 ARMCX2Q7L311 632 aa15.62■□□□□ 0.09
LINC00540-202ENST00000616974 IL31RAQ8NI17 732 aa15.62■□□□□ 0.09
LINC00540-202ENST00000616974 SYTL5Q8TDW5 730 aaPredicted RBP15.62■□□□□ 0.09
LINC00540-202ENST00000616974 KATNBL1Q9H079 304 aa15.62■□□□□ 0.09
LINC00540-202ENST00000616974 PDGFCQ9NRA1 345 aa15.62■□□□□ 0.09
LINC00540-202ENST00000616974 GJB4Q9NTQ9 266 aa15.62■□□□□ 0.09
LINC00540-202ENST00000616974 FBXO40Q9UH90 709 aa15.62■□□□□ 0.09
LINC00540-202ENST00000616974 CDH23Q9H251 3354 aa15.61■□□□□ 0.09
LINC00540-202ENST00000616974 CNGA1P29973 690 aa15.61■□□□□ 0.09
LINC00540-202ENST00000616974 TKFCQ3LXA3 575 aa15.61■□□□□ 0.09
LINC00540-202ENST00000616974 GJC2Q5T442 439 aaPredicted RBP15.61■□□□□ 0.09
LINC00540-202ENST00000616974 OLFML2BQ68BL8 750 aa15.61■□□□□ 0.09
LINC00540-202ENST00000616974 FBXO16Q8IX29 292 aaPredicted RBP15.61■□□□□ 0.09
LINC00540-202ENST00000616974 DIS3LQ8TF46 1054 aaKnown RBP15.61■□□□□ 0.09
LINC00540-202ENST00000616974 NID2Q14112 1375 aa15.61■□□□□ 0.09
LINC00540-202ENST00000616974 C11orf97A0A1B0GVM6 126 aaPredicted RBP15.61■□□□□ 0.09
LINC00540-202ENST00000616974 ABCB11O95342 1321 aa15.61■□□□□ 0.09
LINC00540-202ENST00000616974 CTDNEP1O95476 244 aa15.61■□□□□ 0.09
LINC00540-202ENST00000616974 ZNF865P0CJ78 1059 aaPredicted RBP15.61■□□□□ 0.09
LINC00540-202ENST00000616974 COPB2P35606 906 aa15.61■□□□□ 0.09
LINC00540-202ENST00000616974 UBE2SQ16763 222 aa15.61■□□□□ 0.09
LINC00540-202ENST00000616974 LHX8Q68G74 356 aa15.61■□□□□ 0.09
LINC00540-202ENST00000616974 U2AF1L4Q8WU68 220 aaKnown RBP15.61■□□□□ 0.09
LINC00540-202ENST00000616974 RRP36Q96EU6 259 aaKnown RBP15.61■□□□□ 0.09
LINC00540-202ENST00000616974 RPTORQ8N122 1335 aa15.6■□□□□ 0.09
LINC00540-202ENST00000616974 HEATR3Q7Z4Q2 680 aa15.6■□□□□ 0.09
LINC00540-202ENST00000616974 PGBD1Q96JS3 809 aa15.6■□□□□ 0.09
LINC00540-202ENST00000616974 TBC1D32Q96NH3 1257 aa15.6■□□□□ 0.09
LINC00540-202ENST00000616974 CDKN2AIPQ9NXV6 580 aaPredicted RBP15.6■□□□□ 0.09
LINC00540-202ENST00000616974 PFASO15067 1338 aa15.59■□□□□ 0.09
LINC00540-202ENST00000616974 MEIS2O14770 477 aa15.59■□□□□ 0.09
LINC00540-202ENST00000616974 MNX1P50219 401 aaPredicted RBP15.59■□□□□ 0.09
LINC00540-202ENST00000616974 ALDH5A1P51649 535 aaPredicted RBP15.59■□□□□ 0.09
LINC00540-202ENST00000616974 FCHSD1Q86WN1 690 aa15.59■□□□□ 0.09
LINC00540-202ENST00000616974 HMX1Q9NP08 348 aaPredicted RBP15.59■□□□□ 0.09
LINC00540-202ENST00000616974 EIF2AK2P19525 551 aaKnown RBP15.59■□□□□ 0.09
LINC00540-202ENST00000616974 MFSD14CQ5VZR4 134 aa15.59■□□□□ 0.09
LINC00540-202ENST00000616974 MAMDC4Q6UXC1 1216 aa15.59■□□□□ 0.09
LINC00540-202ENST00000616974 SLC26A6Q9BXS9 759 aa15.59■□□□□ 0.09
LINC00540-202ENST00000616974 RBM28Q9NW13 759 aaKnown RBP15.59■□□□□ 0.09
LINC00540-202ENST00000616974 ZHX1Q9UKY1 873 aaPredicted RBP15.59■□□□□ 0.09
LINC00540-202ENST00000616974 GJB1P08034 283 aa15.58■□□□□ 0.08
LINC00540-202ENST00000616974 HSD17B4P51659 736 aa15.58■□□□□ 0.08
LINC00540-202ENST00000616974 IFFO2Q5TF58 517 aa15.58■□□□□ 0.08
LINC00540-202ENST00000616974 SEC63Q9UGP8 760 aaKnown RBP15.58■□□□□ 0.08
LINC00540-202ENST00000616974 DIS3Q9Y2L1 958 aaKnown RBP15.58■□□□□ 0.08
LINC00540-202ENST00000616974 STXBP3O00186 592 aa15.58■□□□□ 0.08
LINC00540-202ENST00000616974 ADCYAP1R1P41586 468 aa15.58■□□□□ 0.08
LINC00540-202ENST00000616974 GNAQP50148 359 aa15.58■□□□□ 0.08
LINC00540-202ENST00000616974 ZNF274Q96GC6 653 aaPredicted RBP15.58■□□□□ 0.08
LINC00540-202ENST00000616974 LZTS2Q9BRK4 669 aa15.58■□□□□ 0.08
LINC00540-202ENST00000616974 MRPL11Q9Y3B7 192 aaKnown RBP15.58■□□□□ 0.08
LINC00540-202ENST00000616974 MYADML2A6NDP7 307 aa15.57■□□□□ 0.08
LINC00540-202ENST00000616974 JAK2O60674 1132 aa15.57■□□□□ 0.08
LINC00540-202ENST00000616974 SGPL1O95470 568 aa15.57■□□□□ 0.08
LINC00540-202ENST00000616974 SMARCA1P28370 1054 aa15.57■□□□□ 0.08
LINC00540-202ENST00000616974 GJA8P48165 433 aa15.57■□□□□ 0.08
LINC00540-202ENST00000616974 CCDC144BQ3MJ40 725 aa15.57■□□□□ 0.08
LINC00540-202ENST00000616974 RMDN3Q96TC7 470 aa15.57■□□□□ 0.08
LINC00540-202ENST00000616974 TMEM106CQ9BVX2 250 aa15.57■□□□□ 0.08
LINC00540-202ENST00000616974 TMEM260Q9NX78 707 aa15.57■□□□□ 0.08
LINC00540-202ENST00000616974 RGS20O76081 388 aa15.56■□□□□ 0.08
LINC00540-202ENST00000616974 PGK1P00558 417 aa15.56■□□□□ 0.08
LINC00540-202ENST00000616974 RCAN1P53805 252 aa15.56■□□□□ 0.08
LINC00540-202ENST00000616974 ACVR2BQ13705 512 aa15.56■□□□□ 0.08
LINC00540-202ENST00000616974 TAPT1Q6NXT6 567 aa15.56■□□□□ 0.08
LINC00540-202ENST00000616974 ALDH8A1Q9H2A2 487 aaPredicted RBP15.56■□□□□ 0.08
LINC00540-202ENST00000616974 BCAS3Q9H6U6 928 aa15.56■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms