RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 NOM1Q5C9Z4 860 aaKnown RBP16.45■□□□□ 0.22
UPF1-211ENST00000600868 MCTP2Q6DN12 878 aa16.45■□□□□ 0.22
UPF1-211ENST00000600868 USP17L6PQ6QN14 398 aa16.45■□□□□ 0.22
UPF1-211ENST00000600868 RNF207Q6ZRF8 634 aa16.45■□□□□ 0.22
UPF1-211ENST00000600868 ABRAQ8N0Z2 381 aa16.45■□□□□ 0.22
UPF1-211ENST00000600868 REXO1Q8N1G1 1221 aaKnown RBP16.45■□□□□ 0.22
UPF1-211ENST00000600868 OXER1Q8TDS5 423 aa16.45■□□□□ 0.22
UPF1-211ENST00000600868 TBC1D5Q92609 795 aa16.45■□□□□ 0.22
UPF1-211ENST00000600868 BEGAINQ9BUH8 593 aa16.45■□□□□ 0.22
UPF1-211ENST00000600868 A1CFQ9NQ94 594 aaKnown RBP16.45■□□□□ 0.22
UPF1-211ENST00000600868 PFASO15067 1338 aa16.45■□□□□ 0.22
UPF1-211ENST00000600868 BTBD18B2RXH4 712 aa16.44■□□□□ 0.22
UPF1-211ENST00000600868 ADAMTS3O15072 1205 aa16.44■□□□□ 0.22
UPF1-211ENST00000600868 BRD1O95696 1058 aa16.44■□□□□ 0.22
UPF1-211ENST00000600868 FCER1AP12319 257 aa16.44■□□□□ 0.22
UPF1-211ENST00000600868 U2AF2P26368 475 aaKnown RBP eCLIP16.44■□□□□ 0.22
UPF1-211ENST00000600868 RPS6P62753 249 aaKnown RBP16.44■□□□□ 0.22
UPF1-211ENST00000600868 PKP1Q13835 747 aa16.44■□□□□ 0.22
UPF1-211ENST00000600868 BAATQ14032 418 aaPredicted RBP16.44■□□□□ 0.22
UPF1-211ENST00000600868 UBE2SQ16763 222 aa16.44■□□□□ 0.22
UPF1-211ENST00000600868 NSMFQ6X4W1 530 aa16.44■□□□□ 0.22
UPF1-211ENST00000600868 GPR142Q7Z601 462 aa16.44■□□□□ 0.22
UPF1-211ENST00000600868 ANKRD35Q8N283 1001 aa16.44■□□□□ 0.22
UPF1-211ENST00000600868 TNFRSF25Q93038 417 aa16.44■□□□□ 0.22
UPF1-211ENST00000600868 MMP19Q99542 508 aa16.44■□□□□ 0.22
UPF1-211ENST00000600868 WBP1LQ9NX94 342 aa16.44■□□□□ 0.22
UPF1-211ENST00000600868 CYP39A1Q9NYL5 469 aa16.44■□□□□ 0.22
UPF1-211ENST00000600868 BIN2Q9UBW5 565 aaPredicted RBP16.44■□□□□ 0.22
UPF1-211ENST00000600868 PCDHA6Q9UN73 950 aa16.44■□□□□ 0.22
UPF1-211ENST00000600868 PCDHA8Q9Y5H6 950 aa16.44■□□□□ 0.22
UPF1-211ENST00000600868 FOSP01100 380 aaPredicted RBP16.43■□□□□ 0.22
UPF1-211ENST00000600868 ZSCAN22P10073 491 aaPredicted RBP16.43■□□□□ 0.22
UPF1-211ENST00000600868 HOXA13P31271 388 aaPredicted RBP16.43■□□□□ 0.22
UPF1-211ENST00000600868 SP3Q02447 781 aa16.43■□□□□ 0.22
UPF1-211ENST00000600868 NR5A1Q13285 461 aa16.43■□□□□ 0.22
UPF1-211ENST00000600868 AP3B2Q13367 1082 aa16.43■□□□□ 0.22
UPF1-211ENST00000600868 KCTD2Q14681 263 aa16.43■□□□□ 0.22
UPF1-211ENST00000600868 WDR78Q5VTH9 848 aa16.43■□□□□ 0.22
UPF1-211ENST00000600868 MCTP1Q6DN14 999 aa16.43■□□□□ 0.22
UPF1-211ENST00000600868 PLEKHH3Q7Z736 793 aa16.43■□□□□ 0.22
UPF1-211ENST00000600868 SYTL5Q8TDW5 730 aaPredicted RBP16.43■□□□□ 0.22
UPF1-211ENST00000600868 IVNS1ABPQ9Y6Y0 642 aa16.43■□□□□ 0.22
UPF1-211ENST00000600868 SPDYE3A6NKU9 549 aa16.42■□□□□ 0.22
UPF1-211ENST00000600868 KIF28PB7ZC32 967 aa16.42■□□□□ 0.22
UPF1-211ENST00000600868 GPR25O00155 361 aa16.42■□□□□ 0.22
UPF1-211ENST00000600868 PTPREP23469 700 aa16.42■□□□□ 0.22
UPF1-211ENST00000600868 LACTBP83111 547 aaPredicted RBP16.42■□□□□ 0.22
UPF1-211ENST00000600868 GNL2Q13823 731 aaKnown RBP16.42■□□□□ 0.22
UPF1-211ENST00000600868 JAKMIP3Q5VZ66 844 aa16.42■□□□□ 0.22
UPF1-211ENST00000600868 SLC30A10Q6XR72 485 aa16.42■□□□□ 0.22
UPF1-211ENST00000600868 KRT25Q7Z3Z0 450 aa16.42■□□□□ 0.22
UPF1-211ENST00000600868 NOSTRINQ8IVI9 506 aa16.42■□□□□ 0.22
UPF1-211ENST00000600868 RASGRP4Q8TDF6 673 aa16.42■□□□□ 0.22
UPF1-211ENST00000600868 ZSCAN16Q9H4T2 348 aaPredicted RBP16.42■□□□□ 0.22
UPF1-211ENST00000600868 TMEM260Q9NX78 707 aa16.42■□□□□ 0.22
UPF1-211ENST00000600868 CHMP5Q9NZZ3 219 aa16.42■□□□□ 0.22
UPF1-211ENST00000600868 COL20A1Q9P218 1284 aa16.42■□□□□ 0.22
UPF1-211ENST00000600868 ZDHHC9Q9Y397 364 aa16.42■□□□□ 0.22
UPF1-211ENST00000600868 DNAJC25-GNG10A0A024R161 153 aa16.41■□□□□ 0.22
UPF1-211ENST00000600868 CCDC194A0A1B0GVG4 234 aa16.41■□□□□ 0.22
UPF1-211ENST00000600868 SLC15A5A6NIM6 579 aa16.41■□□□□ 0.22
UPF1-211ENST00000600868 RESTQ13127 1097 aa16.41■□□□□ 0.22
UPF1-211ENST00000600868 GRB14Q14449 540 aa16.41■□□□□ 0.22
UPF1-211ENST00000600868 BRAPQ7Z569 592 aa16.41■□□□□ 0.22
UPF1-211ENST00000600868 FCHSD1Q86WN1 690 aa16.41■□□□□ 0.22
UPF1-211ENST00000600868 JMYQ8N9B5 988 aa16.41■□□□□ 0.22
UPF1-211ENST00000600868 FAM133AQ8N9E0 248 aa16.41■□□□□ 0.22
UPF1-211ENST00000600868 ANO3Q9BYT9 981 aa16.41■□□□□ 0.22
UPF1-211ENST00000600868 PLXNB2O15031 1838 aa16.4■□□□□ 0.22
UPF1-211ENST00000600868 ZNF236Q9UL36 1845 aa16.4■□□□□ 0.22
UPF1-211ENST00000600868 MGAMO43451 1857 aa16.4■□□□□ 0.22
UPF1-211ENST00000600868 POTEB2H3BUK9 544 aa16.4■□□□□ 0.22
UPF1-211ENST00000600868 F13A1P00488 732 aa16.4■□□□□ 0.22
UPF1-211ENST00000600868 ADORA2AP29274 412 aa16.4■□□□□ 0.22
UPF1-211ENST00000600868 FCGRTP55899 365 aa16.4■□□□□ 0.22
UPF1-211ENST00000600868 KIF22Q14807 665 aa16.4■□□□□ 0.22
UPF1-211ENST00000600868 MORN1Q5T089 497 aa16.4■□□□□ 0.22
UPF1-211ENST00000600868 FERMT3Q86UX7 667 aa16.4■□□□□ 0.22
UPF1-211ENST00000600868 TAAR1Q96RJ0 339 aa16.4■□□□□ 0.22
UPF1-211ENST00000600868 EHMT1Q9H9B1 1298 aa16.4■□□□□ 0.22
UPF1-211ENST00000600868 ZNFX1Q9P2E3 1918 aaKnown RBP16.4■□□□□ 0.22
UPF1-211ENST00000600868 FRMPD4Q14CM0 1322 aa16.4■□□□□ 0.22
UPF1-211ENST00000600868 TNPO2O14787 897 aaKnown RBP16.39■□□□□ 0.21
UPF1-211ENST00000600868 FKTNO75072 461 aa16.39■□□□□ 0.21
UPF1-211ENST00000600868 CTGFP29279 349 aa16.39■□□□□ 0.21
UPF1-211ENST00000600868 SREBF1P36956 1147 aa16.39■□□□□ 0.21
UPF1-211ENST00000600868 PSMC4P43686 418 aa16.39■□□□□ 0.21
UPF1-211ENST00000600868 NONOQ15233 471 aaKnown RBP eCLIP16.39■□□□□ 0.21
UPF1-211ENST00000600868 EARS2Q5JPH6 523 aaKnown RBP16.39■□□□□ 0.21
UPF1-211ENST00000600868 PIK3AP1Q6ZUJ8 805 aa16.39■□□□□ 0.21
UPF1-211ENST00000600868 DNERQ8NFT8 737 aa16.39■□□□□ 0.21
UPF1-211ENST00000600868 SOCS4Q8WXH5 440 aa16.39■□□□□ 0.21
UPF1-211ENST00000600868 RMDN3Q96TC7 470 aa16.39■□□□□ 0.21
UPF1-211ENST00000600868 RPTORQ8N122 1335 aa16.39■□□□□ 0.21
UPF1-211ENST00000600868 LOC102724159A0A0B4J2E5 919 aa16.38■□□□□ 0.21
UPF1-211ENST00000600868 PGK2P07205 417 aa16.38■□□□□ 0.21
UPF1-211ENST00000600868 CNTN2Q02246 1040 aa16.38■□□□□ 0.21
UPF1-211ENST00000600868 PWP2Q15269 919 aaKnown RBP16.38■□□□□ 0.21
UPF1-211ENST00000600868 ZNF792Q3KQV3 632 aa16.38■□□□□ 0.21
UPF1-211ENST00000600868 FOXD4L5Q5VV16 416 aaPredicted RBP16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms