RNA–Protein interactions for RNA: ENST00000600840.1

TRIM28-214, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 338 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-214ENST00000600840 TMEM87BQ96K49 555 aa10.23□□□□□ -0.77
TRIM28-214ENST00000600840 TCEANC2Q96MN5 208 aa10.23□□□□□ -0.77
TRIM28-214ENST00000600840 PURBQ96QR8 312 aaKnown RBP10.23□□□□□ -0.77
TRIM28-214ENST00000600840 TMEM47Q9BQJ4 181 aa10.23□□□□□ -0.77
TRIM28-214ENST00000600840 ZKSCAN3Q9BRR0 538 aa10.23□□□□□ -0.77
TRIM28-214ENST00000600840 PBX4Q9BYU1 374 aa10.23□□□□□ -0.77
TRIM28-214ENST00000600840 UPF3BQ9BZI7 483 aaKnown RBP10.23□□□□□ -0.77
TRIM28-214ENST00000600840 LY9Q9HBG7 655 aa10.23□□□□□ -0.77
TRIM28-214ENST00000600840 HOMER2Q9NSB8 354 aa10.23□□□□□ -0.77
TRIM28-214ENST00000600840 SYNPO2Q9UMS6 1093 aa10.23□□□□□ -0.77
TRIM28-214ENST00000600840 PHF24Q9UPV7 400 aa10.23□□□□□ -0.77
TRIM28-214ENST00000600840 MTMR7Q9Y216 660 aa10.23□□□□□ -0.77
TRIM28-214ENST00000600840 ASTN1O14525 1302 aa10.23□□□□□ -0.77
TRIM28-214ENST00000600840 SYNGAP1Q96PV0 1343 aa10.23□□□□□ -0.77
TRIM28-214ENST00000600840 MYO9BQ13459 2157 aa10.22□□□□□ -0.77
TRIM28-214ENST00000600840 SOWAHBA6NEL2 793 aa10.22□□□□□ -0.77
TRIM28-214ENST00000600840 KIAA0355O15063 1070 aa10.22□□□□□ -0.77
TRIM28-214ENST00000600840 PQBP1O60828 265 aaKnown RBP10.22□□□□□ -0.77
TRIM28-214ENST00000600840 SNHG28P0DPA3 235 aa10.22□□□□□ -0.77
TRIM28-214ENST00000600840 RARBP10826 455 aa10.22□□□□□ -0.77
TRIM28-214ENST00000600840 CASTP20810 708 aaKnown RBP10.22□□□□□ -0.77
TRIM28-214ENST00000600840 IGFBP4P22692 258 aa10.22□□□□□ -0.77
TRIM28-214ENST00000600840 COPB2P35606 906 aa10.22□□□□□ -0.77
TRIM28-214ENST00000600840 TFF2Q03403 129 aa10.22□□□□□ -0.77
TRIM28-214ENST00000600840 TRDNQ13061 729 aa10.22□□□□□ -0.77
TRIM28-214ENST00000600840 MUM1L1Q5H9M0 696 aa10.22□□□□□ -0.77
TRIM28-214ENST00000600840 TMEM63BQ5T3F8 832 aa10.22□□□□□ -0.77
TRIM28-214ENST00000600840 CCSAPQ6IQ19 270 aaPredicted RBP10.22□□□□□ -0.77
TRIM28-214ENST00000600840 BLOC1S2Q6QNY1 142 aa10.22□□□□□ -0.77
TRIM28-214ENST00000600840 RALYLQ86SE5 291 aaKnown RBP10.22□□□□□ -0.77
TRIM28-214ENST00000600840 SGMS1Q86VZ5 419 aa10.22□□□□□ -0.77
TRIM28-214ENST00000600840 IL27Q8NEV9 243 aa10.22□□□□□ -0.77
TRIM28-214ENST00000600840 GMCL1Q96IK5 515 aa10.22□□□□□ -0.77
TRIM28-214ENST00000600840 BUD13Q9BRD0 619 aaKnown RBP eCLIP10.22□□□□□ -0.779e-16■□□□□ 9.2
TRIM28-214ENST00000600840 LRFN3Q9BTN0 628 aa10.22□□□□□ -0.77
TRIM28-214ENST00000600840 LRRC2Q9BYS8 371 aa10.22□□□□□ -0.77
TRIM28-214ENST00000600840 KATNBL1Q9H079 304 aa10.22□□□□□ -0.77
TRIM28-214ENST00000600840 EPHX3Q9H6B9 360 aa10.22□□□□□ -0.77
TRIM28-214ENST00000600840 TOMM22Q9NS69 142 aa10.22□□□□□ -0.77
TRIM28-214ENST00000600840 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.22□□□□□ -0.77
TRIM28-214ENST00000600840 NRBP1Q9UHY1 535 aa10.22□□□□□ -0.77
TRIM28-214ENST00000600840 BRPF3Q9ULD4 1205 aa10.22□□□□□ -0.77
TRIM28-214ENST00000600840 STX8Q9UNK0 236 aa10.22□□□□□ -0.77
TRIM28-214ENST00000600840 TNKSO95271 1327 aa10.22□□□□□ -0.77
TRIM28-214ENST00000600840 SYNRGQ9UMZ2 1314 aa10.22□□□□□ -0.77
TRIM28-214ENST00000600840 C11orf97A0A1B0GVM6 126 aaPredicted RBP10.21□□□□□ -0.77
TRIM28-214ENST00000600840 A0A1W2PQ45 241 aaPredicted RBP10.21□□□□□ -0.77
TRIM28-214ENST00000600840 A0A1W2PQY0 241 aa10.21□□□□□ -0.77
TRIM28-214ENST00000600840 IFIT3O14879 490 aaKnown RBP10.21□□□□□ -0.77
TRIM28-214ENST00000600840 CTAGE5O15320 804 aa10.21□□□□□ -0.77
TRIM28-214ENST00000600840 AKR1A1P14550 325 aa10.21□□□□□ -0.77
TRIM28-214ENST00000600840 SLC16A2P36021 539 aa10.21□□□□□ -0.77
TRIM28-214ENST00000600840 SLC1A4P43007 532 aa10.21□□□□□ -0.77
TRIM28-214ENST00000600840 KCNQ1P51787 676 aa10.21□□□□□ -0.77
TRIM28-214ENST00000600840 STAT2P52630 851 aa10.21□□□□□ -0.77
TRIM28-214ENST00000600840 TROAPQ12815 778 aa10.21□□□□□ -0.77
TRIM28-214ENST00000600840 ACVR2BQ13705 512 aa10.21□□□□□ -0.77
TRIM28-214ENST00000600840 CCDC178Q5BJE1 867 aa10.21□□□□□ -0.77
TRIM28-214ENST00000600840 C1orf53Q5VUE5 145 aa10.21□□□□□ -0.77
TRIM28-214ENST00000600840 CCDC174Q6PII3 467 aa10.21□□□□□ -0.77
TRIM28-214ENST00000600840 ARMCX2Q7L311 632 aa10.21□□□□□ -0.77
TRIM28-214ENST00000600840 IQCA1Q86XH1 822 aa10.21□□□□□ -0.77
TRIM28-214ENST00000600840 ANKRD35Q8N283 1001 aa10.21□□□□□ -0.77
TRIM28-214ENST00000600840 FAM133AQ8N9E0 248 aa10.21□□□□□ -0.77
TRIM28-214ENST00000600840 KLHDC9Q8NEP7 349 aa10.21□□□□□ -0.77
TRIM28-214ENST00000600840 CHST13Q8NET6 341 aa10.21□□□□□ -0.77
TRIM28-214ENST00000600840 C1QTNF1Q9BXJ1 281 aa10.21□□□□□ -0.77
TRIM28-214ENST00000600840 A1CFQ9NQ94 594 aaKnown RBP10.21□□□□□ -0.77
TRIM28-214ENST00000600840 ZHX1Q9UKY1 873 aaPredicted RBP10.21□□□□□ -0.77
TRIM28-214ENST00000600840 PRR12Q9ULL5 1215 aa10.21□□□□□ -0.77
TRIM28-214ENST00000600840 ISY1Q9ULR0 285 aaKnown RBP10.21□□□□□ -0.77
TRIM28-214ENST00000600840 CTDP1Q9Y5B0 961 aaPredicted RBP10.21□□□□□ -0.77
TRIM28-214ENST00000600840 CYP46A1Q9Y6A2 500 aa10.21□□□□□ -0.77
TRIM28-214ENST00000600840 LRRC37A2A6NM11 1700 aa10.21□□□□□ -0.78
TRIM28-214ENST00000600840 CD2BP2O95400 341 aaKnown RBP10.2□□□□□ -0.78
TRIM28-214ENST00000600840 TOP1P11387 765 aaKnown RBP10.2□□□□□ -0.78
TRIM28-214ENST00000600840 ALAS1P13196 640 aa10.2□□□□□ -0.78
TRIM28-214ENST00000600840 BMP1P13497 986 aa10.2□□□□□ -0.78
TRIM28-214ENST00000600840 OAZ1P54368 228 aa10.2□□□□□ -0.78
TRIM28-214ENST00000600840 KCNA10Q16322 511 aa10.2□□□□□ -0.78
TRIM28-214ENST00000600840 CCDC144BQ3MJ40 725 aa10.2□□□□□ -0.78
TRIM28-214ENST00000600840 FRMPD2Q68DX3 1309 aaPredicted RBP10.2□□□□□ -0.78
TRIM28-214ENST00000600840 Q6ZUG5 572 aa10.2□□□□□ -0.78
TRIM28-214ENST00000600840 C16orf59Q7L2K0 433 aa10.2□□□□□ -0.78
TRIM28-214ENST00000600840 ZNF467Q7Z7K2 595 aaPredicted RBP10.2□□□□□ -0.78
TRIM28-214ENST00000600840 ALYREFQ86V81 257 aaKnown RBP10.2□□□□□ -0.78
TRIM28-214ENST00000600840 CCDC144CPQ8IYA2 1237 aa10.2□□□□□ -0.78
TRIM28-214ENST00000600840 MICALL1Q8N3F8 863 aa10.2□□□□□ -0.78
TRIM28-214ENST00000600840 MSL3Q8N5Y2 521 aaKnown RBP10.2□□□□□ -0.78
TRIM28-214ENST00000600840 CHURC1Q8WUH1 139 aa10.2□□□□□ -0.78
TRIM28-214ENST00000600840 RNF146Q9NTX7 359 aa10.2□□□□□ -0.78
TRIM28-214ENST00000600840 FAM217BQ9NTX9 383 aaPredicted RBP10.2□□□□□ -0.78
TRIM28-214ENST00000600840 TMEM39AQ9NV64 488 aa10.2□□□□□ -0.78
TRIM28-214ENST00000600840 FAM184BQ9ULE4 1060 aa10.2□□□□□ -0.78
TRIM28-214ENST00000600840 CNPY2Q9Y2B0 182 aa10.2□□□□□ -0.78
TRIM28-214ENST00000600840 HCN4Q9Y3Q4 1203 aa10.2□□□□□ -0.78
TRIM28-214ENST00000600840 PLA2G6O60733 806 aa10.19□□□□□ -0.78
TRIM28-214ENST00000600840 DUSP11O75319 330 aaKnown RBP10.19□□□□□ -0.78
TRIM28-214ENST00000600840 NEK4P51957 841 aa10.19□□□□□ -0.78
TRIM28-214ENST00000600840 ACLYP53396 1101 aa10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms