RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 SUPT16HQ9Y5B9 1047 aaKnown RBP11.48□□□□□ -0.57
VRK3-216ENST00000599342 B4DLN1 442 aa11.47□□□□□ -0.57
VRK3-216ENST00000599342 GOLGA8HP0CJ92 632 aa11.47□□□□□ -0.57
VRK3-216ENST00000599342 MRPL12P52815 198 aaKnown RBP11.47□□□□□ -0.57
VRK3-216ENST00000599342 RPS6P62753 249 aaKnown RBP11.47□□□□□ -0.57
VRK3-216ENST00000599342 PDE4DQ08499 809 aa11.47□□□□□ -0.57
VRK3-216ENST00000599342 PPIGQ13427 754 aaKnown RBP eCLIP11.47□□□□□ -0.572e-6■■□□□ 11.6
VRK3-216ENST00000599342 USH1GQ495M9 461 aa11.47□□□□□ -0.57
VRK3-216ENST00000599342 ASPRV1Q53RT3 343 aa11.47□□□□□ -0.57
VRK3-216ENST00000599342 MFSD5Q6N075 450 aa11.47□□□□□ -0.57
VRK3-216ENST00000599342 TAPT1Q6NXT6 567 aa11.47□□□□□ -0.57
VRK3-216ENST00000599342 TMEM199Q8N511 208 aa11.47□□□□□ -0.57
VRK3-216ENST00000599342 DNERQ8NFT8 737 aa11.47□□□□□ -0.57
VRK3-216ENST00000599342 CLEC4DQ8WXI8 215 aa11.47□□□□□ -0.57
VRK3-216ENST00000599342 ZSCAN10Q96SZ4 725 aaPredicted RBP11.47□□□□□ -0.57
VRK3-216ENST00000599342 SEZ6LQ9BYH1 1024 aa11.47□□□□□ -0.57
VRK3-216ENST00000599342 PPP1R12CQ9BZL4 782 aa11.47□□□□□ -0.57
VRK3-216ENST00000599342 TNKSO95271 1327 aa11.46□□□□□ -0.57
VRK3-216ENST00000599342 RAD50Q92878 1312 aa11.46□□□□□ -0.57
VRK3-216ENST00000599342 DHX16O60231 1041 aaKnown RBP11.46□□□□□ -0.57
VRK3-216ENST00000599342 PARP1P09874 1014 aaKnown RBP11.46□□□□□ -0.57
VRK3-216ENST00000599342 PTGS1P23219 599 aa11.46□□□□□ -0.57
VRK3-216ENST00000599342 EPHB4P54760 987 aa11.46□□□□□ -0.57
VRK3-216ENST00000599342 ITGA7Q13683 1181 aa11.46□□□□□ -0.57
VRK3-216ENST00000599342 CDC37Q16543 378 aaPredicted RBP11.46□□□□□ -0.57
VRK3-216ENST00000599342 DUSP28Q4G0W2 176 aa11.46□□□□□ -0.57
VRK3-216ENST00000599342 BRDTQ58F21 947 aaPredicted RBP11.46□□□□□ -0.57
VRK3-216ENST00000599342 ENAHQ8N8S7 591 aaPredicted RBP11.46□□□□□ -0.57
VRK3-216ENST00000599342 RUFY2Q8WXA3 655 aa11.46□□□□□ -0.57
VRK3-216ENST00000599342 GUCD1Q96NT3 240 aa11.46□□□□□ -0.57
VRK3-216ENST00000599342 WDR11Q9BZH6 1224 aa11.46□□□□□ -0.57
VRK3-216ENST00000599342 UBA5Q9GZZ9 404 aa11.46□□□□□ -0.57
VRK3-216ENST00000599342 ZSWIM5Q9P217 1185 aa11.46□□□□□ -0.57
VRK3-216ENST00000599342 LCTP09848 1927 aa11.45□□□□□ -0.58
VRK3-216ENST00000599342 ABCB11O95342 1321 aa11.45□□□□□ -0.58
VRK3-216ENST00000599342 CD4P01730 458 aa11.45□□□□□ -0.58
VRK3-216ENST00000599342 CPT1AP50416 773 aa11.45□□□□□ -0.58
VRK3-216ENST00000599342 TRDNQ13061 729 aa11.45□□□□□ -0.58
VRK3-216ENST00000599342 PPP2R5BQ15173 497 aa11.45□□□□□ -0.58
VRK3-216ENST00000599342 IFIT1BQ5T764 474 aaKnown RBP11.45□□□□□ -0.58
VRK3-216ENST00000599342 TTC22Q5TAA0 569 aa11.45□□□□□ -0.58
VRK3-216ENST00000599342 PSRC1Q6PGN9 363 aaPredicted RBP11.45□□□□□ -0.58
VRK3-216ENST00000599342 OR6J1Q8NGC5 347 aa11.45□□□□□ -0.58
VRK3-216ENST00000599342 ANKS1AQ92625 1134 aa11.45□□□□□ -0.58
VRK3-216ENST00000599342 CPVLQ9H3G5 476 aa11.45□□□□□ -0.58
VRK3-216ENST00000599342 GPHNQ9NQX3 736 aaPredicted RBP11.45□□□□□ -0.58
VRK3-216ENST00000599342 POLR3EQ9NVU0 708 aa11.45□□□□□ -0.58
VRK3-216ENST00000599342 TMEM265A0A087WTH1 108 aa11.44□□□□□ -0.58
VRK3-216ENST00000599342 HSFX4A0A1B0GTS1 333 aaPredicted RBP11.44□□□□□ -0.58
VRK3-216ENST00000599342 HSFX3A0A1B0GWH4 333 aaPredicted RBP11.44□□□□□ -0.58
VRK3-216ENST00000599342 NKRFO15226 690 aaKnown RBP eCLIP11.44□□□□□ -0.58
VRK3-216ENST00000599342 B4GALT4O60513 344 aa11.44□□□□□ -0.58
VRK3-216ENST00000599342 GSPT1P15170 499 aaKnown RBP11.44□□□□□ -0.58
VRK3-216ENST00000599342 CSF2RAP15509 400 aa11.44□□□□□ -0.58
VRK3-216ENST00000599342 PDE4AP27815 886 aa11.44□□□□□ -0.58
VRK3-216ENST00000599342 PSMC6P62333 389 aa11.44□□□□□ -0.58
VRK3-216ENST00000599342 TMEM63BQ5T3F8 832 aa11.44□□□□□ -0.58
VRK3-216ENST00000599342 MCF2L2Q86YR7 1114 aa11.44□□□□□ -0.58
VRK3-216ENST00000599342 ADGRF4Q8IZF3 695 aa11.44□□□□□ -0.58
VRK3-216ENST00000599342 SLC43A3Q8NBI5 491 aa11.44□□□□□ -0.58
VRK3-216ENST00000599342 RGS22Q8NE09 1264 aa11.44□□□□□ -0.58
VRK3-216ENST00000599342 SCFD2Q8WU76 684 aa11.44□□□□□ -0.58
VRK3-216ENST00000599342 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.44□□□□□ -0.588e-11■■■■□ 20.6
VRK3-216ENST00000599342 MAF1Q9H063 256 aa11.44□□□□□ -0.58
VRK3-216ENST00000599342 MTIF3Q9H2K0 278 aaKnown RBP11.44□□□□□ -0.58
VRK3-216ENST00000599342 SEMA6BQ9H3T3 888 aa11.44□□□□□ -0.58
VRK3-216ENST00000599342 HIPK3Q9H422 1215 aa11.44□□□□□ -0.58
VRK3-216ENST00000599342 COL6A3P12111 3177 aa11.44□□□□□ -0.58
VRK3-216ENST00000599342 RBM47A0AV96 593 aaKnown RBP11.43□□□□□ -0.58
VRK3-216ENST00000599342 DLL1O00548 723 aa11.43□□□□□ -0.58
VRK3-216ENST00000599342 MYL3P08590 195 aa11.43□□□□□ -0.58
VRK3-216ENST00000599342 ACRP10323 421 aa11.43□□□□□ -0.58
VRK3-216ENST00000599342 EDNRBP24530 442 aa11.43□□□□□ -0.58
VRK3-216ENST00000599342 CYP2C18P33260 490 aa11.43□□□□□ -0.58
VRK3-216ENST00000599342 TTLL4Q14679 1199 aa11.43□□□□□ -0.58
VRK3-216ENST00000599342 QRICH1Q2TAL8 776 aa11.43□□□□□ -0.58
VRK3-216ENST00000599342 TMEM240Q5SV17 173 aa11.43□□□□□ -0.58
VRK3-216ENST00000599342 FBXO11Q86XK2 927 aa11.43□□□□□ -0.58
VRK3-216ENST00000599342 CDX2Q99626 313 aaPredicted RBP11.43□□□□□ -0.58
VRK3-216ENST00000599342 IL25Q9H293 177 aa11.43□□□□□ -0.58
VRK3-216ENST00000599342 VAT1LQ9HCJ6 419 aa11.43□□□□□ -0.58
VRK3-216ENST00000599342 MRPL11Q9Y3B7 192 aaKnown RBP11.43□□□□□ -0.58
VRK3-216ENST00000599342 U3KPZ7 1027 aaPredicted RBP11.43□□□□□ -0.58
VRK3-216ENST00000599342 GRIN2DO15399 1336 aa11.42□□□□□ -0.58
VRK3-216ENST00000599342 ERICH2A1L162 156 aa11.42□□□□□ -0.58
VRK3-216ENST00000599342 KPNA6O60684 536 aa11.42□□□□□ -0.58
VRK3-216ENST00000599342 SUPT20HL2P0C7V6 817 aa11.42□□□□□ -0.58
VRK3-216ENST00000599342 TXNP10599 105 aaKnown RBP11.42□□□□□ -0.58
VRK3-216ENST00000599342 DNAJB2P25686 324 aa11.42□□□□□ -0.58
VRK3-216ENST00000599342 IRX6P78412 446 aaPredicted RBP11.42□□□□□ -0.58
VRK3-216ENST00000599342 PURAQ00577 322 aaKnown RBP11.42□□□□□ -0.58
VRK3-216ENST00000599342 FAM47CQ5HY64 1035 aa11.42□□□□□ -0.58
VRK3-216ENST00000599342 ZNF365Q70YC5 407 aa11.42□□□□□ -0.58
VRK3-216ENST00000599342 RALYLQ86SE5 291 aaKnown RBP11.42□□□□□ -0.58
VRK3-216ENST00000599342 NSUN6Q8TEA1 469 aaKnown RBP11.42□□□□□ -0.58
VRK3-216ENST00000599342 MTG1Q9BT17 334 aaPredicted RBP11.42□□□□□ -0.58
VRK3-216ENST00000599342 TRPV6Q9H1D0 765 aa11.42□□□□□ -0.58
VRK3-216ENST00000599342 ALDH8A1Q9H2A2 487 aaPredicted RBP11.42□□□□□ -0.58
VRK3-216ENST00000599342 TTYH1Q9H313 450 aaPredicted RBP11.42□□□□□ -0.58
VRK3-216ENST00000599342 IL23AQ9NPF7 189 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms