RNA–Protein interactions for RNA: ENST00000594862.1

SHKBP1-204, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 623 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-204ENST00000594862 ZMYND8Q9ULU4 1186 aaPredicted RBP20.63■□□□□ 0.89
SHKBP1-204ENST00000594862 ASTN1O14525 1302 aa20.62■□□□□ 0.89
SHKBP1-204ENST00000594862 C6orf222P0C671 652 aaPredicted RBP20.62■□□□□ 0.89
SHKBP1-204ENST00000594862 ANTXR2P58335 489 aa20.62■□□□□ 0.89
SHKBP1-204ENST00000594862 PDE4DQ08499 809 aa20.62■□□□□ 0.89
SHKBP1-204ENST00000594862 KLHDC9Q8NEP7 349 aa20.62■□□□□ 0.89
SHKBP1-204ENST00000594862 CTCFLQ8NI51 663 aaPredicted RBP20.62■□□□□ 0.89
SHKBP1-204ENST00000594862 LENG1Q96BZ8 264 aaPredicted RBP20.62■□□□□ 0.89
SHKBP1-204ENST00000594862 MTMR8Q96EF0 704 aa20.62■□□□□ 0.89
SHKBP1-204ENST00000594862 MAP3K20Q9NYL2 800 aaKnown RBP20.62■□□□□ 0.89
SHKBP1-204ENST00000594862 Q9Y3F1 56 aa20.62■□□□□ 0.89
SHKBP1-204ENST00000594862 A0A1W2PQ45 241 aaPredicted RBP20.61■□□□□ 0.89
SHKBP1-204ENST00000594862 A0A1W2PQY0 241 aa20.61■□□□□ 0.89
SHKBP1-204ENST00000594862 CALM1P0DP23 149 aa20.61■□□□□ 0.89
SHKBP1-204ENST00000594862 CALM2P0DP24 149 aa20.61■□□□□ 0.89
SHKBP1-204ENST00000594862 CALM3P0DP25 149 aa20.61■□□□□ 0.89
SHKBP1-204ENST00000594862 BMP8BP34820 402 aa20.61■□□□□ 0.89
SHKBP1-204ENST00000594862 LIFRP42702 1097 aa20.61■□□□□ 0.89
SHKBP1-204ENST00000594862 ACLYP53396 1101 aa20.61■□□□□ 0.89
SHKBP1-204ENST00000594862 KRT32Q14532 448 aa20.61■□□□□ 0.89
SHKBP1-204ENST00000594862 NOL8Q76FK4 1167 aaKnown RBP20.61■□□□□ 0.89
SHKBP1-204ENST00000594862 CHST3Q7LGC8 479 aa20.61■□□□□ 0.89
SHKBP1-204ENST00000594862 SKAP1Q86WV1 359 aa20.61■□□□□ 0.89
SHKBP1-204ENST00000594862 STAG2Q8N3U4 1231 aa20.61■□□□□ 0.89
SHKBP1-204ENST00000594862 GLT1D1Q96MS3 346 aa20.61■□□□□ 0.89
SHKBP1-204ENST00000594862 LZTS2Q9BRK4 669 aa20.61■□□□□ 0.89
SHKBP1-204ENST00000594862 AP5M1Q9H0R1 490 aa20.61■□□□□ 0.89
SHKBP1-204ENST00000594862 LY9Q9HBG7 655 aa20.61■□□□□ 0.89
SHKBP1-204ENST00000594862 VAT1LQ9HCJ6 419 aa20.61■□□□□ 0.89
SHKBP1-204ENST00000594862 ATP11BQ9Y2G3 1177 aa20.61■□□□□ 0.89
SHKBP1-204ENST00000594862 COL6A3P12111 3177 aa20.6■□□□□ 0.89
SHKBP1-204ENST00000594862 CCDC69A6NI79 296 aa20.6■□□□□ 0.89
SHKBP1-204ENST00000594862 GNAQP50148 359 aa20.6■□□□□ 0.89
SHKBP1-204ENST00000594862 NFXL1Q6ZNB6 911 aa20.6■□□□□ 0.89
SHKBP1-204ENST00000594862 TLK2Q86UE8 772 aa20.6■□□□□ 0.89
SHKBP1-204ENST00000594862 FBXO16Q8IX29 292 aaPredicted RBP20.6■□□□□ 0.89
SHKBP1-204ENST00000594862 ZNF654Q8IZM8 581 aa20.6■□□□□ 0.89
SHKBP1-204ENST00000594862 FERMT2Q96AC1 680 aa20.6■□□□□ 0.89
SHKBP1-204ENST00000594862 GDF15Q99988 308 aa20.6■□□□□ 0.89
SHKBP1-204ENST00000594862 RIOX1Q9H6W3 641 aa20.6■□□□□ 0.89
SHKBP1-204ENST00000594862 STARD7Q9NQZ5 370 aa20.6■□□□□ 0.89
SHKBP1-204ENST00000594862 ELP1O95163 1332 aa20.59■□□□□ 0.89
SHKBP1-204ENST00000594862 MROH7Q68CQ1 1323 aa20.59■□□□□ 0.89
SHKBP1-204ENST00000594862 SH2B2O14492 632 aaPredicted RBP20.59■□□□□ 0.89
SHKBP1-204ENST00000594862 ZEB2O60315 1214 aa20.59■□□□□ 0.89
SHKBP1-204ENST00000594862 EDNRBP24530 442 aa20.59■□□□□ 0.89
SHKBP1-204ENST00000594862 SMARCA1P28370 1054 aa20.59■□□□□ 0.89
SHKBP1-204ENST00000594862 GHRHRQ02643 423 aa20.59■□□□□ 0.89
SHKBP1-204ENST00000594862 GNASQ5JWF2 1037 aa20.59■□□□□ 0.89
SHKBP1-204ENST00000594862 CCSAPQ6IQ19 270 aaPredicted RBP20.59■□□□□ 0.89
SHKBP1-204ENST00000594862 NSUN6Q8TEA1 469 aaKnown RBP20.59■□□□□ 0.89
SHKBP1-204ENST00000594862 LBHD1Q9BQE6 289 aaPredicted RBP20.59■□□□□ 0.89
SHKBP1-204ENST00000594862 GNEQ9Y223 722 aaKnown RBP20.59■□□□□ 0.89
SHKBP1-204ENST00000594862 NKRFO15226 690 aaKnown RBP eCLIP20.58■□□□□ 0.89
SHKBP1-204ENST00000594862 ADCY6O43306 1168 aa20.58■□□□□ 0.89
SHKBP1-204ENST00000594862 CABYRO75952 493 aa20.58■□□□□ 0.89
SHKBP1-204ENST00000594862 HMGB1P09429 215 aaKnown RBP20.58■□□□□ 0.89
SHKBP1-204ENST00000594862 SYN1P17600 705 aa20.58■□□□□ 0.89
SHKBP1-204ENST00000594862 KCNA10Q16322 511 aa20.58■□□□□ 0.89
SHKBP1-204ENST00000594862 TSGA10IPQ3SY00 556 aa20.58■□□□□ 0.89
SHKBP1-204ENST00000594862 TRIM60Q495X7 471 aa20.58■□□□□ 0.89
SHKBP1-204ENST00000594862 TAPT1Q6NXT6 567 aa20.58■□□□□ 0.89
SHKBP1-204ENST00000594862 SCFD2Q8WU76 684 aa20.58■□□□□ 0.89
SHKBP1-204ENST00000594862 IWS1Q96ST2 819 aa20.58■□□□□ 0.89
SHKBP1-204ENST00000594862 SPZ1Q9BXG8 430 aa20.58■□□□□ 0.89
SHKBP1-204ENST00000594862 SEZ6LQ9BYH1 1024 aa20.58■□□□□ 0.89
SHKBP1-204ENST00000594862 PCDHA1Q9Y5I3 950 aa20.58■□□□□ 0.89
SHKBP1-204ENST00000594862 PNMA6FA0A0J9YX94 578 aa20.57■□□□□ 0.88
SHKBP1-204ENST00000594862 RBM47A0AV96 593 aaKnown RBP20.57■□□□□ 0.88
SHKBP1-204ENST00000594862 REC8O95072 547 aa20.57■□□□□ 0.88
SHKBP1-204ENST00000594862 MAGEA10P43363 369 aaPredicted RBP20.57■□□□□ 0.88
SHKBP1-204ENST00000594862 DUSP28Q4G0W2 176 aa20.57■□□□□ 0.88
SHKBP1-204ENST00000594862 EEPD1Q7L9B9 569 aa20.57■□□□□ 0.88
SHKBP1-204ENST00000594862 HOMER1Q86YM7 354 aa20.57■□□□□ 0.88
SHKBP1-204ENST00000594862 SYTL5Q8TDW5 730 aaPredicted RBP20.57■□□□□ 0.88
SHKBP1-204ENST00000594862 NEK1Q96PY6 1258 aa20.57■□□□□ 0.88
SHKBP1-204ENST00000594862 PURBQ96QR8 312 aaKnown RBP20.57■□□□□ 0.88
SHKBP1-204ENST00000594862 SENP2Q9HC62 589 aa20.57■□□□□ 0.88
SHKBP1-204ENST00000594862 PPP4R2Q9NY27 417 aa20.57■□□□□ 0.88
SHKBP1-204ENST00000594862 SLC12A7Q9Y666 1083 aa20.57■□□□□ 0.88
SHKBP1-204ENST00000594862 C11orf97A0A1B0GVM6 126 aaPredicted RBP20.56■□□□□ 0.88
SHKBP1-204ENST00000594862 ASGR1P07306 291 aa20.56■□□□□ 0.88
SHKBP1-204ENST00000594862 SMPD1P17405 629 aa20.56■□□□□ 0.88
SHKBP1-204ENST00000594862 HSD17B4P51659 736 aa20.56■□□□□ 0.88
SHKBP1-204ENST00000594862 PPP2R5BQ15173 497 aa20.56■□□□□ 0.88
SHKBP1-204ENST00000594862 FSCN1Q16658 493 aaKnown RBP20.56■□□□□ 0.88
SHKBP1-204ENST00000594862 BRDTQ58F21 947 aaPredicted RBP20.56■□□□□ 0.88
SHKBP1-204ENST00000594862 SYNE3Q6ZMZ3 975 aa20.56■□□□□ 0.88
SHKBP1-204ENST00000594862 SGMS1Q86VZ5 419 aa20.56■□□□□ 0.88
SHKBP1-204ENST00000594862 RRP36Q96EU6 259 aaKnown RBP20.56■□□□□ 0.88
SHKBP1-204ENST00000594862 TOX2Q96NM4 488 aa20.56■□□□□ 0.88
SHKBP1-204ENST00000594862 PIGSQ96S52 555 aa20.56■□□□□ 0.88
SHKBP1-204ENST00000594862 SEC63Q9UGP8 760 aaKnown RBP20.56■□□□□ 0.88
SHKBP1-204ENST00000594862 A0A0U1RQG5 324 aaPredicted RBP20.55■□□□□ 0.88
SHKBP1-204ENST00000594862 MYADML2A6NDP7 307 aa20.55■□□□□ 0.88
SHKBP1-204ENST00000594862 CFBP00751 764 aa20.55■□□□□ 0.88
SHKBP1-204ENST00000594862 CPT1AP50416 773 aa20.55■□□□□ 0.88
SHKBP1-204ENST00000594862 ANKRD33Q7Z3H0 272 aa20.55■□□□□ 0.88
SHKBP1-204ENST00000594862 RMDN3Q96TC7 470 aa20.55■□□□□ 0.88
SHKBP1-204ENST00000594862 WDR11Q9BZH6 1224 aa20.55■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms