RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 DNERQ8NFT8 737 aa17.4■□□□□ 0.38
UPF1-202ENST00000594243 SHISA4Q96DD7 197 aa17.4■□□□□ 0.38
UPF1-202ENST00000594243 FGD4Q96M96 766 aa17.4■□□□□ 0.38
UPF1-202ENST00000594243 ABHD16BQ9H3Z7 469 aa17.4■□□□□ 0.38
UPF1-202ENST00000594243 CDKN2AIPQ9NXV6 580 aaPredicted RBP17.4■□□□□ 0.38
UPF1-202ENST00000594243 OGDHLQ9ULD0 1010 aa17.4■□□□□ 0.38
UPF1-202ENST00000594243 PLXNA1Q9UIW2 1896 aa17.39■□□□□ 0.38
UPF1-202ENST00000594243 PPP1R11O60927 126 aaPredicted RBP17.39■□□□□ 0.37
UPF1-202ENST00000594243 ZNF865P0CJ78 1059 aaPredicted RBP17.39■□□□□ 0.37
UPF1-202ENST00000594243 METAP2P50579 478 aaKnown RBP eCLIP17.39■□□□□ 0.37
UPF1-202ENST00000594243 ACVR2BQ13705 512 aa17.39■□□□□ 0.37
UPF1-202ENST00000594243 C8orf34Q49A92 452 aa17.39■□□□□ 0.37
UPF1-202ENST00000594243 SLC30A10Q6XR72 485 aa17.39■□□□□ 0.37
UPF1-202ENST00000594243 CMTR1Q8N1G2 835 aaKnown RBP17.39■□□□□ 0.37
UPF1-202ENST00000594243 CCDC82Q8N4S0 544 aa17.39■□□□□ 0.37
UPF1-202ENST00000594243 PIBF1Q8WXW3 757 aa17.39■□□□□ 0.37
UPF1-202ENST00000594243 PDRG1Q9NUG6 133 aa17.39■□□□□ 0.37
UPF1-202ENST00000594243 CFBP00751 764 aa17.38■□□□□ 0.37
UPF1-202ENST00000594243 AKR1A1P14550 325 aa17.38■□□□□ 0.37
UPF1-202ENST00000594243 ALDH5A1P51649 535 aaPredicted RBP17.38■□□□□ 0.37
UPF1-202ENST00000594243 EVCP57679 992 aa17.38■□□□□ 0.37
UPF1-202ENST00000594243 UPF3BQ9BZI7 483 aaKnown RBP17.38■□□□□ 0.37
UPF1-202ENST00000594243 FAM184BQ9ULE4 1060 aa17.38■□□□□ 0.37
UPF1-202ENST00000594243 GTF3C3Q9Y5Q9 886 aa17.38■□□□□ 0.37
UPF1-202ENST00000594243 CENPFP49454 3210 aa17.38■□□□□ 0.37
UPF1-202ENST00000594243 MORC4Q8TE76 937 aa17.37■□□□□ 0.37
UPF1-202ENST00000594243 TBC1D5Q92609 795 aa17.37■□□□□ 0.37
UPF1-202ENST00000594243 IL17RAQ96F46 866 aa17.37■□□□□ 0.37
UPF1-202ENST00000594243 PURBQ96QR8 312 aaKnown RBP17.37■□□□□ 0.37
UPF1-202ENST00000594243 ZHX1Q9UKY1 873 aaPredicted RBP17.37■□□□□ 0.37
UPF1-202ENST00000594243 FARP2O94887 1054 aaPredicted RBP17.36■□□□□ 0.37
UPF1-202ENST00000594243 RARBP10826 455 aa17.36■□□□□ 0.37
UPF1-202ENST00000594243 CDC27P30260 824 aa17.36■□□□□ 0.37
UPF1-202ENST00000594243 HSD17B4P51659 736 aa17.36■□□□□ 0.37
UPF1-202ENST00000594243 GHRHRQ02643 423 aa17.36■□□□□ 0.37
UPF1-202ENST00000594243 TOB2Q14106 344 aaPredicted RBP17.36■□□□□ 0.37
UPF1-202ENST00000594243 ARRDC4Q8NCT1 418 aa17.36■□□□□ 0.37
UPF1-202ENST00000594243 SYTL5Q8TDW5 730 aaPredicted RBP17.36■□□□□ 0.37
UPF1-202ENST00000594243 ZNF274Q96GC6 653 aaPredicted RBP17.36■□□□□ 0.37
UPF1-202ENST00000594243 ALDH8A1Q9H2A2 487 aaPredicted RBP17.36■□□□□ 0.37
UPF1-202ENST00000594243 FAM217BQ9NTX9 383 aaPredicted RBP17.36■□□□□ 0.37
UPF1-202ENST00000594243 ASTN1O14525 1302 aa17.36■□□□□ 0.37
UPF1-202ENST00000594243 GCOM1H8Y6P7 765 aaPredicted RBP17.35■□□□□ 0.37
UPF1-202ENST00000594243 POLR2MP0CAP2 368 aa17.35■□□□□ 0.37
UPF1-202ENST00000594243 PDIA3P30101 505 aaKnown RBP17.35■□□□□ 0.37
UPF1-202ENST00000594243 ADD1P35611 737 aaKnown RBP17.35■□□□□ 0.37
UPF1-202ENST00000594243 PDE4DQ08499 809 aa17.35■□□□□ 0.37
UPF1-202ENST00000594243 NECAB2Q7Z6G3 386 aa17.35■□□□□ 0.37
UPF1-202ENST00000594243 NSUN6Q8TEA1 469 aaKnown RBP17.35■□□□□ 0.37
UPF1-202ENST00000594243 TAAR1Q96RJ0 339 aa17.35■□□□□ 0.37
UPF1-202ENST00000594243 SMCHD1A6NHR9 2005 aa17.34■□□□□ 0.37
UPF1-202ENST00000594243 OPLAHO14841 1288 aa17.34■□□□□ 0.37
UPF1-202ENST00000594243 NID2Q14112 1375 aa17.34■□□□□ 0.37
UPF1-202ENST00000594243 ANKRD1Q15327 319 aa17.34■□□□□ 0.37
UPF1-202ENST00000594243 CCDC144BQ3MJ40 725 aa17.34■□□□□ 0.37
UPF1-202ENST00000594243 ARHGEF16Q5VV41 709 aa17.34■□□□□ 0.37
UPF1-202ENST00000594243 ANO1Q5XXA6 986 aa17.34■□□□□ 0.37
UPF1-202ENST00000594243 IQSEC1Q6DN90 963 aa17.34■□□□□ 0.37
UPF1-202ENST00000594243 UBE2Q1Q7Z7E8 422 aa17.34■□□□□ 0.37
UPF1-202ENST00000594243 PAWRQ96IZ0 340 aaKnown RBP17.34■□□□□ 0.37
UPF1-202ENST00000594243 IWS1Q96ST2 819 aa17.34■□□□□ 0.37
UPF1-202ENST00000594243 RMDN3Q96TC7 470 aa17.34■□□□□ 0.37
UPF1-202ENST00000594243 KATNBL1Q9H079 304 aa17.34■□□□□ 0.37
UPF1-202ENST00000594243 VTA1Q9NP79 307 aa17.34■□□□□ 0.37
UPF1-202ENST00000594243 V9GY48 417 aaPredicted RBP17.34■□□□□ 0.37
UPF1-202ENST00000594243 CNTNAP5Q8WYK1 1306 aa17.33■□□□□ 0.36
UPF1-202ENST00000594243 hCG_1642624A0A1W2PR95 340 aa17.33■□□□□ 0.36
UPF1-202ENST00000594243 DUSP11O75319 330 aaKnown RBP17.33■□□□□ 0.36
UPF1-202ENST00000594243 EDNRBP24530 442 aa17.33■□□□□ 0.36
UPF1-202ENST00000594243 FUT2Q10981 343 aa17.33■□□□□ 0.36
UPF1-202ENST00000594243 EEPD1Q7L9B9 569 aa17.33■□□□□ 0.36
UPF1-202ENST00000594243 CUL5Q93034 780 aa17.33■□□□□ 0.36
UPF1-202ENST00000594243 HTATIP2Q9BUP3 242 aa17.33■□□□□ 0.36
UPF1-202ENST00000594243 C11orf49Q9H6J7 331 aa17.33■□□□□ 0.36
UPF1-202ENST00000594243 XPNPEP3Q9NQH7 507 aa17.33■□□□□ 0.36
UPF1-202ENST00000594243 COL20A1Q9P218 1284 aa17.33■□□□□ 0.36
UPF1-202ENST00000594243 RBM27Q9P2N5 1060 aaKnown RBP17.33■□□□□ 0.36
UPF1-202ENST00000594243 KIAA0100Q14667 2235 aaKnown RBP17.33■□□□□ 0.36
UPF1-202ENST00000594243 MYH6P13533 1939 aa17.33■□□□□ 0.36
UPF1-202ENST00000594243 hCG_1984214I3L0E3 225 aa17.32■□□□□ 0.36
UPF1-202ENST00000594243 DNM1LO00429 736 aa17.32■□□□□ 0.36
UPF1-202ENST00000594243 HOXA13P31271 388 aaPredicted RBP17.32■□□□□ 0.36
UPF1-202ENST00000594243 CCT2P78371 535 aaKnown RBP17.32■□□□□ 0.36
UPF1-202ENST00000594243 TNFAIP2Q03169 654 aa17.32■□□□□ 0.36
UPF1-202ENST00000594243 STXBP2Q15833 593 aa17.32■□□□□ 0.36
UPF1-202ENST00000594243 TAPT1Q6NXT6 567 aa17.32■□□□□ 0.36
UPF1-202ENST00000594243 HEATR3Q7Z4Q2 680 aa17.32■□□□□ 0.36
UPF1-202ENST00000594243 RNF180Q86T96 592 aa17.32■□□□□ 0.36
UPF1-202ENST00000594243 ZNF713Q8N859 430 aaPredicted RBP17.32■□□□□ 0.36
UPF1-202ENST00000594243 UPF2Q9HAU5 1272 aaKnown RBP17.32■□□□□ 0.36
UPF1-202ENST00000594243 SPC25Q9HBM1 224 aa17.32■□□□□ 0.36
UPF1-202ENST00000594243 PXMP2Q9NR77 195 aa17.32■□□□□ 0.36
UPF1-202ENST00000594243 MKI67P46013 3256 aaKnown RBP17.32■□□□□ 0.36
UPF1-202ENST00000594243 KBTBD13C9JR72 458 aa17.31■□□□□ 0.36
UPF1-202ENST00000594243 MNX1P50219 401 aaPredicted RBP17.31■□□□□ 0.36
UPF1-202ENST00000594243 NEK4P51957 841 aa17.31■□□□□ 0.36
UPF1-202ENST00000594243 AKAP17AQ02040 695 aaKnown RBP17.31■□□□□ 0.36
UPF1-202ENST00000594243 FBXO16Q8IX29 292 aaPredicted RBP17.31■□□□□ 0.36
UPF1-202ENST00000594243 SMARCC2Q8TAQ2 1214 aa17.31■□□□□ 0.36
UPF1-202ENST00000594243 PSTPIP2Q9H939 334 aa17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms