RNA–Protein interactions for RNA: ENST00000593829.5

LSM4-203, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM4, Length 1,908 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-203ENST00000593829 CNTN2Q02246 1040 aa22.65■■□□□ 1.22
LSM4-203ENST00000593829 ZNF467Q7Z7K2 595 aaPredicted RBP22.65■■□□□ 1.22
LSM4-203ENST00000593829 MCF2L2Q86YR7 1114 aa22.65■■□□□ 1.22
LSM4-203ENST00000593829 ZNF274Q96GC6 653 aaPredicted RBP22.65■■□□□ 1.22
LSM4-203ENST00000593829 TINF2Q9BSI4 451 aa22.65■■□□□ 1.22
LSM4-203ENST00000593829 UNC93B1Q9H1C4 597 aa22.65■■□□□ 1.22
LSM4-203ENST00000593829 HMX1Q9NP08 348 aaPredicted RBP22.65■■□□□ 1.22
LSM4-203ENST00000593829 RPTORQ8N122 1335 aa22.64■■□□□ 1.22
LSM4-203ENST00000593829 MYH6P13533 1939 aa22.64■■□□□ 1.21
LSM4-203ENST00000593829 BAZ2BQ9UIF8 2168 aaKnown RBP22.64■■□□□ 1.21
LSM4-203ENST00000593829 ADD1P35611 737 aaKnown RBP22.64■■□□□ 1.21
LSM4-203ENST00000593829 NEK4P51957 841 aa22.64■■□□□ 1.21
LSM4-203ENST00000593829 ANKRD1Q15327 319 aa22.64■■□□□ 1.21
LSM4-203ENST00000593829 MSL3Q8N5Y2 521 aaKnown RBP22.64■■□□□ 1.21
LSM4-203ENST00000593829 LARP6Q9BRS8 491 aaKnown RBP22.64■■□□□ 1.21
LSM4-203ENST00000593829 FUT2Q10981 343 aa22.63■■□□□ 1.21
LSM4-203ENST00000593829 PLXNA1Q9UIW2 1896 aa22.63■■□□□ 1.21
LSM4-203ENST00000593829 CNTNAP5Q8WYK1 1306 aa22.63■■□□□ 1.21
LSM4-203ENST00000593829 RPS6P62753 249 aaKnown RBP22.63■■□□□ 1.21
LSM4-203ENST00000593829 MAMDC4Q6UXC1 1216 aa22.63■■□□□ 1.21
LSM4-203ENST00000593829 FGD4Q96M96 766 aa22.63■■□□□ 1.21
LSM4-203ENST00000593829 CAPN15O75808 1086 aa22.62■■□□□ 1.21
LSM4-203ENST00000593829 CALML3P27482 149 aa22.62■■□□□ 1.21
LSM4-203ENST00000593829 SLC30A10Q6XR72 485 aa22.62■■□□□ 1.21
LSM4-203ENST00000593829 SYNGAP1Q96PV0 1343 aa22.61■■□□□ 1.21
LSM4-203ENST00000593829 SOWAHBA6NEL2 793 aa22.61■■□□□ 1.21
LSM4-203ENST00000593829 AK2P54819 239 aa22.61■■□□□ 1.21
LSM4-203ENST00000593829 CCT2P78371 535 aaKnown RBP22.61■■□□□ 1.21
LSM4-203ENST00000593829 XRN2Q9H0D6 950 aaKnown RBP eCLIP22.61■■□□□ 1.211e-7■■■□□ 17.2
LSM4-203ENST00000593829 hCG_1642624A0A1W2PR95 340 aa22.61■■□□□ 1.21
LSM4-203ENST00000593829 SOX10P56693 466 aa22.61■■□□□ 1.21
LSM4-203ENST00000593829 TBC1D5Q92609 795 aa22.61■■□□□ 1.21
LSM4-203ENST00000593829 PAK6Q9NQU5 681 aaPredicted RBP22.61■■□□□ 1.21
LSM4-203ENST00000593829 ADD3Q9UEY8 706 aaKnown RBP22.61■■□□□ 1.21
LSM4-203ENST00000593829 V9GY48 417 aaPredicted RBP22.61■■□□□ 1.21
LSM4-203ENST00000593829 GJB1P08034 283 aa22.6■■□□□ 1.21
LSM4-203ENST00000593829 PURBQ96QR8 312 aaKnown RBP22.6■■□□□ 1.21
LSM4-203ENST00000593829 KIF2CQ99661 725 aa22.6■■□□□ 1.21
LSM4-203ENST00000593829 NCOA5Q9HCD5 579 aaKnown RBP22.6■■□□□ 1.21
LSM4-203ENST00000593829 NRBP1Q9UHY1 535 aa22.6■■□□□ 1.21
LSM4-203ENST00000593829 ASB14A6NK59 587 aa22.59■■□□□ 1.21
LSM4-203ENST00000593829 OPLAHO14841 1288 aa22.59■■□□□ 1.21
LSM4-203ENST00000593829 CFBP00751 764 aa22.59■■□□□ 1.21
LSM4-203ENST00000593829 CYBAP13498 195 aa22.59■■□□□ 1.21
LSM4-203ENST00000593829 CCND3P30281 292 aaPredicted RBP22.59■■□□□ 1.21
LSM4-203ENST00000593829 SKOR2Q2VWA4 1001 aaPredicted RBP22.59■■□□□ 1.21
LSM4-203ENST00000593829 SAMD3Q8N6K7 520 aa22.59■■□□□ 1.21
LSM4-203ENST00000593829 MAP3K20Q9NYL2 800 aaKnown RBP22.59■■□□□ 1.21
LSM4-203ENST00000593829 TPCN1Q9ULQ1 816 aa22.59■■□□□ 1.21
LSM4-203ENST00000593829 CNPY2Q9Y2B0 182 aa22.59■■□□□ 1.21
LSM4-203ENST00000593829 STK3Q13188 491 aa22.59■■□□□ 1.21
LSM4-203ENST00000593829 ARMCX2Q7L311 632 aa22.59■■□□□ 1.21
LSM4-203ENST00000593829 ASTN1O14525 1302 aa22.58■■□□□ 1.21
LSM4-203ENST00000593829 POTEFA5A3E0 1075 aa22.58■■□□□ 1.21
LSM4-203ENST00000593829 SNAI1O95863 264 aaPredicted RBP22.58■■□□□ 1.21
LSM4-203ENST00000593829 GHRHRQ02643 423 aa22.58■■□□□ 1.21
LSM4-203ENST00000593829 NTRK3Q16288 839 aa22.58■■□□□ 1.21
LSM4-203ENST00000593829 PRAMEF19Q5SWL8 479 aa22.58■■□□□ 1.21
LSM4-203ENST00000593829 HEATR3Q7Z4Q2 680 aa22.58■■□□□ 1.21
LSM4-203ENST00000593829 SPRYD3Q8NCJ5 442 aa22.58■■□□□ 1.21
LSM4-203ENST00000593829 TRPV1Q8NER1 839 aa22.58■■□□□ 1.21
LSM4-203ENST00000593829 SYTL5Q8TDW5 730 aaPredicted RBP22.58■■□□□ 1.21
LSM4-203ENST00000593829 DEFB118Q96PH6 123 aa22.58■■□□□ 1.21
LSM4-203ENST00000593829 LOC102724159A0A0B4J2E5 919 aa22.57■■□□□ 1.2
LSM4-203ENST00000593829 CNGA1P29973 690 aa22.57■■□□□ 1.2
LSM4-203ENST00000593829 HSD17B4P51659 736 aa22.57■■□□□ 1.2
LSM4-203ENST00000593829 PWP2Q15269 919 aaKnown RBP22.57■■□□□ 1.2
LSM4-203ENST00000593829 DNERQ8NFT8 737 aa22.57■■□□□ 1.2
LSM4-203ENST00000593829 GRPEL1Q9HAV7 217 aa22.57■■□□□ 1.2
LSM4-203ENST00000593829 CDKN2AIPQ9NXV6 580 aaPredicted RBP22.57■■□□□ 1.2
LSM4-203ENST00000593829 RBM27Q9P2N5 1060 aaKnown RBP22.57■■□□□ 1.2
LSM4-203ENST00000593829 CPLX1O14810 134 aa22.57■■□□□ 1.2
LSM4-203ENST00000593829 IFNAR1P17181 557 aa22.57■■□□□ 1.2
LSM4-203ENST00000593829 ALDH5A1P51649 535 aaPredicted RBP22.57■■□□□ 1.2
LSM4-203ENST00000593829 U2AF1L4Q8WU68 220 aaKnown RBP22.57■■□□□ 1.2
LSM4-203ENST00000593829 GBP4Q96PP9 640 aa22.57■■□□□ 1.2
LSM4-203ENST00000593829 RBBP6Q7Z6E9 1792 aaKnown RBP22.56■■□□□ 1.2
LSM4-203ENST00000593829 GCOM1H8Y6P7 765 aaPredicted RBP22.56■■□□□ 1.2
LSM4-203ENST00000593829 PRPF3O43395 683 aaKnown RBP22.56■■□□□ 1.2
LSM4-203ENST00000593829 SGPL1O95470 568 aa22.56■■□□□ 1.2
LSM4-203ENST00000593829 POLR2MP0CAP2 368 aa22.56■■□□□ 1.2
LSM4-203ENST00000593829 GJA8P48165 433 aa22.56■■□□□ 1.2
LSM4-203ENST00000593829 AKAP17AQ02040 695 aaKnown RBP22.56■■□□□ 1.2
LSM4-203ENST00000593829 CPLX2Q6PUV4 134 aaKnown RBP22.56■■□□□ 1.2
LSM4-203ENST00000593829 NOL8Q76FK4 1167 aaKnown RBP22.56■■□□□ 1.2
LSM4-203ENST00000593829 GPKOWQ92917 476 aaPredicted RBP eCLIP22.56■■□□□ 1.2
LSM4-203ENST00000593829 PHKBQ93100 1093 aa22.56■■□□□ 1.2
LSM4-203ENST00000593829 MPHOSPH6Q99547 160 aaKnown RBP22.56■■□□□ 1.2
LSM4-203ENST00000593829 ABHD16BQ9H3Z7 469 aa22.56■■□□□ 1.2
LSM4-203ENST00000593829 COL20A1Q9P218 1284 aa22.56■■□□□ 1.2
LSM4-203ENST00000593829 hCG_1984214I3L0E3 225 aa22.55■■□□□ 1.2
LSM4-203ENST00000593829 PFKFB2O60825 505 aa22.55■■□□□ 1.2
LSM4-203ENST00000593829 WWC2Q6AWC2 1192 aa22.55■■□□□ 1.2
LSM4-203ENST00000593829 ZNF713Q8N859 430 aaPredicted RBP22.55■■□□□ 1.2
LSM4-203ENST00000593829 PANK2Q9BZ23 570 aa22.55■■□□□ 1.2
LSM4-203ENST00000593829 LCTP09848 1927 aa22.55■■□□□ 1.2
LSM4-203ENST00000593829 B4DLN1 442 aa22.55■■□□□ 1.2
LSM4-203ENST00000593829 SEPT4O43236 478 aa22.55■■□□□ 1.2
LSM4-203ENST00000593829 ZNF865P0CJ78 1059 aaPredicted RBP22.55■■□□□ 1.2
LSM4-203ENST00000593829 HOXA13P31271 388 aaPredicted RBP22.55■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms