RNA–Protein interactions for RNA: ENST00000588059.5

VPS4B-202, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 5

Gene VPS4B, Length 1,252 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-202ENST00000588059 STAG1Q8WVM7 1258 aa13.14□□□□□ -0.31
VPS4B-202ENST00000588059 ARNTL2Q8WYA1 636 aa13.14□□□□□ -0.31
VPS4B-202ENST00000588059 APPBP2Q92624 585 aa13.14□□□□□ -0.31
VPS4B-202ENST00000588059 PURBQ96QR8 312 aaKnown RBP13.14□□□□□ -0.31
VPS4B-202ENST00000588059 ZNF287Q9HBT7 754 aa13.14□□□□□ -0.31
VPS4B-202ENST00000588059 ZBTB40Q9NUA8 1239 aa13.14□□□□□ -0.31
VPS4B-202ENST00000588059 MUC6Q6W4X9 2439 aa13.14□□□□□ -0.31
VPS4B-202ENST00000588059 TRIP12Q14669 1992 aaPredicted RBP13.14□□□□□ -0.31
VPS4B-202ENST00000588059 GPAA1O43292 621 aa13.13□□□□□ -0.31
VPS4B-202ENST00000588059 RFC2P35250 354 aa13.13□□□□□ -0.31
VPS4B-202ENST00000588059 SLC1A4P43007 532 aa13.13□□□□□ -0.31
VPS4B-202ENST00000588059 SNAP25P60880 206 aa13.13□□□□□ -0.31
VPS4B-202ENST00000588059 IKQ13123 557 aaPredicted RBP13.13□□□□□ -0.31
VPS4B-202ENST00000588059 GRB10Q13322 594 aa13.13□□□□□ -0.31
VPS4B-202ENST00000588059 RASGRP2Q7LDG7 609 aa13.13□□□□□ -0.31
VPS4B-202ENST00000588059 SPRED2Q7Z698 418 aa13.13□□□□□ -0.31
VPS4B-202ENST00000588059 HERC6Q8IVU3 1022 aa13.13□□□□□ -0.31
VPS4B-202ENST00000588059 KBTBD3Q8NAB2 608 aa13.13□□□□□ -0.31
VPS4B-202ENST00000588059 PHOSPHO2Q8TCD6 241 aa13.13□□□□□ -0.31
VPS4B-202ENST00000588059 HLA-CQ95604 372 aa13.13□□□□□ -0.31
VPS4B-202ENST00000588059 CHMP4CQ96CF2 233 aa13.13□□□□□ -0.31
VPS4B-202ENST00000588059 POLR3EQ9NVU0 708 aa13.13□□□□□ -0.31
VPS4B-202ENST00000588059 PIEZO1Q92508 2521 aa13.12□□□□□ -0.31
VPS4B-202ENST00000588059 FAM86C2PA6NEL3 165 aa13.12□□□□□ -0.31
VPS4B-202ENST00000588059 M0R2C6 588 aa13.12□□□□□ -0.31
VPS4B-202ENST00000588059 PITPNM1O00562 1244 aa13.12□□□□□ -0.31
VPS4B-202ENST00000588059 LPXNO60711 386 aa13.12□□□□□ -0.31
VPS4B-202ENST00000588059 PLA2G6O60733 806 aa13.12□□□□□ -0.31
VPS4B-202ENST00000588059 GPR37L1O60883 481 aa13.12□□□□□ -0.31
VPS4B-202ENST00000588059 MYL3P08590 195 aa13.12□□□□□ -0.31
VPS4B-202ENST00000588059 TSPY3P0CV98 308 aa13.12□□□□□ -0.31
VPS4B-202ENST00000588059 TSPY8P0CW00 308 aa13.12□□□□□ -0.31
VPS4B-202ENST00000588059 MCCP23508 829 aa13.12□□□□□ -0.31
VPS4B-202ENST00000588059 NSMFQ6X4W1 530 aa13.12□□□□□ -0.31
VPS4B-202ENST00000588059 KCTD1Q719H9 257 aa13.12□□□□□ -0.31
VPS4B-202ENST00000588059 MTG1Q9BT17 334 aaPredicted RBP13.12□□□□□ -0.31
VPS4B-202ENST00000588059 PRR12Q9ULL5 1215 aa13.12□□□□□ -0.31
VPS4B-202ENST00000588059 SIP14410 1827 aa13.11□□□□□ -0.31
VPS4B-202ENST00000588059 RNF113AO15541 343 aaKnown RBP13.11□□□□□ -0.31
VPS4B-202ENST00000588059 SMARCA5O60264 1052 aaPredicted RBP13.11□□□□□ -0.31
VPS4B-202ENST00000588059 IQCF3P0C7M6 154 aa13.11□□□□□ -0.31
VPS4B-202ENST00000588059 GNAT2P19087 354 aa13.11□□□□□ -0.31
VPS4B-202ENST00000588059 CPT1AP50416 773 aa13.11□□□□□ -0.31
VPS4B-202ENST00000588059 ALDH5A1P51649 535 aaPredicted RBP13.11□□□□□ -0.31
VPS4B-202ENST00000588059 TFAP4Q01664 338 aa13.11□□□□□ -0.31
VPS4B-202ENST00000588059 NBPF20Q3BBV1 942 aa13.11□□□□□ -0.31
VPS4B-202ENST00000588059 FAM47CQ5HY64 1035 aa13.11□□□□□ -0.31
VPS4B-202ENST00000588059 PPP1R13LQ8WUF5 828 aa13.11□□□□□ -0.31
VPS4B-202ENST00000588059 WDR11Q9BZH6 1224 aa13.11□□□□□ -0.31
VPS4B-202ENST00000588059 LRRCC1Q9C099 1032 aa13.11□□□□□ -0.31
VPS4B-202ENST00000588059 CD320Q9NPF0 282 aa13.11□□□□□ -0.31
VPS4B-202ENST00000588059 ECHDC1Q9NTX5 307 aa13.11□□□□□ -0.31
VPS4B-202ENST00000588059 CCPG1Q9ULG6 757 aa13.11□□□□□ -0.31
VPS4B-202ENST00000588059 DDX19BQ9UMR2 479 aa13.11□□□□□ -0.31
VPS4B-202ENST00000588059 RBM47A0AV96 593 aaKnown RBP13.1□□□□□ -0.31
VPS4B-202ENST00000588059 KIF28PB7ZC32 967 aa13.1□□□□□ -0.31
VPS4B-202ENST00000588059 BAIAP3O94812 1187 aa13.1□□□□□ -0.31
VPS4B-202ENST00000588059 APPP05067 770 aa13.1□□□□□ -0.31
VPS4B-202ENST00000588059 PDE4BQ07343 736 aa13.1□□□□□ -0.31
VPS4B-202ENST00000588059 RCSD1Q6JBY9 416 aa13.1□□□□□ -0.31
VPS4B-202ENST00000588059 NFRKBQ6P4R8 1299 aa13.1□□□□□ -0.31
VPS4B-202ENST00000588059 IFNL3Q8IZI9 196 aa13.1□□□□□ -0.31
VPS4B-202ENST00000588059 OR6J1Q8NGC5 347 aa13.1□□□□□ -0.31
VPS4B-202ENST00000588059 FTOQ9C0B1 505 aaKnown RBP eCLIP13.1□□□□□ -0.31
VPS4B-202ENST00000588059 ADD3Q9UEY8 706 aaKnown RBP13.1□□□□□ -0.31
VPS4B-202ENST00000588059 LOC102724159A0A0B4J2E5 919 aa13.09□□□□□ -0.31
VPS4B-202ENST00000588059 LCHNA4D1U4 455 aa13.09□□□□□ -0.31
VPS4B-202ENST00000588059 PATL2C9JE40 543 aaKnown RBP13.09□□□□□ -0.31
VPS4B-202ENST00000588059 PI4K2BG5E9Z4 385 aa13.09□□□□□ -0.31
VPS4B-202ENST00000588059 NFIBO00712 420 aa13.09□□□□□ -0.31
VPS4B-202ENST00000588059 ICAM1P05362 532 aa13.09□□□□□ -0.31
VPS4B-202ENST00000588059 ZFYP08048 801 aaPredicted RBP13.09□□□□□ -0.31
VPS4B-202ENST00000588059 MS4A1P11836 297 aa13.09□□□□□ -0.31
VPS4B-202ENST00000588059 BAATQ14032 418 aaPredicted RBP13.09□□□□□ -0.31
VPS4B-202ENST00000588059 PWP2Q15269 919 aaKnown RBP13.09□□□□□ -0.31
VPS4B-202ENST00000588059 RETREG2Q8NC44 543 aa13.09□□□□□ -0.31
VPS4B-202ENST00000588059 GDPD5Q8WTR4 605 aa13.09□□□□□ -0.31
VPS4B-202ENST00000588059 GPHNQ9NQX3 736 aaPredicted RBP13.09□□□□□ -0.31
VPS4B-202ENST00000588059 STX8Q9UNK0 236 aa13.09□□□□□ -0.31
VPS4B-202ENST00000588059 WDR5P61964 334 aaKnown RBP13.08□□□□□ -0.32
VPS4B-202ENST00000588059 PTPN11Q06124 597 aaPredicted RBP13.08□□□□□ -0.32
VPS4B-202ENST00000588059 PPARAQ07869 468 aa13.08□□□□□ -0.32
VPS4B-202ENST00000588059 BFSP2Q13515 415 aa13.08□□□□□ -0.32
VPS4B-202ENST00000588059 TSHZ3Q63HK5 1081 aa13.08□□□□□ -0.32
VPS4B-202ENST00000588059 SLC30A10Q6XR72 485 aa13.08□□□□□ -0.32
VPS4B-202ENST00000588059 TMCO2Q7Z6W1 182 aaPredicted RBP13.08□□□□□ -0.32
VPS4B-202ENST00000588059 CTAGE1Q96RT6 745 aa13.08□□□□□ -0.32
VPS4B-202ENST00000588059 NACAP1Q9BZK3 213 aa13.08□□□□□ -0.32
VPS4B-202ENST00000588059 RANBP17Q9H2T7 1088 aaKnown RBP13.08□□□□□ -0.32
VPS4B-202ENST00000588059 IL17RBQ9NRM6 502 aa13.08□□□□□ -0.32
VPS4B-202ENST00000588059 LMCD1Q9NZU5 365 aa13.08□□□□□ -0.32
VPS4B-202ENST00000588059 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.08□□□□□ -0.32
VPS4B-202ENST00000588059 RAD50Q92878 1312 aa13.08□□□□□ -0.32
VPS4B-202ENST00000588059 A6NJR5 290 aa13.07□□□□□ -0.32
VPS4B-202ENST00000588059 NMT2O60551 498 aa13.07□□□□□ -0.32
VPS4B-202ENST00000588059 SLC3A2P08195 630 aaKnown RBP13.07□□□□□ -0.32
VPS4B-202ENST00000588059 KCNJ6P48051 423 aa13.07□□□□□ -0.32
VPS4B-202ENST00000588059 GPNMBQ14956 572 aa13.07□□□□□ -0.32
VPS4B-202ENST00000588059 PPP2R5BQ15173 497 aa13.07□□□□□ -0.32
VPS4B-202ENST00000588059 BRDTQ58F21 947 aaPredicted RBP13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms