RNA–Protein interactions for RNA: ENST00000582594.5

PPP4R1-222, Transcript of protein phosphatase 4 regulatory subunit 1, human

TSL 1 (best)

Gene PPP4R1, Length 2,982 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PPP4R1-222	ENST00000582594	MIIP	Q5JXC2	388 aa		10.64	□□□□□ -0.71
PPP4R1-222	ENST00000582594	GBP6	Q6ZN66	633 aa		10.64	□□□□□ -0.71
PPP4R1-222	ENST00000582594	ZNF662	Q6ZS27	426 aa		10.64	□□□□□ -0.71
PPP4R1-222	ENST00000582594	BLID	Q8IZY5	108 aa		10.64	□□□□□ -0.71
PPP4R1-222	ENST00000582594	OTUD6B	Q8N6M0	293 aa		10.64	□□□□□ -0.71
PPP4R1-222	ENST00000582594	P2RX5	Q93086	422 aa		10.64	□□□□□ -0.71
PPP4R1-222	ENST00000582594	RNPC3	Q96LT9	517 aa	Known RBP	10.64	□□□□□ -0.71
PPP4R1-222	ENST00000582594	NUP58	Q9BVL2	599 aa		10.64	□□□□□ -0.71
PPP4R1-222	ENST00000582594	MMRN2	Q9H8L6	949 aa		10.64	□□□□□ -0.71
PPP4R1-222	ENST00000582594	NFU1	Q9UMS0	254 aa		10.64	□□□□□ -0.71
PPP4R1-222	ENST00000582594	TNS2	Q63HR2	1409 aa		10.63	□□□□□ -0.71
PPP4R1-222	ENST00000582594	USP17L12	C9JPN9	530 aa		10.63	□□□□□ -0.71
PPP4R1-222	ENST00000582594	USP17L21	D6R901	530 aa		10.63	□□□□□ -0.71
PPP4R1-222	ENST00000582594	KIAA0754	O94854	1291 aa		10.63	□□□□□ -0.71
PPP4R1-222	ENST00000582594	IBSP	P21815	317 aa	Predicted RBP	10.63	□□□□□ -0.71
PPP4R1-222	ENST00000582594	GYG1	P46976	350 aa		10.63	□□□□□ -0.71
PPP4R1-222	ENST00000582594	CARS	P49589	748 aa	Known RBP	10.63	□□□□□ -0.71
PPP4R1-222	ENST00000582594	RNF187	Q5TA31	235 aa	Predicted RBP	10.63	□□□□□ -0.71
PPP4R1-222	ENST00000582594	TSGA10	Q9BZW7	698 aa		10.63	□□□□□ -0.71
PPP4R1-222	ENST00000582594	HYOU1	Q9Y4L1	999 aa		10.63	□□□□□ -0.71
PPP4R1-222	ENST00000582594	RHOBTB3	O94955	611 aa		10.63	□□□□□ -0.71
PPP4R1-222	ENST00000582594	CALM1	P0DP23	149 aa		10.63	□□□□□ -0.71
PPP4R1-222	ENST00000582594	CALM2	P0DP24	149 aa		10.63	□□□□□ -0.71
PPP4R1-222	ENST00000582594	CALM3	P0DP25	149 aa		10.63	□□□□□ -0.71
PPP4R1-222	ENST00000582594	CYP2D6	P10635	497 aa		10.63	□□□□□ -0.71
PPP4R1-222	ENST00000582594	PAFAH1B1	P43034	410 aa		10.63	□□□□□ -0.71
PPP4R1-222	ENST00000582594	ASIC1	P78348	528 aa		10.63	□□□□□ -0.71
PPP4R1-222	ENST00000582594	NKX1-1	Q15270	411 aa	Predicted RBP	10.63	□□□□□ -0.71
PPP4R1-222	ENST00000582594	PFKFB3	Q16875	520 aa	Predicted RBP	10.63	□□□□□ -0.71
PPP4R1-222	ENST00000582594	CCDC91	Q7Z6B0	441 aa		10.63	□□□□□ -0.71
PPP4R1-222	ENST00000582594	POTED	Q86YR6	584 aa		10.63	□□□□□ -0.71
PPP4R1-222	ENST00000582594	GLI1	P08151	1106 aa		10.62	□□□□□ -0.71
PPP4R1-222	ENST00000582594	PLCG1	P19174	1290 aa		10.62	□□□□□ -0.71
PPP4R1-222	ENST00000582594	CCNE1	P24864	410 aa		10.62	□□□□□ -0.71
PPP4R1-222	ENST00000582594	MAGEA1	P43355	309 aa		10.62	□□□□□ -0.71
PPP4R1-222	ENST00000582594	TRAPPC10	P48553	1259 aa		10.62	□□□□□ -0.71
PPP4R1-222	ENST00000582594	SEC24C	P53992	1094 aa		10.62	□□□□□ -0.71
PPP4R1-222	ENST00000582594	RASSF7	Q02833	373 aa		10.62	□□□□□ -0.71
PPP4R1-222	ENST00000582594	KCNB1	Q14721	858 aa		10.62	□□□□□ -0.71
PPP4R1-222	ENST00000582594	TRADD	Q15628	312 aa		10.62	□□□□□ -0.71
PPP4R1-222	ENST00000582594	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	10.62	□□□□□ -0.71
PPP4R1-222	ENST00000582594	RRAGA	Q7L523	313 aa		10.62	□□□□□ -0.71
PPP4R1-222	ENST00000582594	DZIP3	Q86Y13	1208 aa	Known RBP	10.62	□□□□□ -0.71
PPP4R1-222	ENST00000582594	CENPH	Q9H3R5	247 aa		10.62	□□□□□ -0.71
PPP4R1-222	ENST00000582594	EPB41L5	Q9HCM4	733 aa		10.62	□□□□□ -0.71
PPP4R1-222	ENST00000582594	ANAPC4	Q9UJX5	808 aa		10.62	□□□□□ -0.71
PPP4R1-222	ENST00000582594	CCDC194	A0A1B0GVG4	234 aa		10.62	□□□□□ -0.71
PPP4R1-222	ENST00000582594	DDAH1	O94760	285 aa		10.62	□□□□□ -0.71
PPP4R1-222	ENST00000582594	GUCY2D	Q02846	1103 aa		10.62	□□□□□ -0.71
PPP4R1-222	ENST00000582594	GFPT1	Q06210	699 aa	Predicted RBP	10.62	□□□□□ -0.71
PPP4R1-222	ENST00000582594	CFAP58	Q5T655	872 aa		10.62	□□□□□ -0.71
PPP4R1-222	ENST00000582594	ARL6IP4	Q66PJ3	421 aa	Known RBP	10.62	□□□□□ -0.71
PPP4R1-222	ENST00000582594	ALS2CR12	Q96Q35	445 aa		10.62	□□□□□ -0.71
PPP4R1-222	ENST00000582594	CEP89	Q96ST8	783 aa		10.62	□□□□□ -0.71
PPP4R1-222	ENST00000582594	RIOK1	Q9BRS2	568 aa	Known RBP	10.62	□□□□□ -0.71
PPP4R1-222	ENST00000582594	SLC39A2	Q9NP94	309 aa		10.62	□□□□□ -0.71
PPP4R1-222	ENST00000582594	PAPPA	Q13219	1627 aa		10.62	□□□□□ -0.71
PPP4R1-222	ENST00000582594	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	10.62	□□□□□ -0.71
PPP4R1-222	ENST00000582594	DUOX1	Q9NRD9	1551 aa		10.62	□□□□□ -0.71
PPP4R1-222	ENST00000582594	LRRC53	A6NM62	1247 aa		10.62	□□□□□ -0.71
PPP4R1-222	ENST00000582594	SKOR1	P84550	965 aa		10.62	□□□□□ -0.71
PPP4R1-222	ENST00000582594	SWT1	Q5T5J6	900 aa	Known RBP	10.62	□□□□□ -0.71
PPP4R1-222	ENST00000582594	SUSD4	Q5VX71	490 aa		10.62	□□□□□ -0.71
PPP4R1-222	ENST00000582594	ALS2CL	Q60I27	953 aa		10.62	□□□□□ -0.71
PPP4R1-222	ENST00000582594	EMB	Q6PCB8	327 aa		10.62	□□□□□ -0.71
PPP4R1-222	ENST00000582594	STAG2	Q8N3U4	1231 aa		10.62	□□□□□ -0.71
PPP4R1-222	ENST00000582594	DHTKD1	Q96HY7	919 aa	Predicted RBP	10.62	□□□□□ -0.71
PPP4R1-222	ENST00000582594	SLC4A9	Q96Q91	983 aa		10.62	□□□□□ -0.71
PPP4R1-222	ENST00000582594	ZNF233	A6NK53	670 aa		10.61	□□□□□ -0.71
PPP4R1-222	ENST00000582594	HEXIM1	O94992	359 aa	Known RBP	10.61	□□□□□ -0.71
PPP4R1-222	ENST00000582594	TCP1	P17987	556 aa	Known RBP	10.61	□□□□□ -0.71
PPP4R1-222	ENST00000582594	CHRND	Q07001	517 aa		10.61	□□□□□ -0.71
PPP4R1-222	ENST00000582594	CNPY4	Q8N129	248 aa		10.61	□□□□□ -0.71
PPP4R1-222	ENST00000582594	CCDC155	Q8N6L0	562 aa		10.61	□□□□□ -0.71
PPP4R1-222	ENST00000582594	RETREG2	Q8NC44	543 aa		10.61	□□□□□ -0.71
PPP4R1-222	ENST00000582594	NOC3L	Q8WTT2	800 aa	Known RBP	10.61	□□□□□ -0.71
PPP4R1-222	ENST00000582594	MTMR8	Q96EF0	704 aa		10.61	□□□□□ -0.71
PPP4R1-222	ENST00000582594	JPH2	Q9BR39	696 aa	Predicted RBP	10.61	□□□□□ -0.71
PPP4R1-222	ENST00000582594	CD248	Q9HCU0	757 aa		10.61	□□□□□ -0.71
PPP4R1-222	ENST00000582594	KBTBD4	Q9NVX7	518 aa		10.61	□□□□□ -0.71
PPP4R1-222	ENST00000582594	PACSIN2	Q9UNF0	486 aa	Predicted RBP	10.61	□□□□□ -0.71
PPP4R1-222	ENST00000582594	HPD	P32754	393 aa	Predicted RBP	10.61	□□□□□ -0.71
PPP4R1-222	ENST00000582594	LSP1	P33241	339 aa		10.61	□□□□□ -0.71
PPP4R1-222	ENST00000582594	SLC1A4	P43007	532 aa		10.61	□□□□□ -0.71
PPP4R1-222	ENST00000582594	ENOX2	Q16206	610 aa	Known RBP	10.61	□□□□□ -0.71
PPP4R1-222	ENST00000582594	CABP7	Q86V35	215 aa		10.61	□□□□□ -0.71
PPP4R1-222	ENST00000582594	PROCA1	Q8NCQ7	364 aa	Predicted RBP	10.61	□□□□□ -0.71
PPP4R1-222	ENST00000582594	TLR10	Q9BXR5	811 aa		10.61	□□□□□ -0.71
PPP4R1-222	ENST00000582594		A0A0G2JS52	829 aa		10.6	□□□□□ -0.71
PPP4R1-222	ENST00000582594	BICDL2	A1A5D9	508 aa		10.6	□□□□□ -0.71
PPP4R1-222	ENST00000582594	FTCD	O95954	541 aa		10.6	□□□□□ -0.71
PPP4R1-222	ENST00000582594	EPB41	P11171	864 aa	Known RBP	10.6	□□□□□ -0.71
PPP4R1-222	ENST00000582594	MAP2K2	P36507	400 aa		10.6	□□□□□ -0.71
PPP4R1-222	ENST00000582594	IGHMBP2	P38935	993 aa	Known RBP	10.6	□□□□□ -0.71
PPP4R1-222	ENST00000582594	FNTA	P49354	379 aa		10.6	□□□□□ -0.71
PPP4R1-222	ENST00000582594	HDLBP	Q00341	1268 aa	Known RBP	10.6	□□□□□ -0.71
PPP4R1-222	ENST00000582594	TDRD12	Q587J7	1177 aa	Known RBP	10.6	□□□□□ -0.71
PPP4R1-222	ENST00000582594	NAA35	Q5VZE5	725 aa		10.6	□□□□□ -0.71
PPP4R1-222	ENST00000582594	B4GALNT4	Q76KP1	1039 aa		10.6	□□□□□ -0.71
PPP4R1-222	ENST00000582594	FAM114A1	Q8IWE2	563 aa		10.6	□□□□□ -0.71

Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms