RNA–Protein interactions for RNA: ENST00000581570.5

SS18-219, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-219ENST00000581570 NEDD1Q8NHV4 660 aa15.16■□□□□ 0.02
SS18-219ENST00000581570 CHMP4CQ96CF2 233 aa15.16■□□□□ 0.02
SS18-219ENST00000581570 FTOQ9C0B1 505 aaKnown RBP eCLIP15.16■□□□□ 0.02
SS18-219ENST00000581570 C11orf16Q9NQ32 467 aa15.16■□□□□ 0.02
SS18-219ENST00000581570 GPHNQ9NQX3 736 aaPredicted RBP15.16■□□□□ 0.02
SS18-219ENST00000581570 REV3LO60673 3130 aa15.15■□□□□ 0.02
SS18-219ENST00000581570 TSPY3P0CV98 308 aa15.15■□□□□ 0.02
SS18-219ENST00000581570 TSPY8P0CW00 308 aa15.15■□□□□ 0.02
SS18-219ENST00000581570 MCCP23508 829 aa15.15■□□□□ 0.02
SS18-219ENST00000581570 SLC1A4P43007 532 aa15.15■□□□□ 0.02
SS18-219ENST00000581570 TDO2P48775 406 aa15.15■□□□□ 0.02
SS18-219ENST00000581570 SNAP25P60880 206 aa15.15■□□□□ 0.02
SS18-219ENST00000581570 PURAQ00577 322 aaKnown RBP15.15■□□□□ 0.02
SS18-219ENST00000581570 MUM1L1Q5H9M0 696 aa15.15■□□□□ 0.02
SS18-219ENST00000581570 FAM47CQ5HY64 1035 aa15.15■□□□□ 0.02
SS18-219ENST00000581570 NSMFQ6X4W1 530 aa15.15■□□□□ 0.02
SS18-219ENST00000581570 MORC4Q8TE76 937 aa15.15■□□□□ 0.02
SS18-219ENST00000581570 OSBP2Q969R2 916 aa15.15■□□□□ 0.02
SS18-219ENST00000581570 GMCL1Q96IK5 515 aa15.15■□□□□ 0.02
SS18-219ENST00000581570 PURBQ96QR8 312 aaKnown RBP15.15■□□□□ 0.02
SS18-219ENST00000581570 MTG1Q9BT17 334 aaPredicted RBP15.15■□□□□ 0.02
SS18-219ENST00000581570 WDR11Q9BZH6 1224 aa15.15■□□□□ 0.02
SS18-219ENST00000581570 BDP1A6H8Y1 2624 aa15.15■□□□□ 0.02
SS18-219ENST00000581570 PI4K2BG5E9Z4 385 aa15.14■□□□□ 0.01
SS18-219ENST00000581570 PLA2G6O60733 806 aa15.14■□□□□ 0.01
SS18-219ENST00000581570 APPP05067 770 aa15.14■□□□□ 0.01
SS18-219ENST00000581570 IQCF3P0C7M6 154 aa15.14■□□□□ 0.01
SS18-219ENST00000581570 CPT1AP50416 773 aa15.14■□□□□ 0.01
SS18-219ENST00000581570 TFAP4Q01664 338 aa15.14■□□□□ 0.01
SS18-219ENST00000581570 NBPF20Q3BBV1 942 aa15.14■□□□□ 0.01
SS18-219ENST00000581570 APPBP2Q92624 585 aa15.14■□□□□ 0.01
SS18-219ENST00000581570 EPB41L4AQ9HCS5 686 aaPredicted RBP15.14■□□□□ 0.01
SS18-219ENST00000581570 PRRC2BQ5JSZ5 2229 aaKnown RBP15.14■□□□□ 0.01
SS18-219ENST00000581570 PITPNM1O00562 1244 aa15.13■□□□□ 0.01
SS18-219ENST00000581570 GPAA1O43292 621 aa15.13■□□□□ 0.01
SS18-219ENST00000581570 LPXNO60711 386 aa15.13■□□□□ 0.01
SS18-219ENST00000581570 GNAT2P19087 354 aa15.13■□□□□ 0.01
SS18-219ENST00000581570 PDE4BQ07343 736 aa15.13■□□□□ 0.01
SS18-219ENST00000581570 KCTD1Q719H9 257 aa15.13■□□□□ 0.01
SS18-219ENST00000581570 ALYREFQ86V81 257 aaKnown RBP15.13■□□□□ 0.01
SS18-219ENST00000581570 OR6J1Q8NGC5 347 aa15.13■□□□□ 0.01
SS18-219ENST00000581570 CD320Q9NPF0 282 aa15.13■□□□□ 0.01
SS18-219ENST00000581570 LMCD1Q9NZU5 365 aa15.13■□□□□ 0.01
SS18-219ENST00000581570 ADD3Q9UEY8 706 aaKnown RBP15.13■□□□□ 0.01
SS18-219ENST00000581570 CCPG1Q9ULG6 757 aa15.13■□□□□ 0.01
SS18-219ENST00000581570 PATL2C9JE40 543 aaKnown RBP15.12■□□□□ 0.01
SS18-219ENST00000581570 BAIAP3O94812 1187 aa15.12■□□□□ 0.01
SS18-219ENST00000581570 KCNJ6P48051 423 aa15.12■□□□□ 0.01
SS18-219ENST00000581570 BFSP2Q13515 415 aa15.12■□□□□ 0.01
SS18-219ENST00000581570 BRDTQ58F21 947 aaPredicted RBP15.12■□□□□ 0.01
SS18-219ENST00000581570 RCSD1Q6JBY9 416 aa15.12■□□□□ 0.01
SS18-219ENST00000581570 NFRKBQ6P4R8 1299 aa15.12■□□□□ 0.01
SS18-219ENST00000581570 SPRED2Q7Z698 418 aa15.12■□□□□ 0.01
SS18-219ENST00000581570 IFNL3Q8IZI9 196 aa15.12■□□□□ 0.01
SS18-219ENST00000581570 KBTBD3Q8NAB2 608 aa15.12■□□□□ 0.01
SS18-219ENST00000581570 PPP1R13LQ8WUF5 828 aa15.12■□□□□ 0.01
SS18-219ENST00000581570 PRR12Q9ULL5 1215 aa15.12■□□□□ 0.01
SS18-219ENST00000581570 PLIN4Q96Q06 1357 aa15.11■□□□□ 0.01
SS18-219ENST00000581570 RBM47A0AV96 593 aaKnown RBP15.11■□□□□ 0.01
SS18-219ENST00000581570 RNF113AO15541 343 aaKnown RBP15.11■□□□□ 0.01
SS18-219ENST00000581570 KPNA6O60684 536 aa15.11■□□□□ 0.01
SS18-219ENST00000581570 MS4A1P11836 297 aa15.11■□□□□ 0.01
SS18-219ENST00000581570 ALDH5A1P51649 535 aaPredicted RBP15.11■□□□□ 0.01
SS18-219ENST00000581570 PTPN11Q06124 597 aaPredicted RBP15.11■□□□□ 0.01
SS18-219ENST00000581570 BAATQ14032 418 aaPredicted RBP15.11■□□□□ 0.01
SS18-219ENST00000581570 ZBED2Q9BTP6 218 aa15.11■□□□□ 0.01
SS18-219ENST00000581570 ZBTB40Q9NUA8 1239 aa15.11■□□□□ 0.01
SS18-219ENST00000581570 NOD1Q9Y239 953 aa15.11■□□□□ 0.01
SS18-219ENST00000581570 LRRC37A2A6NM11 1700 aa15.11■□□□□ 0.01
SS18-219ENST00000581570 LOC102724159A0A0B4J2E5 919 aa15.1■□□□□ 0.01
SS18-219ENST00000581570 LCHNA4D1U4 455 aa15.1■□□□□ 0.01
SS18-219ENST00000581570 SMARCA5O60264 1052 aaPredicted RBP15.1■□□□□ 0.01
SS18-219ENST00000581570 SLC3A2P08195 630 aaKnown RBP15.1■□□□□ 0.01
SS18-219ENST00000581570 PWP2Q15269 919 aaKnown RBP15.1■□□□□ 0.01
SS18-219ENST00000581570 PPP4R3BQ5MIZ7 849 aa15.1■□□□□ 0.01
SS18-219ENST00000581570 GDPD5Q8WTR4 605 aa15.1■□□□□ 0.01
SS18-219ENST00000581570 NACAP1Q9BZK3 213 aa15.1■□□□□ 0.01
SS18-219ENST00000581570 LRRCC1Q9C099 1032 aa15.1■□□□□ 0.01
SS18-219ENST00000581570 ECHDC1Q9NTX5 307 aa15.1■□□□□ 0.01
SS18-219ENST00000581570 STX8Q9UNK0 236 aa15.1■□□□□ 0.01
SS18-219ENST00000581570 RAD50Q92878 1312 aa15.1■□□□□ 0.01
SS18-219ENST00000581570 PRR33A8MZF0 331 aa15.09■□□□□ 0.01
SS18-219ENST00000581570 M0R2C6 588 aa15.09■□□□□ 0.01
SS18-219ENST00000581570 NKRFO15226 690 aaKnown RBP eCLIP15.09■□□□□ 0.01
SS18-219ENST00000581570 ICAM1P05362 532 aa15.09■□□□□ 0.01
SS18-219ENST00000581570 ZFYP08048 801 aaPredicted RBP15.09■□□□□ 0.01
SS18-219ENST00000581570 LRRFIP1Q32MZ4 808 aaKnown RBP15.09■□□□□ 0.01
SS18-219ENST00000581570 GJD3Q8N144 294 aa15.09■□□□□ 0.01
SS18-219ENST00000581570 UBE2ZQ9H832 354 aaPredicted RBP15.09■□□□□ 0.01
SS18-219ENST00000581570 DDX19BQ9UMR2 479 aa15.09■□□□□ 0.01
SS18-219ENST00000581570 MTMR7Q9Y216 660 aa15.09■□□□□ 0.01
SS18-219ENST00000581570 MYH4Q9Y623 1939 aa15.09■□□□□ 0.01
SS18-219ENST00000581570 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP15.08■□□□□ 0
SS18-219ENST00000581570 PTPDC1A2A3K4 754 aa15.08■□□□□ 0
SS18-219ENST00000581570 A6NJR5 290 aa15.08■□□□□ 0
SS18-219ENST00000581570 NFIBO00712 420 aa15.08■□□□□ 0
SS18-219ENST00000581570 CHMP4BP1P59074 171 aa15.08■□□□□ 0
SS18-219ENST00000581570 WDR5P61964 334 aaKnown RBP15.08■□□□□ 0
SS18-219ENST00000581570 PPARAQ07869 468 aa15.08■□□□□ 0
SS18-219ENST00000581570 PPP2R5BQ15173 497 aa15.08■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms