RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 IRF2BP1Q8IU81 584 aa8.14□□□□□ -1.11
NUP88-213ENST00000576862 DIRC2Q96SL1 478 aa8.14□□□□□ -1.11
NUP88-213ENST00000576862 LNPKQ9C0E8 428 aa8.14□□□□□ -1.11
NUP88-213ENST00000576862 FBLN5Q9UBX5 448 aa8.14□□□□□ -1.11
NUP88-213ENST00000576862 FGFR1P11362 822 aa8.13□□□□□ -1.11
NUP88-213ENST00000576862 ERVFRD-1P60508 538 aa8.13□□□□□ -1.11
NUP88-213ENST00000576862 SSRP1Q08945 709 aaKnown RBP8.13□□□□□ -1.11
NUP88-213ENST00000576862 MAP4K2Q12851 820 aa8.13□□□□□ -1.11
NUP88-213ENST00000576862 TESK1Q15569 626 aa8.13□□□□□ -1.11
NUP88-213ENST00000576862 ADGRF1Q5T601 910 aa8.13□□□□□ -1.11
NUP88-213ENST00000576862 OSBP2Q969R2 916 aa8.13□□□□□ -1.11
NUP88-213ENST00000576862 DNAJC7Q99615 494 aa8.13□□□□□ -1.11
NUP88-213ENST00000576862 NSUN3Q9H649 340 aaKnown RBP8.13□□□□□ -1.11
NUP88-213ENST00000576862 TNFRSF12AQ9NP84 129 aa8.13□□□□□ -1.11
NUP88-213ENST00000576862 MESP2Q0VG99 397 aa8.12□□□□□ -1.11
NUP88-213ENST00000576862 ACBD5Q5T8D3 534 aaPredicted RBP8.12□□□□□ -1.11
NUP88-213ENST00000576862 E4F1Q66K89 784 aaPredicted RBP8.12□□□□□ -1.11
NUP88-213ENST00000576862 DPF3Q92784 378 aa8.12□□□□□ -1.11
NUP88-213ENST00000576862 PDLIM7Q9NR12 457 aa8.12□□□□□ -1.11
NUP88-213ENST00000576862 GULP1Q9UBP9 304 aa8.12□□□□□ -1.11
NUP88-213ENST00000576862 CDK11AQ9UQ88 783 aaPredicted RBP8.12□□□□□ -1.11
NUP88-213ENST00000576862 KDM2BQ8NHM5 1336 aa8.11□□□□□ -1.11
NUP88-213ENST00000576862 TRAV20A0A0B4J274 112 aa8.11□□□□□ -1.11
NUP88-213ENST00000576862 A0A1W2PQ27 194 aa8.11□□□□□ -1.11
NUP88-213ENST00000576862 A0A1W2PQ64 194 aa8.11□□□□□ -1.11
NUP88-213ENST00000576862 A0A1W2PQC6 194 aa8.11□□□□□ -1.11
NUP88-213ENST00000576862 A0A1W2PQD8 194 aa8.11□□□□□ -1.11
NUP88-213ENST00000576862 PRODHO43272 600 aa8.11□□□□□ -1.11
NUP88-213ENST00000576862 FAM153BP0C7A2 387 aa8.11□□□□□ -1.11
NUP88-213ENST00000576862 PABPC1P11940 636 aaKnown RBP8.11□□□□□ -1.11
NUP88-213ENST00000576862 TACR1P25103 407 aa8.11□□□□□ -1.11
NUP88-213ENST00000576862 PDE6BP35913 854 aa8.11□□□□□ -1.11
NUP88-213ENST00000576862 CCDC144BQ3MJ40 725 aa8.11□□□□□ -1.11
NUP88-213ENST00000576862 FOXB2Q5VYV0 432 aa8.11□□□□□ -1.11
NUP88-213ENST00000576862 PPIL6Q8IXY8 311 aa8.11□□□□□ -1.11
NUP88-213ENST00000576862 KCTD13Q8WZ19 329 aa8.11□□□□□ -1.11
NUP88-213ENST00000576862 MTA3Q9BTC8 594 aa8.11□□□□□ -1.11
NUP88-213ENST00000576862 ZNF552Q9H707 407 aaPredicted RBP8.11□□□□□ -1.11
NUP88-213ENST00000576862 RWDD3Q9Y3V2 267 aa8.11□□□□□ -1.11
NUP88-213ENST00000576862 OR14I1A6ND48 311 aa8.1□□□□□ -1.11
NUP88-213ENST00000576862 MEFVO15553 781 aaPredicted RBP8.1□□□□□ -1.11
NUP88-213ENST00000576862 NPHS1O60500 1241 aa8.1□□□□□ -1.11
NUP88-213ENST00000576862 ARL4AP40617 200 aa8.1□□□□□ -1.11
NUP88-213ENST00000576862 IFRD2Q12894 506 aaPredicted RBP8.1□□□□□ -1.11
NUP88-213ENST00000576862 BMS1Q14692 1282 aaKnown RBP8.1□□□□□ -1.11
NUP88-213ENST00000576862 IQCEQ6IPM2 695 aa8.1□□□□□ -1.11
NUP88-213ENST00000576862 ZBTB38Q8NAP3 1195 aaPredicted RBP8.1□□□□□ -1.11
NUP88-213ENST00000576862 DIO2Q92813 273 aa8.1□□□□□ -1.11
NUP88-213ENST00000576862 KRTAP4-8Q9BYQ9 185 aa8.1□□□□□ -1.11
NUP88-213ENST00000576862 NPFFR2Q9Y5X5 522 aa8.1□□□□□ -1.11
NUP88-213ENST00000576862 LCP1P13796 627 aa8.09□□□□□ -1.11
NUP88-213ENST00000576862 NTRK3Q16288 839 aa8.09□□□□□ -1.11
NUP88-213ENST00000576862 NSMFQ6X4W1 530 aa8.09□□□□□ -1.11
NUP88-213ENST00000576862 ZNF605Q86T29 641 aa8.09□□□□□ -1.11
NUP88-213ENST00000576862 POU5F2Q8N7G0 328 aa8.09□□□□□ -1.11
NUP88-213ENST00000576862 JMYQ8N9B5 988 aa8.09□□□□□ -1.11
NUP88-213ENST00000576862 RCBTB1Q8NDN9 531 aa8.09□□□□□ -1.11
NUP88-213ENST00000576862 EPB41L4BQ9H329 900 aa8.09□□□□□ -1.11
NUP88-213ENST00000576862 ZSWIM4Q9H7M6 989 aa8.09□□□□□ -1.11
NUP88-213ENST00000576862 DCP1AQ9NPI6 582 aaPredicted RBP8.09□□□□□ -1.11
NUP88-213ENST00000576862 KLHL14Q9P2G3 628 aa8.09□□□□□ -1.11
NUP88-213ENST00000576862 FBXL7Q9UJT9 491 aa8.09□□□□□ -1.11
NUP88-213ENST00000576862 MYOCOSA0A1B0GUC4 107 aa8.08□□□□□ -1.12
NUP88-213ENST00000576862 DBHP09172 617 aa8.08□□□□□ -1.12
NUP88-213ENST00000576862 GLI4P10075 376 aa8.08□□□□□ -1.12
NUP88-213ENST00000576862 LTBRP36941 435 aa8.08□□□□□ -1.12
NUP88-213ENST00000576862 YBX1P67809 324 aaKnown RBP8.08□□□□□ -1.12
NUP88-213ENST00000576862 KCNAB2Q13303 367 aa8.08□□□□□ -1.12
NUP88-213ENST00000576862 DPH6Q7L8W6 267 aa8.08□□□□□ -1.12
NUP88-213ENST00000576862 LILRB2Q8N423 598 aa8.08□□□□□ -1.12
NUP88-213ENST00000576862 LZTR1Q8N653 840 aa8.08□□□□□ -1.12
NUP88-213ENST00000576862 PIF1Q9H611 641 aa8.08□□□□□ -1.12
NUP88-213ENST00000576862 BLACEA4D250 179 aa8.07□□□□□ -1.12
NUP88-213ENST00000576862 SRGAP3O43295 1099 aa8.07□□□□□ -1.12
NUP88-213ENST00000576862 MPOP05164 745 aa8.07□□□□□ -1.12
NUP88-213ENST00000576862 CBX2Q14781 532 aaPredicted RBP8.07□□□□□ -1.12
NUP88-213ENST00000576862 NFE2L2Q16236 605 aa8.07□□□□□ -1.12
NUP88-213ENST00000576862 FAM209AQ5JX71 171 aa8.07□□□□□ -1.12
NUP88-213ENST00000576862 ZNF648Q5T619 568 aaPredicted RBP8.07□□□□□ -1.12
NUP88-213ENST00000576862 BICRALQ6AI39 1079 aa8.07□□□□□ -1.12
NUP88-213ENST00000576862 RPTNQ6XPR3 784 aa8.07□□□□□ -1.12
NUP88-213ENST00000576862 PLEKHO2Q8TD55 490 aa8.07□□□□□ -1.12
NUP88-213ENST00000576862 EXOC2Q96KP1 924 aa8.07□□□□□ -1.12
NUP88-213ENST00000576862 MCOLN1Q9GZU1 580 aa8.07□□□□□ -1.12
NUP88-213ENST00000576862 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP8.07□□□□□ -1.12
NUP88-213ENST00000576862 NUDT19A8MXV4 375 aa8.06□□□□□ -1.12
NUP88-213ENST00000576862 HRKO00198 91 aa8.06□□□□□ -1.12
NUP88-213ENST00000576862 MSCO60682 206 aa8.06□□□□□ -1.12
NUP88-213ENST00000576862 FARP2O94887 1054 aaPredicted RBP8.06□□□□□ -1.12
NUP88-213ENST00000576862 FUCA1P04066 466 aa8.06□□□□□ -1.12
NUP88-213ENST00000576862 LONRF2Q1L5Z9 754 aa8.06□□□□□ -1.12
NUP88-213ENST00000576862 USP53Q70EK8 1073 aa8.06□□□□□ -1.12
NUP88-213ENST00000576862 NLRP10Q86W26 655 aa8.06□□□□□ -1.12
NUP88-213ENST00000576862 FBXO15Q8NCQ5 510 aaPredicted RBP8.06□□□□□ -1.12
NUP88-213ENST00000576862 TIMM13Q9Y5L4 95 aaPredicted RBP8.06□□□□□ -1.12
NUP88-213ENST00000576862 TRBV23-1A0A0A0MS06 115 aa8.05□□□□□ -1.12
NUP88-213ENST00000576862 A0A1W2PQJ5 194 aa8.05□□□□□ -1.12
NUP88-213ENST00000576862 PEX10O60683 326 aa8.05□□□□□ -1.12
NUP88-213ENST00000576862 CYBBP04839 570 aa8.05□□□□□ -1.12
NUP88-213ENST00000576862 VIPR1P32241 457 aa8.05□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms