RNA–Protein interactions for RNA: ENST00000573936.5

CHD3-216, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 749 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-216ENST00000573936 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.76□□□□□ -0.37
CHD3-216ENST00000573936 PRO3102Q9H379 93 aa12.76□□□□□ -0.37
CHD3-216ENST00000573936 MAP3K20Q9NYL2 800 aaKnown RBP12.76□□□□□ -0.37
CHD3-216ENST00000573936 CYP39A1Q9NYL5 469 aa12.76□□□□□ -0.37
CHD3-216ENST00000573936 PCDHA1Q9Y5I3 950 aa12.76□□□□□ -0.37
CHD3-216ENST00000573936 LOC102724159A0A0B4J2E5 919 aa12.75□□□□□ -0.37
CHD3-216ENST00000573936 PTPDC1A2A3K4 754 aa12.75□□□□□ -0.37
CHD3-216ENST00000573936 PDIA3P30101 505 aaKnown RBP12.75□□□□□ -0.37
CHD3-216ENST00000573936 NEK4P51957 841 aa12.75□□□□□ -0.37
CHD3-216ENST00000573936 NID2Q14112 1375 aa12.75□□□□□ -0.37
CHD3-216ENST00000573936 PWP2Q15269 919 aaKnown RBP12.75□□□□□ -0.37
CHD3-216ENST00000573936 CCL14Q16627 93 aa12.75□□□□□ -0.37
CHD3-216ENST00000573936 SLC35G1Q2M3R5 365 aa12.75□□□□□ -0.37
CHD3-216ENST00000573936 RNF207Q6ZRF8 634 aa12.75□□□□□ -0.37
CHD3-216ENST00000573936 RPTORQ8N122 1335 aa12.75□□□□□ -0.37
CHD3-216ENST00000573936 DIS3LQ8TF46 1054 aaKnown RBP12.75□□□□□ -0.37
CHD3-216ENST00000573936 CLEC4DQ8WXI8 215 aa12.75□□□□□ -0.37
CHD3-216ENST00000573936 LRCH3Q96II8 777 aa12.75□□□□□ -0.37
CHD3-216ENST00000573936 BACH2Q9BYV9 841 aa12.75□□□□□ -0.37
CHD3-216ENST00000573936 HMX1Q9NP08 348 aaPredicted RBP12.75□□□□□ -0.37
CHD3-216ENST00000573936 NRBP1Q9UHY1 535 aa12.75□□□□□ -0.37
CHD3-216ENST00000573936 SYNGAP1Q96PV0 1343 aa12.74□□□□□ -0.37
CHD3-216ENST00000573936 ASB14A6NK59 587 aa12.74□□□□□ -0.37
CHD3-216ENST00000573936 B4DLN1 442 aa12.74□□□□□ -0.37
CHD3-216ENST00000573936 NFIBO00712 420 aa12.74□□□□□ -0.37
CHD3-216ENST00000573936 CDC27P30260 824 aa12.74□□□□□ -0.37
CHD3-216ENST00000573936 ADD1P35611 737 aaKnown RBP12.74□□□□□ -0.37
CHD3-216ENST00000573936 MRPL12P52815 198 aaKnown RBP12.74□□□□□ -0.37
CHD3-216ENST00000573936 CACNB2Q08289 660 aaPredicted RBP12.74□□□□□ -0.37
CHD3-216ENST00000573936 TRIM32Q13049 653 aa12.74□□□□□ -0.37
CHD3-216ENST00000573936 BAATQ14032 418 aaPredicted RBP12.74□□□□□ -0.37
CHD3-216ENST00000573936 MAP3K21Q5TCX8 1036 aa12.74□□□□□ -0.37
CHD3-216ENST00000573936 CPLX2Q6PUV4 134 aaKnown RBP12.74□□□□□ -0.37
CHD3-216ENST00000573936 MAMDC4Q6UXC1 1216 aa12.74□□□□□ -0.37
CHD3-216ENST00000573936 CCDC82Q8N4S0 544 aa12.74□□□□□ -0.37
CHD3-216ENST00000573936 FAM133AQ8N9E0 248 aa12.74□□□□□ -0.37
CHD3-216ENST00000573936 PIBF1Q8WXW3 757 aa12.74□□□□□ -0.37
CHD3-216ENST00000573936 MPHOSPH6Q99547 160 aaKnown RBP12.74□□□□□ -0.37
CHD3-216ENST00000573936 TINF2Q9BSI4 451 aa12.74□□□□□ -0.37
CHD3-216ENST00000573936 FAM217BQ9NTX9 383 aaPredicted RBP12.74□□□□□ -0.37
CHD3-216ENST00000573936 FLRT1Q9NZU1 646 aa12.74□□□□□ -0.37
CHD3-216ENST00000573936 ADD3Q9UEY8 706 aaKnown RBP12.74□□□□□ -0.37
CHD3-216ENST00000573936 hCG_1984214I3L0E3 225 aa12.73□□□□□ -0.37
CHD3-216ENST00000573936 SOX1O00570 391 aaPredicted RBP12.73□□□□□ -0.37
CHD3-216ENST00000573936 PPP1R11O60927 126 aaPredicted RBP12.73□□□□□ -0.37
CHD3-216ENST00000573936 IGHA2P01877 340 aa12.73□□□□□ -0.37
CHD3-216ENST00000573936 PRKAR2AP13861 404 aaKnown RBP12.73□□□□□ -0.37
CHD3-216ENST00000573936 AK2P54819 239 aa12.73□□□□□ -0.37
CHD3-216ENST00000573936 RPS6P62753 249 aaKnown RBP12.73□□□□□ -0.37
CHD3-216ENST00000573936 AKAP17AQ02040 695 aaKnown RBP12.73□□□□□ -0.37
CHD3-216ENST00000573936 C7orf61Q8IZ16 206 aa12.73□□□□□ -0.37
CHD3-216ENST00000573936 CMTR1Q8N1G2 835 aaKnown RBP12.73□□□□□ -0.37
CHD3-216ENST00000573936 ZNF713Q8N859 430 aaPredicted RBP12.73□□□□□ -0.37
CHD3-216ENST00000573936 ANKLE1Q8NAG6 615 aa12.73□□□□□ -0.37
CHD3-216ENST00000573936 DNERQ8NFT8 737 aa12.73□□□□□ -0.37
CHD3-216ENST00000573936 CRISPLD2Q9H0B8 497 aa12.73□□□□□ -0.37
CHD3-216ENST00000573936 CNPY2Q9Y2B0 182 aa12.73□□□□□ -0.37
CHD3-216ENST00000573936 CNTNAP5Q8WYK1 1306 aa12.72□□□□□ -0.37
CHD3-216ENST00000573936 CPLX1O14810 134 aa12.72□□□□□ -0.37
CHD3-216ENST00000573936 PRPF3O43395 683 aaKnown RBP12.72□□□□□ -0.37
CHD3-216ENST00000573936 IFNAR1P17181 557 aa12.72□□□□□ -0.37
CHD3-216ENST00000573936 TAL1P17542 331 aaPredicted RBP12.72□□□□□ -0.37
CHD3-216ENST00000573936 CALML3P27482 149 aa12.72□□□□□ -0.37
CHD3-216ENST00000573936 CYP2C19P33261 490 aa12.72□□□□□ -0.37
CHD3-216ENST00000573936 BMP8BP34820 402 aa12.72□□□□□ -0.37
CHD3-216ENST00000573936 MNX1P50219 401 aaPredicted RBP12.72□□□□□ -0.37
CHD3-216ENST00000573936 CCT2P78371 535 aaKnown RBP12.72□□□□□ -0.37
CHD3-216ENST00000573936 CNTN2Q02246 1040 aa12.72□□□□□ -0.37
CHD3-216ENST00000573936 FUT2Q10981 343 aa12.72□□□□□ -0.37
CHD3-216ENST00000573936 RABEP1Q15276 862 aa12.72□□□□□ -0.37
CHD3-216ENST00000573936 GPR153Q6NV75 609 aa12.72□□□□□ -0.37
CHD3-216ENST00000573936 TEX2Q8IWB9 1127 aa12.72□□□□□ -0.37
CHD3-216ENST00000573936 DEFB123Q8N688 67 aa12.72□□□□□ -0.37
CHD3-216ENST00000573936 CUL5Q93034 780 aa12.72□□□□□ -0.37
CHD3-216ENST00000573936 SLKQ9H2G2 1235 aaPredicted RBP12.72□□□□□ -0.37
CHD3-216ENST00000573936 V9GY48 417 aaPredicted RBP12.72□□□□□ -0.37
CHD3-216ENST00000573936 SOWAHBA6NEL2 793 aa12.71□□□□□ -0.37
CHD3-216ENST00000573936 GCOM1H8Y6P7 765 aaPredicted RBP12.71□□□□□ -0.37
CHD3-216ENST00000573936 MSCO60682 206 aa12.71□□□□□ -0.37
CHD3-216ENST00000573936 PFKFB2O60825 505 aa12.71□□□□□ -0.37
CHD3-216ENST00000573936 CDKL5O76039 1030 aa12.71□□□□□ -0.37
CHD3-216ENST00000573936 CFBP00751 764 aa12.71□□□□□ -0.37
CHD3-216ENST00000573936 POLR2MP0CAP2 368 aa12.71□□□□□ -0.37
CHD3-216ENST00000573936 HSD17B4P51659 736 aa12.71□□□□□ -0.37
CHD3-216ENST00000573936 GHRHRQ02643 423 aa12.71□□□□□ -0.37
CHD3-216ENST00000573936 SLC30A10Q6XR72 485 aa12.71□□□□□ -0.37
CHD3-216ENST00000573936 TRIM22Q8IYM9 498 aa12.71□□□□□ -0.37
CHD3-216ENST00000573936 TBC1D32Q96NH3 1257 aa12.71□□□□□ -0.37
CHD3-216ENST00000573936 LARP6Q9BRS8 491 aaKnown RBP12.71□□□□□ -0.37
CHD3-216ENST00000573936 RNF26Q9BY78 433 aaPredicted RBP12.71□□□□□ -0.37
CHD3-216ENST00000573936 GLT8D2Q9H1C3 349 aa12.71□□□□□ -0.37
CHD3-216ENST00000573936 TPCN1Q9ULQ1 816 aa12.71□□□□□ -0.37
CHD3-216ENST00000573936 ZMYND8Q9ULU4 1186 aaPredicted RBP12.71□□□□□ -0.37
CHD3-216ENST00000573936 CYBAP13498 195 aa12.7□□□□□ -0.38
CHD3-216ENST00000573936 CNGA1P29973 690 aa12.7□□□□□ -0.38
CHD3-216ENST00000573936 ALDH5A1P51649 535 aaPredicted RBP12.7□□□□□ -0.38
CHD3-216ENST00000573936 SSRP1Q08945 709 aaKnown RBP12.7□□□□□ -0.38
CHD3-216ENST00000573936 STK3Q13188 491 aa12.7□□□□□ -0.38
CHD3-216ENST00000573936 NTRK3Q16288 839 aa12.7□□□□□ -0.38
CHD3-216ENST00000573936 PPP1R18Q6NYC8 613 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms