RNA–Protein interactions for RNA: ENST00000571409.1

CTDNEP1-206, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

TSL 5

Gene CTDNEP1, Length 741 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-206ENST00000571409 MYH6P13533 1939 aa35.38■■■■□ 3.25
CTDNEP1-206ENST00000571409 PQBP1O60828 265 aaKnown RBP35.38■■■■□ 3.25
CTDNEP1-206ENST00000571409 NKX3-2P78367 333 aa35.38■■■■□ 3.25
CTDNEP1-206ENST00000571409 BEX3Q00994 111 aa35.38■■■■□ 3.25
CTDNEP1-206ENST00000571409 ESYT1Q9BSJ8 1104 aa35.38■■■■□ 3.25
CTDNEP1-206ENST00000571409 MAD2L2Q9UI95 211 aa35.38■■■■□ 3.25
CTDNEP1-206ENST00000571409 TRIM43BA6NCK2 446 aa35.37■■■■□ 3.25
CTDNEP1-206ENST00000571409 KLRF2D3W0D1 207 aa35.37■■■■□ 3.25
CTDNEP1-206ENST00000571409 SART3Q15020 963 aaKnown RBP35.37■■■■□ 3.25
CTDNEP1-206ENST00000571409 CHST3Q7LGC8 479 aa35.37■■■■□ 3.25
CTDNEP1-206ENST00000571409 RGS22Q8NE09 1264 aa35.37■■■■□ 3.25
CTDNEP1-206ENST00000571409 TRIM43Q96BQ3 446 aaPredicted RBP35.37■■■■□ 3.25
CTDNEP1-206ENST00000571409 LRCH3Q96II8 777 aa35.37■■■■□ 3.25
CTDNEP1-206ENST00000571409 LSG1Q9H089 658 aaKnown RBP35.37■■■■□ 3.25
CTDNEP1-206ENST00000571409 ELP1O95163 1332 aa35.36■■■■□ 3.25
CTDNEP1-206ENST00000571409 CLTBP09497 229 aa35.36■■■■□ 3.25
CTDNEP1-206ENST00000571409 PTGS1P23219 599 aa35.36■■■■□ 3.25
CTDNEP1-206ENST00000571409 WTAPQ15007 396 aa35.36■■■■□ 3.25
CTDNEP1-206ENST00000571409 FBXO11Q86XK2 927 aa35.36■■■■□ 3.25
CTDNEP1-206ENST00000571409 DNERQ8NFT8 737 aa35.36■■■■□ 3.25
CTDNEP1-206ENST00000571409 VTI1AQ96AJ9 217 aa35.36■■■■□ 3.25
CTDNEP1-206ENST00000571409 AP5M1Q9H0R1 490 aa35.36■■■■□ 3.25
CTDNEP1-206ENST00000571409 SENP2Q9HC62 589 aa35.36■■■■□ 3.25
CTDNEP1-206ENST00000571409 BMP2KLQ5H9B9 411 aa35.35■■■■□ 3.25
CTDNEP1-206ENST00000571409 TMEM63BQ5T3F8 832 aa35.35■■■■□ 3.25
CTDNEP1-206ENST00000571409 MPHOSPH6Q99547 160 aaKnown RBP35.35■■■■□ 3.25
CTDNEP1-206ENST00000571409 PALM3A6NDB9 673 aaPredicted RBP35.34■■■■□ 3.25
CTDNEP1-206ENST00000571409 DYNC1LI2O43237 492 aaPredicted RBP35.34■■■■□ 3.25
CTDNEP1-206ENST00000571409 ANTXR2P58335 489 aa35.34■■■■□ 3.25
CTDNEP1-206ENST00000571409 PDE4DQ08499 809 aa35.34■■■■□ 3.25
CTDNEP1-206ENST00000571409 LRIT3Q3SXY7 679 aa35.34■■■■□ 3.25
CTDNEP1-206ENST00000571409 ANKRD33Q7Z3H0 272 aa35.34■■■■□ 3.25
CTDNEP1-206ENST00000571409 MB21D2Q8IYB1 491 aaPredicted RBP35.34■■■■□ 3.25
CTDNEP1-206ENST00000571409 TBC1D5Q92609 795 aa35.34■■■■□ 3.25
CTDNEP1-206ENST00000571409 BADQ92934 168 aa35.34■■■■□ 3.25
CTDNEP1-206ENST00000571409 GRM4Q14833 912 aa35.33■■■■□ 3.25
CTDNEP1-206ENST00000571409 FSCN1Q16658 493 aaKnown RBP35.33■■■■□ 3.25
CTDNEP1-206ENST00000571409 TMEM67Q5HYA8 995 aa35.33■■■■□ 3.25
CTDNEP1-206ENST00000571409 TOX2Q96NM4 488 aa35.33■■■■□ 3.25
CTDNEP1-206ENST00000571409 MAF1Q9H063 256 aa35.33■■■■□ 3.25
CTDNEP1-206ENST00000571409 MRPL11Q9Y3B7 192 aaKnown RBP35.33■■■■□ 3.25
CTDNEP1-206ENST00000571409 Q9Y3F1 56 aa35.33■■■■□ 3.25
CTDNEP1-206ENST00000571409 DCDC2CA8MYV0 355 aa35.32■■■■□ 3.24
CTDNEP1-206ENST00000571409 EDNRBP24530 442 aa35.32■■■■□ 3.24
CTDNEP1-206ENST00000571409 DUSP28Q4G0W2 176 aa35.32■■■■□ 3.24
CTDNEP1-206ENST00000571409 WDR11Q9BZH6 1224 aa35.32■■■■□ 3.24
CTDNEP1-206ENST00000571409 A0A0U1RQG5 324 aaPredicted RBP35.31■■■■□ 3.24
CTDNEP1-206ENST00000571409 FAAP100Q0VG06 881 aa35.31■■■■□ 3.24
CTDNEP1-206ENST00000571409 MCF2L2Q86YR7 1114 aa35.31■■■■□ 3.24
CTDNEP1-206ENST00000571409 AMNQ9BXJ7 453 aa35.31■■■■□ 3.24
CTDNEP1-206ENST00000571409 MROH7Q68CQ1 1323 aa35.31■■■■□ 3.24
CTDNEP1-206ENST00000571409 SZT2Q5T011 3432 aa35.3■■■■□ 3.24
CTDNEP1-206ENST00000571409 B4DLN1 442 aa35.3■■■■□ 3.24
CTDNEP1-206ENST00000571409 MRPL12P52815 198 aaKnown RBP35.3■■■■□ 3.24
CTDNEP1-206ENST00000571409 IGDCC4Q8TDY8 1250 aa35.3■■■■□ 3.24
CTDNEP1-206ENST00000571409 MTMR8Q96EF0 704 aa35.3■■■■□ 3.24
CTDNEP1-206ENST00000571409 ANO2Q9NQ90 1003 aa35.3■■■■□ 3.24
CTDNEP1-206ENST00000571409 TMEM39AQ9NV64 488 aa35.3■■■■□ 3.24
CTDNEP1-206ENST00000571409 RBM47A0AV96 593 aaKnown RBP35.29■■■■□ 3.24
CTDNEP1-206ENST00000571409 KIAA0355O15063 1070 aa35.29■■■■□ 3.24
CTDNEP1-206ENST00000571409 ZEB2O60315 1214 aa35.29■■■■□ 3.24
CTDNEP1-206ENST00000571409 ITGB8P26012 769 aa35.29■■■■□ 3.24
CTDNEP1-206ENST00000571409 CDK7P50613 346 aa35.29■■■■□ 3.24
CTDNEP1-206ENST00000571409 TROAPQ12815 778 aa35.29■■■■□ 3.24
CTDNEP1-206ENST00000571409 CXCL17Q6UXB2 119 aa35.29■■■■□ 3.24
CTDNEP1-206ENST00000571409 SYTL5Q8TDW5 730 aaPredicted RBP35.29■■■■□ 3.24
CTDNEP1-206ENST00000571409 ARVCFO00192 962 aa35.28■■■■□ 3.24
CTDNEP1-206ENST00000571409 SLC27A2O14975 620 aa35.28■■■■□ 3.24
CTDNEP1-206ENST00000571409 ZBTB5O15062 677 aa35.28■■■■□ 3.24
CTDNEP1-206ENST00000571409 RAG1P15918 1043 aa35.28■■■■□ 3.24
CTDNEP1-206ENST00000571409 CATIPQ7Z7H3 387 aa35.28■■■■□ 3.24
CTDNEP1-206ENST00000571409 TAAR1Q96RJ0 339 aa35.28■■■■□ 3.24
CTDNEP1-206ENST00000571409 COL20A1Q9P218 1284 aa35.28■■■■□ 3.24
CTDNEP1-206ENST00000571409 LAMA3Q16787 3333 aa35.27■■■■□ 3.24
CTDNEP1-206ENST00000571409 CABYRO75952 493 aa35.27■■■■□ 3.24
CTDNEP1-206ENST00000571409 SLC35G1Q2M3R5 365 aa35.27■■■■□ 3.24
CTDNEP1-206ENST00000571409 PPP1R11O60927 126 aaPredicted RBP35.26■■■■□ 3.24
CTDNEP1-206ENST00000571409 CREB3L3Q68CJ9 461 aa35.26■■■■□ 3.24
CTDNEP1-206ENST00000571409 CASC1Q6TDU7 716 aa35.26■■■■□ 3.24
CTDNEP1-206ENST00000571409 HOMER1Q86YM7 354 aa35.26■■■■□ 3.24
CTDNEP1-206ENST00000571409 RIOX1Q9H6W3 641 aa35.26■■■■□ 3.24
CTDNEP1-206ENST00000571409 PRC1O43663 620 aa35.25■■■■□ 3.23
CTDNEP1-206ENST00000571409 CFBP00751 764 aa35.25■■■■□ 3.23
CTDNEP1-206ENST00000571409 PPP2R5BQ15173 497 aa35.25■■■■□ 3.23
CTDNEP1-206ENST00000571409 NECTIN1Q15223 517 aa35.25■■■■□ 3.23
CTDNEP1-206ENST00000571409 NSUN6Q8TEA1 469 aaKnown RBP35.25■■■■□ 3.23
CTDNEP1-206ENST00000571409 SCFD2Q8WU76 684 aa35.25■■■■□ 3.23
CTDNEP1-206ENST00000571409 PIGSQ96S52 555 aa35.25■■■■□ 3.23
CTDNEP1-206ENST00000571409 LY9Q9HBG7 655 aa35.25■■■■□ 3.23
CTDNEP1-206ENST00000571409 PCDHA1Q9Y5I3 950 aa35.25■■■■□ 3.23
CTDNEP1-206ENST00000571409 OR6J1Q8NGC5 347 aa35.24■■■■□ 3.23
CTDNEP1-206ENST00000571409 CCDC136Q96JN2 1154 aa35.24■■■■□ 3.23
CTDNEP1-206ENST00000571409 RMDN3Q96TC7 470 aa35.24■■■■□ 3.23
CTDNEP1-206ENST00000571409 MTA3Q9BTC8 594 aa35.24■■■■□ 3.23
CTDNEP1-206ENST00000571409 GPHNQ9NQX3 736 aaPredicted RBP35.24■■■■□ 3.23
CTDNEP1-206ENST00000571409 OPLAHO14841 1288 aa35.23■■■■□ 3.23
CTDNEP1-206ENST00000571409 CYTH3O43739 400 aa35.23■■■■□ 3.23
CTDNEP1-206ENST00000571409 MCM5P33992 734 aa35.23■■■■□ 3.23
CTDNEP1-206ENST00000571409 TBX21Q9UL17 535 aa35.23■■■■□ 3.23
CTDNEP1-206ENST00000571409 NKRFO15226 690 aaKnown RBP eCLIP35.22■■■■□ 3.23
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms