RNA–Protein interactions for RNA: ENST00000569916.1

CNOT1-220, Transcript of CCR4-NOT transcription complex subunit 1, humanhuman

TSL 3

Gene CNOT1, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT1-220ENST00000569916 IRX5P78411 483 aaPredicted RBP15.15■□□□□ 0.02
CNOT1-220ENST00000569916 TAPT1Q6NXT6 567 aa15.15■□□□□ 0.02
CNOT1-220ENST00000569916 EEPD1Q7L9B9 569 aa15.15■□□□□ 0.02
CNOT1-220ENST00000569916 HOMER1Q86YM7 354 aa15.15■□□□□ 0.02
CNOT1-220ENST00000569916 KLHDC9Q8NEP7 349 aa15.15■□□□□ 0.02
CNOT1-220ENST00000569916 NUP133Q8WUM0 1156 aa15.15■□□□□ 0.02
CNOT1-220ENST00000569916 NEK1Q96PY6 1258 aa15.15■□□□□ 0.02
CNOT1-220ENST00000569916 PIGSQ96S52 555 aa15.15■□□□□ 0.02
CNOT1-220ENST00000569916 UPF3AQ9H1J1 476 aaKnown RBP15.15■□□□□ 0.02
CNOT1-220ENST00000569916 VTA1Q9NP79 307 aa15.15■□□□□ 0.02
CNOT1-220ENST00000569916 PDGFCQ9NRA1 345 aa15.15■□□□□ 0.02
CNOT1-220ENST00000569916 COL20A1Q9P218 1284 aa15.15■□□□□ 0.02
CNOT1-220ENST00000569916 MRPL11Q9Y3B7 192 aaKnown RBP15.15■□□□□ 0.02
CNOT1-220ENST00000569916 CCDC69A6NI79 296 aa15.14■□□□□ 0.01
CNOT1-220ENST00000569916 CST5P28325 142 aaPredicted RBP15.14■□□□□ 0.01
CNOT1-220ENST00000569916 GJA9P57773 515 aa15.14■□□□□ 0.01
CNOT1-220ENST00000569916 TNFAIP2Q03169 654 aa15.14■□□□□ 0.01
CNOT1-220ENST00000569916 SNX17Q15036 470 aa15.14■□□□□ 0.01
CNOT1-220ENST00000569916 CCSAPQ6IQ19 270 aaPredicted RBP15.14■□□□□ 0.01
CNOT1-220ENST00000569916 CHRDL2Q6WN34 429 aa15.14■□□□□ 0.01
CNOT1-220ENST00000569916 SLC39A5Q6ZMH5 540 aa15.14■□□□□ 0.01
CNOT1-220ENST00000569916 NFXL1Q6ZNB6 911 aa15.14■□□□□ 0.01
CNOT1-220ENST00000569916 SGMS1Q86VZ5 419 aa15.14■□□□□ 0.01
CNOT1-220ENST00000569916 TMTC2Q8N394 836 aa15.14■□□□□ 0.01
CNOT1-220ENST00000569916 DNERQ8NFT8 737 aa15.14■□□□□ 0.01
CNOT1-220ENST00000569916 CTCFLQ8NI51 663 aaPredicted RBP15.14■□□□□ 0.01
CNOT1-220ENST00000569916 KCNB2Q92953 911 aa15.14■□□□□ 0.01
CNOT1-220ENST00000569916 FERMT2Q96AC1 680 aa15.14■□□□□ 0.01
CNOT1-220ENST00000569916 SPZ1Q9BXG8 430 aa15.14■□□□□ 0.01
CNOT1-220ENST00000569916 ZMYND8Q9ULU4 1186 aaPredicted RBP15.14■□□□□ 0.01
CNOT1-220ENST00000569916 COLQQ9Y215 455 aaPredicted RBP15.14■□□□□ 0.01
CNOT1-220ENST00000569916 GNEQ9Y223 722 aaKnown RBP15.14■□□□□ 0.01
CNOT1-220ENST00000569916 DNAH12Q6ZR08 3092 aa15.14■□□□□ 0.01
CNOT1-220ENST00000569916 A0A1W2PQ45 241 aaPredicted RBP15.13■□□□□ 0.01
CNOT1-220ENST00000569916 A0A1W2PQY0 241 aa15.13■□□□□ 0.01
CNOT1-220ENST00000569916 CTAGE5O15320 804 aa15.13■□□□□ 0.01
CNOT1-220ENST00000569916 C6orf222P0C671 652 aaPredicted RBP15.13■□□□□ 0.01
CNOT1-220ENST00000569916 SMPD1P17405 629 aa15.13■□□□□ 0.01
CNOT1-220ENST00000569916 RXRAP19793 462 aa15.13■□□□□ 0.01
CNOT1-220ENST00000569916 KIF5BP33176 963 aa15.13■□□□□ 0.01
CNOT1-220ENST00000569916 HSPA4P34932 840 aa15.13■□□□□ 0.01
CNOT1-220ENST00000569916 RTP1P59025 263 aa15.13■□□□□ 0.01
CNOT1-220ENST00000569916 NKX3-2P78367 333 aa15.13■□□□□ 0.01
CNOT1-220ENST00000569916 EXOSC10Q01780 885 aaKnown RBP15.13■□□□□ 0.01
CNOT1-220ENST00000569916 GHRHRQ02643 423 aa15.13■□□□□ 0.01
CNOT1-220ENST00000569916 KRT32Q14532 448 aa15.13■□□□□ 0.01
CNOT1-220ENST00000569916 MCF2L2Q86YR7 1114 aa15.13■□□□□ 0.01
CNOT1-220ENST00000569916 SYTL5Q8TDW5 730 aaPredicted RBP15.13■□□□□ 0.01
CNOT1-220ENST00000569916 TCEANC2Q96MN5 208 aa15.13■□□□□ 0.01
CNOT1-220ENST00000569916 TSEN34Q9BSV6 310 aaKnown RBP15.13■□□□□ 0.01
CNOT1-220ENST00000569916 PRO3102Q9H379 93 aa15.13■□□□□ 0.01
CNOT1-220ENST00000569916 PCDHA1Q9Y5I3 950 aa15.13■□□□□ 0.01
CNOT1-220ENST00000569916 MOXD2PA6NHM9 499 aa15.12■□□□□ 0.01
CNOT1-220ENST00000569916 REC8O95072 547 aa15.12■□□□□ 0.01
CNOT1-220ENST00000569916 PLEKHA8P1O95397 391 aa15.12■□□□□ 0.01
CNOT1-220ENST00000569916 CALM1P0DP23 149 aa15.12■□□□□ 0.01
CNOT1-220ENST00000569916 CALM2P0DP24 149 aa15.12■□□□□ 0.01
CNOT1-220ENST00000569916 CALM3P0DP25 149 aa15.12■□□□□ 0.01
CNOT1-220ENST00000569916 SYN1P17600 705 aa15.12■□□□□ 0.01
CNOT1-220ENST00000569916 PTGS1P23219 599 aa15.12■□□□□ 0.01
CNOT1-220ENST00000569916 HSD17B4P51659 736 aa15.12■□□□□ 0.01
CNOT1-220ENST00000569916 ACLYP53396 1101 aa15.12■□□□□ 0.01
CNOT1-220ENST00000569916 HABP4Q5JVS0 413 aaKnown RBP15.12■□□□□ 0.01
CNOT1-220ENST00000569916 TMEM63BQ5T3F8 832 aa15.12■□□□□ 0.01
CNOT1-220ENST00000569916 C1orf53Q5VUE5 145 aa15.12■□□□□ 0.01
CNOT1-220ENST00000569916 DHX32Q7L7V1 743 aaKnown RBP15.12■□□□□ 0.01
CNOT1-220ENST00000569916 TLK2Q86UE8 772 aa15.12■□□□□ 0.01
CNOT1-220ENST00000569916 RAB11FIP4Q86YS3 637 aa15.12■□□□□ 0.01
CNOT1-220ENST00000569916 TAAR1Q96RJ0 339 aa15.12■□□□□ 0.01
CNOT1-220ENST00000569916 SPC25Q9HBM1 224 aa15.12■□□□□ 0.01
CNOT1-220ENST00000569916 PCDH10Q9P2E7 1040 aa15.12■□□□□ 0.01
CNOT1-220ENST00000569916 PNMA6FA0A0J9YX94 578 aa15.11■□□□□ 0.01
CNOT1-220ENST00000569916 RBM47A0AV96 593 aaKnown RBP15.11■□□□□ 0.01
CNOT1-220ENST00000569916 CFBP00751 764 aa15.11■□□□□ 0.01
CNOT1-220ENST00000569916 SMARCA1P28370 1054 aa15.11■□□□□ 0.01
CNOT1-220ENST00000569916 PDE4DQ08499 809 aa15.11■□□□□ 0.01
CNOT1-220ENST00000569916 KCNA10Q16322 511 aa15.11■□□□□ 0.01
CNOT1-220ENST00000569916 TRIM60Q495X7 471 aa15.11■□□□□ 0.01
CNOT1-220ENST00000569916 IQSEC1Q6DN90 963 aa15.11■□□□□ 0.01
CNOT1-220ENST00000569916 MPHOSPH6Q99547 160 aaKnown RBP15.11■□□□□ 0.01
CNOT1-220ENST00000569916 ATP11BQ9Y2G3 1177 aa15.11■□□□□ 0.01
CNOT1-220ENST00000569916 SNX14Q9Y5W7 946 aa15.11■□□□□ 0.01
CNOT1-220ENST00000569916 SLC12A7Q9Y666 1083 aa15.11■□□□□ 0.01
CNOT1-220ENST00000569916 ASGR1P07306 291 aa15.1■□□□□ 0.01
CNOT1-220ENST00000569916 GNAQP50148 359 aa15.1■□□□□ 0.01
CNOT1-220ENST00000569916 BEX3Q00994 111 aa15.1■□□□□ 0.01
CNOT1-220ENST00000569916 TRAF1Q13077 416 aa15.1■□□□□ 0.01
CNOT1-220ENST00000569916 DUSP28Q4G0W2 176 aa15.1■□□□□ 0.01
CNOT1-220ENST00000569916 GNASQ5JWF2 1037 aa15.1■□□□□ 0.01
CNOT1-220ENST00000569916 APOA5Q6Q788 366 aa15.1■□□□□ 0.01
CNOT1-220ENST00000569916 NOL8Q76FK4 1167 aaKnown RBP15.1■□□□□ 0.01
CNOT1-220ENST00000569916 MICU3Q86XE3 530 aa15.1■□□□□ 0.01
CNOT1-220ENST00000569916 SRBD1Q8N5C6 995 aaKnown RBP15.1■□□□□ 0.01
CNOT1-220ENST00000569916 PCSK9Q8NBP7 692 aaKnown RBP15.1■□□□□ 0.01
CNOT1-220ENST00000569916 NSUN6Q8TEA1 469 aaKnown RBP15.1■□□□□ 0.01
CNOT1-220ENST00000569916 PIBF1Q8WXW3 757 aa15.1■□□□□ 0.01
CNOT1-220ENST00000569916 GDF15Q99988 308 aa15.1■□□□□ 0.01
CNOT1-220ENST00000569916 LZTS2Q9BRK4 669 aa15.1■□□□□ 0.01
CNOT1-220ENST00000569916 MAP3K20Q9NYL2 800 aaKnown RBP15.1■□□□□ 0.01
CNOT1-220ENST00000569916 RBM27Q9P2N5 1060 aaKnown RBP15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms