RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 TMEM132BQ14DG7 1078 aa16.29■□□□□ 0.2
CLN3-235ENST00000568497 ENAHQ8N8S7 591 aaPredicted RBP16.29■□□□□ 0.2
CLN3-235ENST00000568497 KHSRPQ92945 711 aaKnown RBP eCLIP16.29■□□□□ 0.2
CLN3-235ENST00000568497 RNF41Q9H4P4 317 aaPredicted RBP16.29■□□□□ 0.2
CLN3-235ENST00000568497 DIS3Q9Y2L1 958 aaKnown RBP16.29■□□□□ 0.2
CLN3-235ENST00000568497 TNKSO95271 1327 aa16.28■□□□□ 0.2
CLN3-235ENST00000568497 ZNF865P0CJ78 1059 aaPredicted RBP16.28■□□□□ 0.2
CLN3-235ENST00000568497 BMP3P12645 472 aa16.28■□□□□ 0.2
CLN3-235ENST00000568497 MYOGP15173 224 aa16.28■□□□□ 0.2
CLN3-235ENST00000568497 KCTD2Q14681 263 aa16.28■□□□□ 0.2
CLN3-235ENST00000568497 CPXCR1Q8N123 301 aa16.28■□□□□ 0.2
CLN3-235ENST00000568497 KLHDC9Q8NEP7 349 aa16.28■□□□□ 0.2
CLN3-235ENST00000568497 UIMC1Q96RL1 719 aa16.28■□□□□ 0.2
CLN3-235ENST00000568497 RAVER2Q9HCJ3 691 aaKnown RBP16.28■□□□□ 0.2
CLN3-235ENST00000568497 PPP1R9AQ9ULJ8 1098 aa16.28■□□□□ 0.2
CLN3-235ENST00000568497 COG5Q9UP83 839 aa16.28■□□□□ 0.2
CLN3-235ENST00000568497 CHD7Q9P2D1 2997 aa16.28■□□□□ 0.2
CLN3-235ENST00000568497 REV3LO60673 3130 aa16.28■□□□□ 0.2
CLN3-235ENST00000568497 ELP1O95163 1332 aa16.27■□□□□ 0.2
CLN3-235ENST00000568497 MYADML2A6NDP7 307 aa16.27■□□□□ 0.2
CLN3-235ENST00000568497 ZBBXA8MT70 800 aa16.27■□□□□ 0.2
CLN3-235ENST00000568497 SLC25A27O95847 323 aa16.27■□□□□ 0.2
CLN3-235ENST00000568497 C6orf222P0C671 652 aaPredicted RBP16.27■□□□□ 0.2
CLN3-235ENST00000568497 TOP1P11387 765 aaKnown RBP16.27■□□□□ 0.2
CLN3-235ENST00000568497 SLC1A4P43007 532 aa16.27■□□□□ 0.2
CLN3-235ENST00000568497 CDK7P50613 346 aa16.27■□□□□ 0.2
CLN3-235ENST00000568497 IKQ13123 557 aaPredicted RBP16.27■□□□□ 0.2
CLN3-235ENST00000568497 NECTIN1Q15223 517 aa16.27■□□□□ 0.2
CLN3-235ENST00000568497 ADCK5Q3MIX3 580 aa16.27■□□□□ 0.2
CLN3-235ENST00000568497 CCSAPQ6IQ19 270 aaPredicted RBP16.27■□□□□ 0.2
CLN3-235ENST00000568497 REPS2Q8NFH8 660 aa16.27■□□□□ 0.2
CLN3-235ENST00000568497 ZSCAN10Q96SZ4 725 aaPredicted RBP16.27■□□□□ 0.2
CLN3-235ENST00000568497 SLF1Q9BQI6 1058 aa16.27■□□□□ 0.2
CLN3-235ENST00000568497 UBA5Q9GZZ9 404 aa16.27■□□□□ 0.2
CLN3-235ENST00000568497 ZHX1Q9UKY1 873 aaPredicted RBP16.27■□□□□ 0.2
CLN3-235ENST00000568497 RIPK3Q9Y572 518 aa16.27■□□□□ 0.2
CLN3-235ENST00000568497 SLC4A7Q9Y6M7 1214 aa16.27■□□□□ 0.2
CLN3-235ENST00000568497 A0A0U1RQG5 324 aaPredicted RBP16.26■□□□□ 0.19
CLN3-235ENST00000568497 RFXAPO00287 272 aa16.26■□□□□ 0.19
CLN3-235ENST00000568497 TLL1O43897 1013 aa16.26■□□□□ 0.19
CLN3-235ENST00000568497 NOVP48745 357 aa16.26■□□□□ 0.19
CLN3-235ENST00000568497 ZNF792Q3KQV3 632 aa16.26■□□□□ 0.19
CLN3-235ENST00000568497 MB21D2Q8IYB1 491 aaPredicted RBP16.26■□□□□ 0.19
CLN3-235ENST00000568497 GMCL1P1Q8NEA9 526 aa16.26■□□□□ 0.19
CLN3-235ENST00000568497 MYL10Q9BUA6 226 aa16.26■□□□□ 0.19
CLN3-235ENST00000568497 CERS4Q9HA82 394 aa16.26■□□□□ 0.19
CLN3-235ENST00000568497 TCP11L1Q9NUJ3 509 aa16.26■□□□□ 0.19
CLN3-235ENST00000568497 FAM184BQ9ULE4 1060 aa16.26■□□□□ 0.19
CLN3-235ENST00000568497 MTCH2Q9Y6C9 303 aa16.26■□□□□ 0.19
CLN3-235ENST00000568497 ARVCFO00192 962 aa16.25■□□□□ 0.19
CLN3-235ENST00000568497 VWA5AO00534 786 aa16.25■□□□□ 0.19
CLN3-235ENST00000568497 SEC24BO95487 1268 aa16.25■□□□□ 0.19
CLN3-235ENST00000568497 ASGR1P07306 291 aa16.25■□□□□ 0.19
CLN3-235ENST00000568497 PDHBP11177 359 aa16.25■□□□□ 0.19
CLN3-235ENST00000568497 RXRAP19793 462 aa16.25■□□□□ 0.19
CLN3-235ENST00000568497 SEC23AQ15436 765 aa16.25■□□□□ 0.19
CLN3-235ENST00000568497 CASC1Q6TDU7 716 aa16.25■□□□□ 0.19
CLN3-235ENST00000568497 FAM126BQ8IXS8 530 aa16.25■□□□□ 0.19
CLN3-235ENST00000568497 PCSK9Q8NBP7 692 aaKnown RBP16.25■□□□□ 0.19
CLN3-235ENST00000568497 HLA-CQ95604 372 aa16.25■□□□□ 0.19
CLN3-235ENST00000568497 KRT23Q9C075 422 aa16.25■□□□□ 0.19
CLN3-235ENST00000568497 SPC25Q9HBM1 224 aa16.25■□□□□ 0.19
CLN3-235ENST00000568497 HOMER2Q9NSB8 354 aa16.25■□□□□ 0.19
CLN3-235ENST00000568497 PCDHA11Q9Y5I1 949 aa16.25■□□□□ 0.19
CLN3-235ENST00000568497 IFIT3O14879 490 aaKnown RBP16.24■□□□□ 0.19
CLN3-235ENST00000568497 CST5P28325 142 aaPredicted RBP16.24■□□□□ 0.19
CLN3-235ENST00000568497 IRX5P78411 483 aaPredicted RBP16.24■□□□□ 0.19
CLN3-235ENST00000568497 KRT40Q6A162 431 aa16.24■□□□□ 0.19
CLN3-235ENST00000568497 RALYLQ86SE5 291 aaKnown RBP16.24■□□□□ 0.19
CLN3-235ENST00000568497 STAG2Q8N3U4 1231 aa16.24■□□□□ 0.19
CLN3-235ENST00000568497 AGBL1Q96MI9 1066 aa16.24■□□□□ 0.19
CLN3-235ENST00000568497 UBAC1Q9BSL1 405 aa16.24■□□□□ 0.19
CLN3-235ENST00000568497 HIPK3Q9H422 1215 aa16.24■□□□□ 0.19
CLN3-235ENST00000568497 PRR12Q9ULL5 1215 aa16.24■□□□□ 0.19
CLN3-235ENST00000568497 DDX49Q9Y6V7 483 aaKnown RBP16.24■□□□□ 0.19
CLN3-235ENST00000568497 BAZ2BQ9UIF8 2168 aaKnown RBP16.24■□□□□ 0.19
CLN3-235ENST00000568497 PRR33A8MZF0 331 aa16.23■□□□□ 0.19
CLN3-235ENST00000568497 PI4K2BG5E9Z4 385 aa16.23■□□□□ 0.19
CLN3-235ENST00000568497 PRC1O43663 620 aa16.23■□□□□ 0.19
CLN3-235ENST00000568497 ATP2A2P16615 1042 aaKnown RBP16.23■□□□□ 0.19
CLN3-235ENST00000568497 POU3F3P20264 500 aaPredicted RBP16.23■□□□□ 0.19
CLN3-235ENST00000568497 CCL23P55773 120 aa16.23■□□□□ 0.19
CLN3-235ENST00000568497 TRDNQ13061 729 aa16.23■□□□□ 0.19
CLN3-235ENST00000568497 TMEM67Q5HYA8 995 aa16.23■□□□□ 0.19
CLN3-235ENST00000568497 IQCA1Q86XH1 822 aa16.23■□□□□ 0.19
CLN3-235ENST00000568497 RIOX2Q8IUF8 465 aa16.23■□□□□ 0.19
CLN3-235ENST00000568497 MSL3Q8N5Y2 521 aaKnown RBP16.23■□□□□ 0.19
CLN3-235ENST00000568497 PNMA1Q8ND90 353 aa16.23■□□□□ 0.19
CLN3-235ENST00000568497 NCOA7Q8NI08 942 aa16.23■□□□□ 0.19
CLN3-235ENST00000568497 PIBF1Q8WXW3 757 aa16.23■□□□□ 0.19
CLN3-235ENST00000568497 KAT14Q9H8E8 782 aa16.23■□□□□ 0.19
CLN3-235ENST00000568497 VAT1LQ9HCJ6 419 aa16.23■□□□□ 0.19
CLN3-235ENST00000568497 ZNF214Q9UL59 606 aaPredicted RBP16.23■□□□□ 0.19
CLN3-235ENST00000568497 GTF3C3Q9Y5Q9 886 aa16.23■□□□□ 0.19
CLN3-235ENST00000568497 UMODL1Q5DID0 1318 aa16.22■□□□□ 0.19
CLN3-235ENST00000568497 DUSP11O75319 330 aaKnown RBP16.22■□□□□ 0.19
CLN3-235ENST00000568497 CA3P07451 260 aa16.22■□□□□ 0.19
CLN3-235ENST00000568497 CSPP1Q1MSJ5 1256 aa16.22■□□□□ 0.19
CLN3-235ENST00000568497 SLC35G1Q2M3R5 365 aa16.22■□□□□ 0.19
CLN3-235ENST00000568497 IFIT1BQ5T764 474 aaKnown RBP16.22■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms