RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 IL9P15248 144 aa19.3■□□□□ 0.68
CLK3-223ENST00000568488 CPT1AP50416 773 aa19.3■□□□□ 0.68
CLK3-223ENST00000568488 TKFCQ3LXA3 575 aa19.3■□□□□ 0.68
CLK3-223ENST00000568488 DUSP28Q4G0W2 176 aa19.3■□□□□ 0.68
CLK3-223ENST00000568488 PURBQ96QR8 312 aaKnown RBP19.3■□□□□ 0.68
CLK3-223ENST00000568488 NOD1Q9Y239 953 aa19.3■□□□□ 0.68
CLK3-223ENST00000568488 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP19.29■□□□□ 0.68
CLK3-223ENST00000568488 IGKV6D-41A0A0C4DH26 115 aa19.29■□□□□ 0.68
CLK3-223ENST00000568488 PITPNM1O00562 1244 aa19.29■□□□□ 0.68
CLK3-223ENST00000568488 PRDM1O75626 825 aa19.29■□□□□ 0.68
CLK3-223ENST00000568488 BAIAP3O94812 1187 aa19.29■□□□□ 0.68
CLK3-223ENST00000568488 STAT2P52630 851 aa19.29■□□□□ 0.68
CLK3-223ENST00000568488 CHMP4BP1P59074 171 aa19.29■□□□□ 0.68
CLK3-223ENST00000568488 SNAP25P60880 206 aa19.29■□□□□ 0.68
CLK3-223ENST00000568488 BFSP2Q13515 415 aa19.29■□□□□ 0.68
CLK3-223ENST00000568488 LEXMQ3ZCV2 418 aa19.29■□□□□ 0.68
CLK3-223ENST00000568488 SBK1Q52WX2 424 aa19.29■□□□□ 0.68
CLK3-223ENST00000568488 MUM1L1Q5H9M0 696 aa19.29■□□□□ 0.68
CLK3-223ENST00000568488 PTCRAQ6ISU1 281 aaPredicted RBP19.29■□□□□ 0.68
CLK3-223ENST00000568488 NSMFQ6X4W1 530 aa19.29■□□□□ 0.68
CLK3-223ENST00000568488 RPAP2Q8IXW5 612 aaPredicted RBP19.29■□□□□ 0.68
CLK3-223ENST00000568488 GMCL1P1Q8NEA9 526 aa19.29■□□□□ 0.68
CLK3-223ENST00000568488 OR6J1Q8NGC5 347 aa19.29■□□□□ 0.68
CLK3-223ENST00000568488 CHURC1Q8WUH1 139 aa19.29■□□□□ 0.68
CLK3-223ENST00000568488 KIF1BPQ96EK5 621 aa19.29■□□□□ 0.68
CLK3-223ENST00000568488 FBXL18Q96ME1 805 aa19.29■□□□□ 0.68
CLK3-223ENST00000568488 WDR11Q9BZH6 1224 aa19.29■□□□□ 0.68
CLK3-223ENST00000568488 SUGCTQ9HAC7 445 aa19.29■□□□□ 0.68
CLK3-223ENST00000568488 MTMR4Q9NYA4 1195 aa19.29■□□□□ 0.68
CLK3-223ENST00000568488 TTLL1O95922 423 aa19.28■□□□□ 0.68
CLK3-223ENST00000568488 RLBP1P12271 317 aa19.28■□□□□ 0.68
CLK3-223ENST00000568488 ZSCAN25Q6NSZ9 544 aa19.28■□□□□ 0.68
CLK3-223ENST00000568488 CYP39A1Q9NYL5 469 aa19.28■□□□□ 0.68
CLK3-223ENST00000568488 GREB1LQ9C091 1923 aaPredicted RBP19.27■□□□□ 0.68
CLK3-223ENST00000568488 BRDTQ58F21 947 aaPredicted RBP19.27■□□□□ 0.68
CLK3-223ENST00000568488 FAM160B2Q86V87 743 aa19.27■□□□□ 0.68
CLK3-223ENST00000568488 STAG1Q8WVM7 1258 aa19.27■□□□□ 0.68
CLK3-223ENST00000568488 CRBNQ96SW2 442 aa19.27■□□□□ 0.68
CLK3-223ENST00000568488 HAUS7Q99871 368 aa19.27■□□□□ 0.68
CLK3-223ENST00000568488 COL4A4P53420 1690 aaPredicted RBP19.27■□□□□ 0.67
CLK3-223ENST00000568488 MYH4Q9Y623 1939 aa19.26■□□□□ 0.67
CLK3-223ENST00000568488 ATP5JP18859 108 aa19.26■□□□□ 0.67
CLK3-223ENST00000568488 WDR5P61964 334 aaKnown RBP19.26■□□□□ 0.67
CLK3-223ENST00000568488 TGS1Q96RS0 853 aaKnown RBP19.26■□□□□ 0.67
CLK3-223ENST00000568488 STRBPQ96SI9 672 aaKnown RBP19.26■□□□□ 0.67
CLK3-223ENST00000568488 ZNF287Q9HBT7 754 aa19.26■□□□□ 0.67
CLK3-223ENST00000568488 GRXCR2A6NFK2 248 aa19.25■□□□□ 0.67
CLK3-223ENST00000568488 GSG1L2A8MUP6 293 aa19.25■□□□□ 0.67
CLK3-223ENST00000568488 DCXO43602 365 aa19.25■□□□□ 0.67
CLK3-223ENST00000568488 MCCP23508 829 aa19.25■□□□□ 0.67
CLK3-223ENST00000568488 SLC1A4P43007 532 aa19.25■□□□□ 0.67
CLK3-223ENST00000568488 DEFB103AP81534 67 aa19.25■□□□□ 0.67
CLK3-223ENST00000568488 NFRKBQ6P4R8 1299 aa19.25■□□□□ 0.67
CLK3-223ENST00000568488 RAD9AQ99638 391 aa19.25■□□□□ 0.67
CLK3-223ENST00000568488 SYNPO2Q9UMS6 1093 aa19.25■□□□□ 0.67
CLK3-223ENST00000568488 BRWD1Q9NSI6 2320 aa19.25■□□□□ 0.67
CLK3-223ENST00000568488 TSPY3P0CV98 308 aa19.24■□□□□ 0.67
CLK3-223ENST00000568488 TSPY8P0CW00 308 aa19.24■□□□□ 0.67
CLK3-223ENST00000568488 ERVK-21P61565 698 aa19.24■□□□□ 0.67
CLK3-223ENST00000568488 PTPN11Q06124 597 aaPredicted RBP19.24■□□□□ 0.67
CLK3-223ENST00000568488 BAATQ14032 418 aaPredicted RBP19.24■□□□□ 0.67
CLK3-223ENST00000568488 LRRFIP1Q32MZ4 808 aaKnown RBP19.24■□□□□ 0.67
CLK3-223ENST00000568488 FAM117BQ6P1L5 589 aa19.24■□□□□ 0.67
CLK3-223ENST00000568488 KCTD1Q719H9 257 aa19.24■□□□□ 0.67
CLK3-223ENST00000568488 MORC4Q8TE76 937 aa19.24■□□□□ 0.67
CLK3-223ENST00000568488 KCNH6Q9H252 994 aa19.24■□□□□ 0.67
CLK3-223ENST00000568488 ADD3Q9UEY8 706 aaKnown RBP19.24■□□□□ 0.67
CLK3-223ENST00000568488 CCPG1Q9ULG6 757 aa19.24■□□□□ 0.67
CLK3-223ENST00000568488 TET1Q8NFU7 2136 aa19.24■□□□□ 0.67
CLK3-223ENST00000568488 KPNA6O60684 536 aa19.23■□□□□ 0.67
CLK3-223ENST00000568488 APPP05067 770 aa19.23■□□□□ 0.67
CLK3-223ENST00000568488 TDO2P48775 406 aa19.23■□□□□ 0.67
CLK3-223ENST00000568488 PTGISQ16647 500 aa19.23■□□□□ 0.67
CLK3-223ENST00000568488 GIMAP6Q6P9H5 292 aa19.23■□□□□ 0.67
CLK3-223ENST00000568488 EP400NLQ6ZTU2 488 aa19.23■□□□□ 0.67
CLK3-223ENST00000568488 CCDC155Q8N6L0 562 aa19.23■□□□□ 0.67
CLK3-223ENST00000568488 RAD50Q92878 1312 aa19.23■□□□□ 0.67
CLK3-223ENST00000568488 LINC01553A4QN01 128 aa19.22■□□□□ 0.67
CLK3-223ENST00000568488 H3BQ06 376 aaPredicted RBP19.22■□□□□ 0.67
CLK3-223ENST00000568488 GJB5O95377 273 aa19.22■□□□□ 0.67
CLK3-223ENST00000568488 ALDH5A1P51649 535 aaPredicted RBP19.22■□□□□ 0.67
CLK3-223ENST00000568488 PUS10Q3MIT2 529 aaKnown RBP19.22■□□□□ 0.67
CLK3-223ENST00000568488 PRR12Q9ULL5 1215 aa19.22■□□□□ 0.67
CLK3-223ENST00000568488 MTMR7Q9Y216 660 aa19.22■□□□□ 0.67
CLK3-223ENST00000568488 WDFY4Q6ZS81 3184 aa19.22■□□□□ 0.67
CLK3-223ENST00000568488 RBM47A0AV96 593 aaKnown RBP19.21■□□□□ 0.67
CLK3-223ENST00000568488 POTEB3A0JP26 581 aa19.21■□□□□ 0.67
CLK3-223ENST00000568488 TFAP4Q01664 338 aa19.21■□□□□ 0.67
CLK3-223ENST00000568488 GPNMBQ14956 572 aa19.21■□□□□ 0.67
CLK3-223ENST00000568488 PPP2R5BQ15173 497 aa19.21■□□□□ 0.67
CLK3-223ENST00000568488 CNKSR3Q6P9H4 555 aa19.21■□□□□ 0.67
CLK3-223ENST00000568488 POTEBQ6S5H4 581 aa19.21■□□□□ 0.67
CLK3-223ENST00000568488 NEDD1Q8NHV4 660 aa19.21■□□□□ 0.67
CLK3-223ENST00000568488 CAGE1Q8TC20 777 aa19.21■□□□□ 0.67
CLK3-223ENST00000568488 AFAP1L1Q8TED9 768 aa19.21■□□□□ 0.67
CLK3-223ENST00000568488 COPS5Q92905 334 aa19.21■□□□□ 0.67
CLK3-223ENST00000568488 GMCL1Q96IK5 515 aa19.21■□□□□ 0.67
CLK3-223ENST00000568488 PTPRSQ13332 1948 aa19.2■□□□□ 0.66
CLK3-223ENST00000568488 PTPDC1A2A3K4 754 aa19.2■□□□□ 0.66
CLK3-223ENST00000568488 RAB11FIP3O75154 756 aa19.2■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms