RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 RIOX1Q9H6W3 641 aa21.75■■□□□ 1.07
CLN3-227ENST00000567495 LY9Q9HBG7 655 aa21.75■■□□□ 1.07
CLN3-227ENST00000567495 RBM27Q9P2N5 1060 aaKnown RBP21.75■■□□□ 1.07
CLN3-227ENST00000567495 A0A1W2PQ45 241 aaPredicted RBP21.74■■□□□ 1.07
CLN3-227ENST00000567495 A0A1W2PQY0 241 aa21.74■■□□□ 1.07
CLN3-227ENST00000567495 LIFRP42702 1097 aa21.74■■□□□ 1.07
CLN3-227ENST00000567495 PDE4DQ08499 809 aa21.74■■□□□ 1.07
CLN3-227ENST00000567495 KCNA10Q16322 511 aa21.74■■□□□ 1.07
CLN3-227ENST00000567495 GNASQ5JWF2 1037 aa21.74■■□□□ 1.07
CLN3-227ENST00000567495 CCSAPQ6IQ19 270 aaPredicted RBP21.74■■□□□ 1.07
CLN3-227ENST00000567495 TAPT1Q6NXT6 567 aa21.74■■□□□ 1.07
CLN3-227ENST00000567495 SAMD3Q8N6K7 520 aa21.74■■□□□ 1.07
CLN3-227ENST00000567495 PURBQ96QR8 312 aaKnown RBP21.74■■□□□ 1.07
CLN3-227ENST00000567495 LZTS2Q9BRK4 669 aa21.74■■□□□ 1.07
CLN3-227ENST00000567495 AP5M1Q9H0R1 490 aa21.74■■□□□ 1.07
CLN3-227ENST00000567495 SENP2Q9HC62 589 aa21.74■■□□□ 1.07
CLN3-227ENST00000567495 MAP3K20Q9NYL2 800 aaKnown RBP21.74■■□□□ 1.07
CLN3-227ENST00000567495 GNEQ9Y223 722 aaKnown RBP21.74■■□□□ 1.07
CLN3-227ENST00000567495 ATP11BQ9Y2G3 1177 aa21.74■■□□□ 1.07
CLN3-227ENST00000567495 ELP1O95163 1332 aa21.74■■□□□ 1.07
CLN3-227ENST00000567495 SMCHD1A6NHR9 2005 aa21.73■■□□□ 1.07
CLN3-227ENST00000567495 TRIOBPQ9H2D6 2365 aa21.73■■□□□ 1.07
CLN3-227ENST00000567495 ADCY6O43306 1168 aa21.73■■□□□ 1.07
CLN3-227ENST00000567495 SYN1P17600 705 aa21.73■■□□□ 1.07
CLN3-227ENST00000567495 EDNRBP24530 442 aa21.73■■□□□ 1.07
CLN3-227ENST00000567495 SMARCA1P28370 1054 aa21.73■■□□□ 1.07
CLN3-227ENST00000567495 GNAQP50148 359 aa21.73■■□□□ 1.07
CLN3-227ENST00000567495 KRT32Q14532 448 aa21.73■■□□□ 1.07
CLN3-227ENST00000567495 TSGA10IPQ3SY00 556 aa21.73■■□□□ 1.07
CLN3-227ENST00000567495 NFXL1Q6ZNB6 911 aa21.73■■□□□ 1.07
CLN3-227ENST00000567495 FBXO16Q8IX29 292 aaPredicted RBP21.73■■□□□ 1.07
CLN3-227ENST00000567495 ZNF654Q8IZM8 581 aa21.73■■□□□ 1.07
CLN3-227ENST00000567495 CTCFLQ8NI51 663 aaPredicted RBP21.73■■□□□ 1.07
CLN3-227ENST00000567495 SYTL5Q8TDW5 730 aaPredicted RBP21.73■■□□□ 1.07
CLN3-227ENST00000567495 NSUN6Q8TEA1 469 aaKnown RBP21.73■■□□□ 1.07
CLN3-227ENST00000567495 GLT1D1Q96MS3 346 aa21.73■■□□□ 1.07
CLN3-227ENST00000567495 STARD7Q9NQZ5 370 aa21.73■■□□□ 1.07
CLN3-227ENST00000567495 FRMPD3Q5JV73 1810 aa21.73■■□□□ 1.07
CLN3-227ENST00000567495 CCDC69A6NI79 296 aa21.72■■□□□ 1.07
CLN3-227ENST00000567495 SH2B2O14492 632 aaPredicted RBP21.72■■□□□ 1.07
CLN3-227ENST00000567495 ZEB2O60315 1214 aa21.72■■□□□ 1.07
CLN3-227ENST00000567495 CENPBP07199 599 aaPredicted RBP21.72■■□□□ 1.07
CLN3-227ENST00000567495 CALM1P0DP23 149 aa21.72■■□□□ 1.07
CLN3-227ENST00000567495 CALM2P0DP24 149 aa21.72■■□□□ 1.07
CLN3-227ENST00000567495 CALM3P0DP25 149 aa21.72■■□□□ 1.07
CLN3-227ENST00000567495 SMPD1P17405 629 aa21.72■■□□□ 1.07
CLN3-227ENST00000567495 DUSP28Q4G0W2 176 aa21.72■■□□□ 1.07
CLN3-227ENST00000567495 EEPD1Q7L9B9 569 aa21.72■■□□□ 1.07
CLN3-227ENST00000567495 TLK2Q86UE8 772 aa21.72■■□□□ 1.07
CLN3-227ENST00000567495 IWS1Q96ST2 819 aa21.72■■□□□ 1.07
CLN3-227ENST00000567495 LBHD1Q9BQE6 289 aaPredicted RBP21.72■■□□□ 1.07
CLN3-227ENST00000567495 PCDHA1Q9Y5I3 950 aa21.72■■□□□ 1.07
CLN3-227ENST00000567495 PNMA6FA0A0J9YX94 578 aa21.71■■□□□ 1.07
CLN3-227ENST00000567495 RBM47A0AV96 593 aaKnown RBP21.71■■□□□ 1.07
CLN3-227ENST00000567495 CABYRO75952 493 aa21.71■■□□□ 1.07
CLN3-227ENST00000567495 SLC34A2O95436 690 aa21.71■■□□□ 1.07
CLN3-227ENST00000567495 MAGEA10P43363 369 aaPredicted RBP21.71■■□□□ 1.07
CLN3-227ENST00000567495 GHRHRQ02643 423 aa21.71■■□□□ 1.07
CLN3-227ENST00000567495 TRIM60Q495X7 471 aa21.71■■□□□ 1.07
CLN3-227ENST00000567495 SCFD2Q8WU76 684 aa21.71■■□□□ 1.07
CLN3-227ENST00000567495 NEK1Q96PY6 1258 aa21.71■■□□□ 1.07
CLN3-227ENST00000567495 PDGFCQ9NRA1 345 aa21.71■■□□□ 1.07
CLN3-227ENST00000567495 PPP4R2Q9NY27 417 aa21.71■■□□□ 1.07
CLN3-227ENST00000567495 C11orf97A0A1B0GVM6 126 aaPredicted RBP21.7■■□□□ 1.06
CLN3-227ENST00000567495 MYADML2A6NDP7 307 aa21.7■■□□□ 1.06
CLN3-227ENST00000567495 NKRFO15226 690 aaKnown RBP eCLIP21.7■■□□□ 1.06
CLN3-227ENST00000567495 ASGR1P07306 291 aa21.7■■□□□ 1.06
CLN3-227ENST00000567495 TLE2Q04725 743 aa21.7■■□□□ 1.06
CLN3-227ENST00000567495 FSCN1Q16658 493 aaKnown RBP21.7■■□□□ 1.06
CLN3-227ENST00000567495 TOX2Q96NM4 488 aa21.7■■□□□ 1.06
CLN3-227ENST00000567495 SPZ1Q9BXG8 430 aa21.7■■□□□ 1.06
CLN3-227ENST00000567495 WDR11Q9BZH6 1224 aa21.7■■□□□ 1.06
CLN3-227ENST00000567495 SLC12A7Q9Y666 1083 aa21.7■■□□□ 1.06
CLN3-227ENST00000567495 DDX49Q9Y6V7 483 aaKnown RBP21.7■■□□□ 1.06
CLN3-227ENST00000567495 CTAGE5O15320 804 aa21.69■■□□□ 1.06
CLN3-227ENST00000567495 DYNC1LI2O43237 492 aaPredicted RBP21.69■■□□□ 1.06
CLN3-227ENST00000567495 CYTH3O43739 400 aa21.69■■□□□ 1.06
CLN3-227ENST00000567495 REC8O95072 547 aa21.69■■□□□ 1.06
CLN3-227ENST00000567495 HMGB1P09429 215 aaKnown RBP21.69■■□□□ 1.06
CLN3-227ENST00000567495 HSD17B4P51659 736 aa21.69■■□□□ 1.06
CLN3-227ENST00000567495 ANKRD33Q7Z3H0 272 aa21.69■■□□□ 1.06
CLN3-227ENST00000567495 SGMS1Q86VZ5 419 aa21.69■■□□□ 1.06
CLN3-227ENST00000567495 HOMER1Q86YM7 354 aa21.69■■□□□ 1.06
CLN3-227ENST00000567495 TBC1D5Q92609 795 aa21.69■■□□□ 1.06
CLN3-227ENST00000567495 VTI1AQ96AJ9 217 aa21.69■■□□□ 1.06
CLN3-227ENST00000567495 PIGSQ96S52 555 aa21.69■■□□□ 1.06
CLN3-227ENST00000567495 RMDN3Q96TC7 470 aa21.69■■□□□ 1.06
CLN3-227ENST00000567495 SEZ6LQ9BYH1 1024 aa21.69■■□□□ 1.06
CLN3-227ENST00000567495 GPHNQ9NQX3 736 aaPredicted RBP21.69■■□□□ 1.06
CLN3-227ENST00000567495 MROH7Q68CQ1 1323 aa21.69■■□□□ 1.06
CLN3-227ENST00000567495 RANBP2P49792 3224 aaKnown RBP21.68■■□□□ 1.06
CLN3-227ENST00000567495 DCDC2CA8MYV0 355 aa21.68■■□□□ 1.06
CLN3-227ENST00000567495 PPP1R11O60927 126 aaPredicted RBP21.68■■□□□ 1.06
CLN3-227ENST00000567495 CFBP00751 764 aa21.68■■□□□ 1.06
CLN3-227ENST00000567495 FXR1P51114 621 aaKnown RBP eCLIP21.68■■□□□ 1.06
CLN3-227ENST00000567495 SLC35G1Q2M3R5 365 aa21.68■■□□□ 1.06
CLN3-227ENST00000567495 BRDTQ58F21 947 aaPredicted RBP21.68■■□□□ 1.06
CLN3-227ENST00000567495 SYNE3Q6ZMZ3 975 aa21.68■■□□□ 1.06
CLN3-227ENST00000567495 DHX32Q7L7V1 743 aaKnown RBP21.68■■□□□ 1.06
CLN3-227ENST00000567495 RRP36Q96EU6 259 aaKnown RBP21.68■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms