RNA–Protein interactions for RNA: ENST00000566126.5

CLK3-217, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 732 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-217ENST00000566126 F5H6K3 240 aa20.01■□□□□ 0.79
CLK3-217ENST00000566126 PRKAB2O43741 272 aa20.01■□□□□ 0.79
CLK3-217ENST00000566126 GNAI2P04899 355 aa20.01■□□□□ 0.79
CLK3-217ENST00000566126 MYL3P08590 195 aa20.01■□□□□ 0.79
CLK3-217ENST00000566126 LTBRP36941 435 aa20.01■□□□□ 0.79
CLK3-217ENST00000566126 KLRC3Q07444 240 aa20.01■□□□□ 0.79
CLK3-217ENST00000566126 SMAD2Q15796 467 aaKnown RBP20.01■□□□□ 0.79
CLK3-217ENST00000566126 PKN1Q16512 942 aa20.01■□□□□ 0.79
CLK3-217ENST00000566126 LRRFIP1Q32MZ4 808 aaKnown RBP20.01■□□□□ 0.79
CLK3-217ENST00000566126 TIGD5Q53EQ6 642 aa20.01■□□□□ 0.79
CLK3-217ENST00000566126 C12orf60Q5U649 245 aa20.01■□□□□ 0.79
CLK3-217ENST00000566126 TRIM67Q6ZTA4 783 aa20.01■□□□□ 0.79
CLK3-217ENST00000566126 BANK1Q8NDB2 785 aa20.01■□□□□ 0.79
CLK3-217ENST00000566126 EAF2Q96CJ1 260 aaPredicted RBP20.01■□□□□ 0.79
CLK3-217ENST00000566126 MTG1Q9BT17 334 aaPredicted RBP20.01■□□□□ 0.79
CLK3-217ENST00000566126 CTNNA3Q9UI47 895 aa20.01■□□□□ 0.79
CLK3-217ENST00000566126 CTDP1Q9Y5B0 961 aaPredicted RBP20.01■□□□□ 0.79
CLK3-217ENST00000566126 CACNA1BQ00975 2339 aa20.01■□□□□ 0.79
CLK3-217ENST00000566126 OAZ1P54368 228 aa20■□□□□ 0.79
CLK3-217ENST00000566126 POLA2Q14181 598 aa20■□□□□ 0.79
CLK3-217ENST00000566126 DUSP28Q4G0W2 176 aa20■□□□□ 0.79
CLK3-217ENST00000566126 SLC9C2Q5TAH2 1124 aa20■□□□□ 0.79
CLK3-217ENST00000566126 FAM117BQ6P1L5 589 aa20■□□□□ 0.79
CLK3-217ENST00000566126 NFRKBQ6P4R8 1299 aa20■□□□□ 0.79
CLK3-217ENST00000566126 KIAA1211Q6ZU35 1233 aa20■□□□□ 0.79
CLK3-217ENST00000566126 SUGP1Q8IWZ8 645 aaKnown RBP20■□□□□ 0.79
CLK3-217ENST00000566126 ACAD9Q9H845 621 aa20■□□□□ 0.79
CLK3-217ENST00000566126 VPS13AQ96RL7 3174 aa20■□□□□ 0.79
CLK3-217ENST00000566126 MYH4Q9Y623 1939 aa20■□□□□ 0.79
CLK3-217ENST00000566126 ZNF532Q9HCE3 1301 aa20■□□□□ 0.79
CLK3-217ENST00000566126 TCRBV5S4A2TA0A5A2 114 aa19.99■□□□□ 0.79
CLK3-217ENST00000566126 USP17L12C9JPN9 530 aa19.99■□□□□ 0.79
CLK3-217ENST00000566126 USP17L21D6R901 530 aa19.99■□□□□ 0.79
CLK3-217ENST00000566126 SLFN5Q08AF3 891 aa19.99■□□□□ 0.79
CLK3-217ENST00000566126 OS9Q13438 667 aaPredicted RBP19.99■□□□□ 0.79
CLK3-217ENST00000566126 PTPROQ16827 1216 aa19.99■□□□□ 0.79
CLK3-217ENST00000566126 CNKSR3Q6P9H4 555 aa19.99■□□□□ 0.79
CLK3-217ENST00000566126 CTAGE1Q96RT6 745 aa19.99■□□□□ 0.79
CLK3-217ENST00000566126 POP1Q99575 1024 aaKnown RBP19.99■□□□□ 0.79
CLK3-217ENST00000566126 CLDND1Q9NY35 253 aa19.99■□□□□ 0.79
CLK3-217ENST00000566126 COG6Q9Y2V7 657 aa19.99■□□□□ 0.79
CLK3-217ENST00000566126 COL4A6Q14031 1691 aa19.98■□□□□ 0.79
CLK3-217ENST00000566126 FBXL6Q8N531 539 aa19.98■□□□□ 0.79
CLK3-217ENST00000566126 ATOH1Q92858 354 aaPredicted RBP19.98■□□□□ 0.79
CLK3-217ENST00000566126 CRBNQ96SW2 442 aa19.98■□□□□ 0.79
CLK3-217ENST00000566126 ARMT1Q9H993 441 aa19.98■□□□□ 0.79
CLK3-217ENST00000566126 VTA1Q9NP79 307 aa19.98■□□□□ 0.79
CLK3-217ENST00000566126 MICAL3Q7RTP6 2002 aa19.97■□□□□ 0.79
CLK3-217ENST00000566126 ABHD14A-ACY1A0A1B0GW23 586 aa19.97■□□□□ 0.79
CLK3-217ENST00000566126 MBTPS2O43462 519 aa19.97■□□□□ 0.79
CLK3-217ENST00000566126 NBNO60934 754 aa19.97■□□□□ 0.79
CLK3-217ENST00000566126 CXCL10P02778 98 aa19.97■□□□□ 0.79
CLK3-217ENST00000566126 CPT1AP50416 773 aa19.97■□□□□ 0.79
CLK3-217ENST00000566126 VCPP55072 806 aaKnown RBP19.97■□□□□ 0.79
CLK3-217ENST00000566126 PTPN11Q06124 597 aaPredicted RBP19.97■□□□□ 0.79
CLK3-217ENST00000566126 ASCL5Q7RTU5 278 aa19.97■□□□□ 0.79
CLK3-217ENST00000566126 AFAP1L1Q8TED9 768 aa19.97■□□□□ 0.79
CLK3-217ENST00000566126 ATP8A2Q9NTI2 1148 aa19.97■□□□□ 0.79
CLK3-217ENST00000566126 RNF146Q9NTX7 359 aa19.97■□□□□ 0.79
CLK3-217ENST00000566126 NLRC5Q86WI3 1866 aa19.96■□□□□ 0.79
CLK3-217ENST00000566126 PROB1E7EW31 1015 aa19.96■□□□□ 0.79
CLK3-217ENST00000566126 SURF6O75683 361 aaKnown RBP19.96■□□□□ 0.79
CLK3-217ENST00000566126 DLX2Q07687 328 aaPredicted RBP19.96■□□□□ 0.79
CLK3-217ENST00000566126 CLUL1Q15846 466 aa19.96■□□□□ 0.79
CLK3-217ENST00000566126 EPC2Q52LR7 807 aa19.96■□□□□ 0.79
CLK3-217ENST00000566126 RPAINQ86UA6 219 aa19.96■□□□□ 0.79
CLK3-217ENST00000566126 CAGE1Q8TC20 777 aa19.96■□□□□ 0.79
CLK3-217ENST00000566126 MORC4Q8TE76 937 aa19.96■□□□□ 0.79
CLK3-217ENST00000566126 SSH3Q8TE77 659 aa19.96■□□□□ 0.79
CLK3-217ENST00000566126 NSUN3Q9H649 340 aaKnown RBP19.96■□□□□ 0.79
CLK3-217ENST00000566126 GPHNQ9NQX3 736 aaPredicted RBP19.96■□□□□ 0.79
CLK3-217ENST00000566126 NYAP2Q9P242 653 aa19.96■□□□□ 0.79
CLK3-217ENST00000566126 FEM1BQ9UK73 627 aa19.96■□□□□ 0.79
CLK3-217ENST00000566126 NOD1Q9Y239 953 aa19.96■□□□□ 0.79
CLK3-217ENST00000566126 H3BNC9 293 aa19.95■□□□□ 0.78
CLK3-217ENST00000566126 CTC1Q2NKJ3 1217 aa19.95■□□□□ 0.78
CLK3-217ENST00000566126 LRRC8DQ7L1W4 858 aa19.95■□□□□ 0.78
CLK3-217ENST00000566126 SP7Q8TDD2 431 aaPredicted RBP19.95■□□□□ 0.78
CLK3-217ENST00000566126 PURBQ96QR8 312 aaKnown RBP19.95■□□□□ 0.78
CLK3-217ENST00000566126 WDR11Q9BZH6 1224 aa19.95■□□□□ 0.78
CLK3-217ENST00000566126 INSL6Q9Y581 213 aa19.95■□□□□ 0.78
CLK3-217ENST00000566126 SELPP16109 830 aa19.94■□□□□ 0.78
CLK3-217ENST00000566126 HTRA4P83105 476 aaPredicted RBP19.94■□□□□ 0.78
CLK3-217ENST00000566126 ZXDAP98168 799 aa19.94■□□□□ 0.78
CLK3-217ENST00000566126 PTGISQ16647 500 aa19.94■□□□□ 0.78
CLK3-217ENST00000566126 FAM9BQ8IZU0 186 aa19.94■□□□□ 0.78
CLK3-217ENST00000566126 DHX38Q92620 1227 aaKnown RBP19.94■□□□□ 0.78
CLK3-217ENST00000566126 IRF2BPLQ9H1B7 796 aa19.94■□□□□ 0.78
CLK3-217ENST00000566126 STXBP3O00186 592 aa19.93■□□□□ 0.78
CLK3-217ENST00000566126 GPM6BQ13491 265 aa19.93■□□□□ 0.78
CLK3-217ENST00000566126 SLFNL1Q499Z3 407 aa19.93■□□□□ 0.78
CLK3-217ENST00000566126 LIN28BQ6ZN17 250 aaKnown RBP eCLIP19.93■□□□□ 0.785e-12■■□□□ 14.3
CLK3-217ENST00000566126 CCDC155Q8N6L0 562 aa19.93■□□□□ 0.78
CLK3-217ENST00000566126 OR6J1Q8NGC5 347 aa19.93■□□□□ 0.78
CLK3-217ENST00000566126 CYP39A1Q9NYL5 469 aa19.93■□□□□ 0.78
CLK3-217ENST00000566126 WDR87Q6ZQQ6 2873 aa19.93■□□□□ 0.78
CLK3-217ENST00000566126 RBM47A0AV96 593 aaKnown RBP19.92■□□□□ 0.78
CLK3-217ENST00000566126 H0Y858 1186 aa19.92■□□□□ 0.78
CLK3-217ENST00000566126 EFCAB14O75071 495 aa19.92■□□□□ 0.78
CLK3-217ENST00000566126 BCAR3O75815 825 aa19.92■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms