RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 SAMD3Q8N6K7 520 aa15.55■□□□□ 0.08
CLK3-216ENST00000564468 DNERQ8NFT8 737 aa15.55■□□□□ 0.08
CLK3-216ENST00000564468 MTMR8Q96EF0 704 aa15.55■□□□□ 0.08
CLK3-216ENST00000564468 SPC25Q9HBM1 224 aa15.55■□□□□ 0.08
CLK3-216ENST00000564468 MAP3K20Q9NYL2 800 aaKnown RBP15.55■□□□□ 0.08
CLK3-216ENST00000564468 SLC12A7Q9Y666 1083 aa15.55■□□□□ 0.08
CLK3-216ENST00000564468 EIF5BO60841 1220 aaKnown RBP15.54■□□□□ 0.08
CLK3-216ENST00000564468 DUSP11O75319 330 aaKnown RBP15.54■□□□□ 0.08
CLK3-216ENST00000564468 COL6A1P12109 1028 aa15.54■□□□□ 0.08
CLK3-216ENST00000564468 ALDH5A1P51649 535 aaPredicted RBP15.54■□□□□ 0.08
CLK3-216ENST00000564468 SGMS1Q86VZ5 419 aa15.54■□□□□ 0.08
CLK3-216ENST00000564468 MORC4Q8TE76 937 aa15.54■□□□□ 0.08
CLK3-216ENST00000564468 KCNB2Q92953 911 aa15.54■□□□□ 0.08
CLK3-216ENST00000564468 VTA1Q9NP79 307 aa15.54■□□□□ 0.08
CLK3-216ENST00000564468 KIAA1217Q5T5P2 1943 aa15.54■□□□□ 0.08
CLK3-216ENST00000564468 LRRC37A2A6NM11 1700 aa15.54■□□□□ 0.08
CLK3-216ENST00000564468 PNMA6FA0A0J9YX94 578 aa15.53■□□□□ 0.08
CLK3-216ENST00000564468 MYCNP04198 464 aaPredicted RBP15.53■□□□□ 0.08
CLK3-216ENST00000564468 PSMA5P28066 241 aa15.53■□□□□ 0.08
CLK3-216ENST00000564468 FGD1P98174 961 aa15.53■□□□□ 0.08
CLK3-216ENST00000564468 EXOSC10Q01780 885 aaKnown RBP15.53■□□□□ 0.08
CLK3-216ENST00000564468 LRRC41Q15345 812 aa15.53■□□□□ 0.08
CLK3-216ENST00000564468 CCDC144BQ3MJ40 725 aa15.53■□□□□ 0.08
CLK3-216ENST00000564468 GJC2Q5T442 439 aaPredicted RBP15.53■□□□□ 0.08
CLK3-216ENST00000564468 SLC30A10Q6XR72 485 aa15.53■□□□□ 0.08
CLK3-216ENST00000564468 HOMER1Q86YM7 354 aa15.53■□□□□ 0.08
CLK3-216ENST00000564468 RASEFQ8IZ41 740 aa15.53■□□□□ 0.08
CLK3-216ENST00000564468 LRCH3Q96II8 777 aa15.53■□□□□ 0.08
CLK3-216ENST00000564468 SPZ1Q9BXG8 430 aa15.53■□□□□ 0.08
CLK3-216ENST00000564468 SENP6Q9GZR1 1112 aaPredicted RBP15.53■□□□□ 0.08
CLK3-216ENST00000564468 PCDHA1Q9Y5I3 950 aa15.53■□□□□ 0.08
CLK3-216ENST00000564468 SOX1O00570 391 aaPredicted RBP15.52■□□□□ 0.08
CLK3-216ENST00000564468 TNFAIP2Q03169 654 aa15.52■□□□□ 0.08
CLK3-216ENST00000564468 ADCK5Q3MIX3 580 aa15.52■□□□□ 0.08
CLK3-216ENST00000564468 IQSEC1Q6DN90 963 aa15.52■□□□□ 0.08
CLK3-216ENST00000564468 BLOC1S2Q6QNY1 142 aa15.52■□□□□ 0.08
CLK3-216ENST00000564468 DEFB123Q8N688 67 aa15.52■□□□□ 0.08
CLK3-216ENST00000564468 RRP36Q96EU6 259 aaKnown RBP15.52■□□□□ 0.08
CLK3-216ENST00000564468 PIGSQ96S52 555 aa15.52■□□□□ 0.08
CLK3-216ENST00000564468 TSEN34Q9BSV6 310 aaKnown RBP15.52■□□□□ 0.08
CLK3-216ENST00000564468 LRRC2Q9BYS8 371 aa15.52■□□□□ 0.08
CLK3-216ENST00000564468 KATNBL1Q9H079 304 aa15.52■□□□□ 0.08
CLK3-216ENST00000564468 GPHNQ9NQX3 736 aaPredicted RBP15.52■□□□□ 0.08
CLK3-216ENST00000564468 SEC63Q9UGP8 760 aaKnown RBP15.52■□□□□ 0.08
CLK3-216ENST00000564468 ASTN1O14525 1302 aa15.51■□□□□ 0.07
CLK3-216ENST00000564468 CYTH3O43739 400 aa15.51■□□□□ 0.07
CLK3-216ENST00000564468 PGK1P00558 417 aa15.51■□□□□ 0.07
CLK3-216ENST00000564468 CFBP00751 764 aa15.51■□□□□ 0.07
CLK3-216ENST00000564468 PDE4DQ08499 809 aa15.51■□□□□ 0.07
CLK3-216ENST00000564468 NOL8Q76FK4 1167 aaKnown RBP15.51■□□□□ 0.07
CLK3-216ENST00000564468 FANCBQ8NB91 859 aa15.51■□□□□ 0.07
CLK3-216ENST00000564468 PCSK9Q8NBP7 692 aaKnown RBP15.51■□□□□ 0.07
CLK3-216ENST00000564468 NSUN6Q8TEA1 469 aaKnown RBP15.51■□□□□ 0.07
CLK3-216ENST00000564468 JAKMIP1Q96N16 626 aaKnown RBP15.51■□□□□ 0.07
CLK3-216ENST00000564468 MYL10Q9BUA6 226 aa15.51■□□□□ 0.07
CLK3-216ENST00000564468 RBM28Q9NW13 759 aaKnown RBP15.51■□□□□ 0.07
CLK3-216ENST00000564468 SNX14Q9Y5W7 946 aa15.51■□□□□ 0.07
CLK3-216ENST00000564468 SYNRGQ9UMZ2 1314 aa15.5■□□□□ 0.07
CLK3-216ENST00000564468 MOXD2PA6NHM9 499 aa15.5■□□□□ 0.07
CLK3-216ENST00000564468 ADAMTS4O75173 837 aa15.5■□□□□ 0.07
CLK3-216ENST00000564468 RCAN1P53805 252 aa15.5■□□□□ 0.07
CLK3-216ENST00000564468 GHRHRQ02643 423 aa15.5■□□□□ 0.07
CLK3-216ENST00000564468 PPP2R5BQ15173 497 aa15.5■□□□□ 0.07
CLK3-216ENST00000564468 APOA5Q6Q788 366 aa15.5■□□□□ 0.07
CLK3-216ENST00000564468 EEPD1Q7L9B9 569 aa15.5■□□□□ 0.07
CLK3-216ENST00000564468 C7orf61Q8IZ16 206 aa15.5■□□□□ 0.07
CLK3-216ENST00000564468 SYTL5Q8TDW5 730 aaPredicted RBP15.5■□□□□ 0.07
CLK3-216ENST00000564468 PURBQ96QR8 312 aaKnown RBP15.5■□□□□ 0.07
CLK3-216ENST00000564468 IWS1Q96ST2 819 aa15.5■□□□□ 0.07
CLK3-216ENST00000564468 GDF15Q99988 308 aa15.5■□□□□ 0.07
CLK3-216ENST00000564468 AP5M1Q9H0R1 490 aa15.5■□□□□ 0.07
CLK3-216ENST00000564468 PHF24Q9UPV7 400 aa15.5■□□□□ 0.07
CLK3-216ENST00000564468 Q9Y3F1 56 aa15.5■□□□□ 0.07
CLK3-216ENST00000564468 MYH7BA7E2Y1 1941 aa15.5■□□□□ 0.07
CLK3-216ENST00000564468 ZBTB43O43298 467 aa15.49■□□□□ 0.07
CLK3-216ENST00000564468 C6orf222P0C671 652 aaPredicted RBP15.49■□□□□ 0.07
CLK3-216ENST00000564468 EDNRBP24530 442 aa15.49■□□□□ 0.07
CLK3-216ENST00000564468 CST5P28325 142 aaPredicted RBP15.49■□□□□ 0.07
CLK3-216ENST00000564468 ADCYAP1R1P41586 468 aa15.49■□□□□ 0.07
CLK3-216ENST00000564468 HSD17B4P51659 736 aa15.49■□□□□ 0.07
CLK3-216ENST00000564468 GJA9P57773 515 aa15.49■□□□□ 0.07
CLK3-216ENST00000564468 LRIT3Q3SXY7 679 aa15.49■□□□□ 0.07
CLK3-216ENST00000564468 TAPT1Q6NXT6 567 aa15.49■□□□□ 0.07
CLK3-216ENST00000564468 MICU3Q86XE3 530 aa15.49■□□□□ 0.07
CLK3-216ENST00000564468 FBXO16Q8IX29 292 aaPredicted RBP15.49■□□□□ 0.07
CLK3-216ENST00000564468 KLHDC9Q8NEP7 349 aa15.49■□□□□ 0.07
CLK3-216ENST00000564468 TBC1D5Q92609 795 aa15.49■□□□□ 0.07
CLK3-216ENST00000564468 RMDN3Q96TC7 470 aa15.49■□□□□ 0.07
CLK3-216ENST00000564468 UPF3AQ9H1J1 476 aaKnown RBP15.49■□□□□ 0.07
CLK3-216ENST00000564468 STXBP5LQ9Y2K9 1186 aa15.49■□□□□ 0.07
CLK3-216ENST00000564468 CCDC196A0A1B0GTZ2 297 aa15.48■□□□□ 0.07
CLK3-216ENST00000564468 GCOM1H8Y6P7 765 aaPredicted RBP15.48■□□□□ 0.07
CLK3-216ENST00000564468 NKRFO15226 690 aaKnown RBP eCLIP15.48■□□□□ 0.07
CLK3-216ENST00000564468 ZEB2O60315 1214 aa15.48■□□□□ 0.07
CLK3-216ENST00000564468 PPP1R11O60927 126 aaPredicted RBP15.48■□□□□ 0.07
CLK3-216ENST00000564468 POLR2MP0CAP2 368 aa15.48■□□□□ 0.07
CLK3-216ENST00000564468 RXRAP19793 462 aa15.48■□□□□ 0.07
CLK3-216ENST00000564468 NKX3-2P78367 333 aa15.48■□□□□ 0.07
CLK3-216ENST00000564468 COL9A3Q14050 684 aaPredicted RBP15.48■□□□□ 0.07
CLK3-216ENST00000564468 LRRC26Q2I0M4 334 aa15.48■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms