RNA–Protein interactions for RNA: ENST00000563396.1

SMPD3-204, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 3

Gene SMPD3, Length 608 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-204ENST00000563396 TLK2Q86UE8 772 aa16.41■□□□□ 0.22
SMPD3-204ENST00000563396 STAG2Q8N3U4 1231 aa16.41■□□□□ 0.22
SMPD3-204ENST00000563396 TOX2Q96NM4 488 aa16.41■□□□□ 0.22
SMPD3-204ENST00000563396 STARD7Q9NQZ5 370 aa16.41■□□□□ 0.22
SMPD3-204ENST00000563396 PCDH10Q9P2E7 1040 aa16.41■□□□□ 0.22
SMPD3-204ENST00000563396 Q9Y3F1 56 aa16.41■□□□□ 0.22
SMPD3-204ENST00000563396 RBM47A0AV96 593 aaKnown RBP16.4■□□□□ 0.22
SMPD3-204ENST00000563396 SMPD1P17405 629 aa16.4■□□□□ 0.22
SMPD3-204ENST00000563396 CALML3P27482 149 aa16.4■□□□□ 0.22
SMPD3-204ENST00000563396 TLE2Q04725 743 aa16.4■□□□□ 0.22
SMPD3-204ENST00000563396 SART3Q15020 963 aaKnown RBP16.4■□□□□ 0.22
SMPD3-204ENST00000563396 LRIT3Q3SXY7 679 aa16.4■□□□□ 0.22
SMPD3-204ENST00000563396 IQSEC1Q6DN90 963 aa16.4■□□□□ 0.22
SMPD3-204ENST00000563396 SKAP1Q86WV1 359 aa16.4■□□□□ 0.22
SMPD3-204ENST00000563396 GLT1D1Q96MS3 346 aa16.4■□□□□ 0.22
SMPD3-204ENST00000563396 PRKAG2Q9UGJ0 569 aa16.4■□□□□ 0.22
SMPD3-204ENST00000563396 SCN10AQ9Y5Y9 1956 aa16.4■□□□□ 0.22
SMPD3-204ENST00000563396 ERICH2A1L162 156 aa16.39■□□□□ 0.21
SMPD3-204ENST00000563396 KLRF2D3W0D1 207 aa16.39■□□□□ 0.21
SMPD3-204ENST00000563396 SOX1O00570 391 aaPredicted RBP16.39■□□□□ 0.21
SMPD3-204ENST00000563396 OPLAHO14841 1288 aa16.39■□□□□ 0.21
SMPD3-204ENST00000563396 IFIT3O14879 490 aaKnown RBP16.39■□□□□ 0.21
SMPD3-204ENST00000563396 CLTBP09497 229 aa16.39■□□□□ 0.21
SMPD3-204ENST00000563396 MDM2Q00987 491 aaPredicted RBP16.39■□□□□ 0.21
SMPD3-204ENST00000563396 WTAPQ15007 396 aa16.39■□□□□ 0.21
SMPD3-204ENST00000563396 NECTIN1Q15223 517 aa16.39■□□□□ 0.21
SMPD3-204ENST00000563396 SLC35G1Q2M3R5 365 aa16.39■□□□□ 0.21
SMPD3-204ENST00000563396 DUSP28Q4G0W2 176 aa16.39■□□□□ 0.21
SMPD3-204ENST00000563396 FBXO11Q86XK2 927 aa16.39■□□□□ 0.21
SMPD3-204ENST00000563396 IGDCC4Q8TDY8 1250 aa16.39■□□□□ 0.21
SMPD3-204ENST00000563396 UBE2OQ9C0C9 1292 aaKnown RBP16.39■□□□□ 0.21
SMPD3-204ENST00000563396 SENP2Q9HC62 589 aa16.39■□□□□ 0.21
SMPD3-204ENST00000563396 PDGFCQ9NRA1 345 aa16.39■□□□□ 0.21
SMPD3-204ENST00000563396 MROH7Q68CQ1 1323 aa16.39■□□□□ 0.21
SMPD3-204ENST00000563396 A0A0U1RQG5 324 aaPredicted RBP16.38■□□□□ 0.21
SMPD3-204ENST00000563396 SLC27A2O14975 620 aa16.38■□□□□ 0.21
SMPD3-204ENST00000563396 ZBTB5O15062 677 aa16.38■□□□□ 0.21
SMPD3-204ENST00000563396 KIAA0355O15063 1070 aa16.38■□□□□ 0.21
SMPD3-204ENST00000563396 PPP1R11O60927 126 aaPredicted RBP16.38■□□□□ 0.21
SMPD3-204ENST00000563396 CDK7P50613 346 aa16.38■□□□□ 0.21
SMPD3-204ENST00000563396 GNASQ5JWF2 1037 aa16.38■□□□□ 0.21
SMPD3-204ENST00000563396 KIAA1211Q6ZU35 1233 aa16.38■□□□□ 0.21
SMPD3-204ENST00000563396 EEPD1Q7L9B9 569 aa16.38■□□□□ 0.21
SMPD3-204ENST00000563396 SH3RF1Q7Z6J0 888 aa16.38■□□□□ 0.21
SMPD3-204ENST00000563396 MCF2L2Q86YR7 1114 aa16.38■□□□□ 0.21
SMPD3-204ENST00000563396 MPHOSPH6Q99547 160 aaKnown RBP16.38■□□□□ 0.21
SMPD3-204ENST00000563396 MAP3K14Q99558 947 aa16.38■□□□□ 0.21
SMPD3-204ENST00000563396 LBHD1Q9BQE6 289 aaPredicted RBP16.38■□□□□ 0.21
SMPD3-204ENST00000563396 AMNQ9BXJ7 453 aa16.38■□□□□ 0.21
SMPD3-204ENST00000563396 RIOX1Q9H6W3 641 aa16.38■□□□□ 0.21
SMPD3-204ENST00000563396 LY9Q9HBG7 655 aa16.38■□□□□ 0.21
SMPD3-204ENST00000563396 COL20A1Q9P218 1284 aa16.38■□□□□ 0.21
SMPD3-204ENST00000563396 MRPL11Q9Y3B7 192 aaKnown RBP16.38■□□□□ 0.21
SMPD3-204ENST00000563396 LAMA2P24043 3122 aaKnown RBP16.38■□□□□ 0.21
SMPD3-204ENST00000563396 TRIM43BA6NCK2 446 aa16.37■□□□□ 0.21
SMPD3-204ENST00000563396 CYTH3O43739 400 aa16.37■□□□□ 0.21
SMPD3-204ENST00000563396 PQBP1O60828 265 aaKnown RBP16.37■□□□□ 0.21
SMPD3-204ENST00000563396 HSD17B4P51659 736 aa16.37■□□□□ 0.21
SMPD3-204ENST00000563396 FAAP100Q0VG06 881 aa16.37■□□□□ 0.21
SMPD3-204ENST00000563396 FSCN1Q16658 493 aaKnown RBP16.37■□□□□ 0.21
SMPD3-204ENST00000563396 TMEM67Q5HYA8 995 aa16.37■□□□□ 0.21
SMPD3-204ENST00000563396 TMEM63BQ5T3F8 832 aa16.37■□□□□ 0.21
SMPD3-204ENST00000563396 GPR153Q6NV75 609 aa16.37■□□□□ 0.21
SMPD3-204ENST00000563396 SLC43A3Q8NBI5 491 aa16.37■□□□□ 0.21
SMPD3-204ENST00000563396 SYTL5Q8TDW5 730 aaPredicted RBP16.37■□□□□ 0.21
SMPD3-204ENST00000563396 TRIM43Q96BQ3 446 aaPredicted RBP16.37■□□□□ 0.21
SMPD3-204ENST00000563396 ANO2Q9NQ90 1003 aa16.37■□□□□ 0.21
SMPD3-204ENST00000563396 PRDM5Q9NQX1 630 aaPredicted RBP16.37■□□□□ 0.21
SMPD3-204ENST00000563396 TBX21Q9UL17 535 aa16.37■□□□□ 0.21
SMPD3-204ENST00000563396 TANC1Q9C0D5 1861 aa16.37■□□□□ 0.21
SMPD3-204ENST00000563396 BAZ2BQ9UIF8 2168 aaKnown RBP16.36■□□□□ 0.21
SMPD3-204ENST00000563396 B4DLN1 442 aa16.36■□□□□ 0.21
SMPD3-204ENST00000563396 DHX16O60231 1041 aaKnown RBP16.36■□□□□ 0.21
SMPD3-204ENST00000563396 CABYRO75952 493 aa16.36■□□□□ 0.21
SMPD3-204ENST00000563396 DDAH1O94760 285 aa16.36■□□□□ 0.21
SMPD3-204ENST00000563396 PTGS1P23219 599 aa16.36■□□□□ 0.21
SMPD3-204ENST00000563396 MRPL12P52815 198 aaKnown RBP16.36■□□□□ 0.21
SMPD3-204ENST00000563396 BEX3Q00994 111 aa16.36■□□□□ 0.21
SMPD3-204ENST00000563396 PDE4DQ08499 809 aa16.36■□□□□ 0.21
SMPD3-204ENST00000563396 COL9A3Q14050 684 aaPredicted RBP16.36■□□□□ 0.21
SMPD3-204ENST00000563396 CREB3L3Q68CJ9 461 aa16.36■□□□□ 0.21
SMPD3-204ENST00000563396 CHST3Q7LGC8 479 aa16.36■□□□□ 0.21
SMPD3-204ENST00000563396 FAM126BQ8IXS8 530 aa16.36■□□□□ 0.21
SMPD3-204ENST00000563396 TMEM87BQ96K49 555 aa16.36■□□□□ 0.21
SMPD3-204ENST00000563396 WDR11Q9BZH6 1224 aa16.36■□□□□ 0.21
SMPD3-204ENST00000563396 ARVCFO00192 962 aa16.35■□□□□ 0.21
SMPD3-204ENST00000563396 SH2B2O14492 632 aaPredicted RBP16.35■□□□□ 0.21
SMPD3-204ENST00000563396 NKRFO15226 690 aaKnown RBP eCLIP16.35■□□□□ 0.21
SMPD3-204ENST00000563396 CDC45O75419 566 aa16.35■□□□□ 0.21
SMPD3-204ENST00000563396 ITGB8P26012 769 aa16.35■□□□□ 0.21
SMPD3-204ENST00000563396 MCM5P33992 734 aa16.35■□□□□ 0.21
SMPD3-204ENST00000563396 PPP2R5BQ15173 497 aa16.35■□□□□ 0.21
SMPD3-204ENST00000563396 NOL8Q76FK4 1167 aaKnown RBP16.35■□□□□ 0.21
SMPD3-204ENST00000563396 CATIPQ7Z7H3 387 aa16.35■□□□□ 0.21
SMPD3-204ENST00000563396 ZNF654Q8IZM8 581 aa16.35■□□□□ 0.21
SMPD3-204ENST00000563396 SAMD3Q8N6K7 520 aa16.35■□□□□ 0.21
SMPD3-204ENST00000563396 SCFD2Q8WU76 684 aa16.35■□□□□ 0.21
SMPD3-204ENST00000563396 TBC1D5Q92609 795 aa16.35■□□□□ 0.21
SMPD3-204ENST00000563396 LRCH3Q96II8 777 aa16.35■□□□□ 0.21
SMPD3-204ENST00000563396 SPZ1Q9BXG8 430 aa16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms