RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 TAL1P17542 331 aaPredicted RBP10.31□□□□□ -0.76
VPS39-205ENST00000562258 TMOD1P28289 359 aa10.31□□□□□ -0.76
VPS39-205ENST00000562258 HOXD10P28358 340 aa10.31□□□□□ -0.76
VPS39-205ENST00000562258 MTMR1Q13613 665 aa10.31□□□□□ -0.76
VPS39-205ENST00000562258 CTTNQ14247 550 aaKnown RBP10.31□□□□□ -0.76
VPS39-205ENST00000562258 TRMT44Q8IYL2 757 aaKnown RBP10.31□□□□□ -0.76
VPS39-205ENST00000562258 PIGOQ8TEQ8 1089 aa10.31□□□□□ -0.76
VPS39-205ENST00000562258 NYAP2Q9P242 653 aa10.31□□□□□ -0.76
VPS39-205ENST00000562258 PCDHA7Q9UN72 937 aa10.31□□□□□ -0.76
VPS39-205ENST00000562258 COL14A1Q05707 1796 aaKnown RBP10.31□□□□□ -0.76
VPS39-205ENST00000562258 WDR46O15213 610 aaKnown RBP10.31□□□□□ -0.76
VPS39-205ENST00000562258 COBLO75128 1261 aa10.31□□□□□ -0.76
VPS39-205ENST00000562258 CYP2C8P10632 490 aa10.31□□□□□ -0.76
VPS39-205ENST00000562258 TAF12Q16514 161 aa10.31□□□□□ -0.76
VPS39-205ENST00000562258 SLFN12Q8IYM2 578 aa10.31□□□□□ -0.76
VPS39-205ENST00000562258 IGDCC4Q8TDY8 1250 aa10.31□□□□□ -0.76
VPS39-205ENST00000562258 PARK7Q99497 189 aaKnown RBP10.31□□□□□ -0.76
VPS39-205ENST00000562258 KNDC1Q76NI1 1749 aa10.31□□□□□ -0.76
VPS39-205ENST00000562258 DYNC1LI2O43237 492 aaPredicted RBP10.31□□□□□ -0.76
VPS39-205ENST00000562258 C6orf222P0C671 652 aaPredicted RBP10.31□□□□□ -0.76
VPS39-205ENST00000562258 PFKFB1P16118 471 aa10.31□□□□□ -0.76
VPS39-205ENST00000562258 ARHGAP4P98171 946 aa10.31□□□□□ -0.76
VPS39-205ENST00000562258 PNOCQ13519 176 aa10.31□□□□□ -0.76
VPS39-205ENST00000562258 ARHGAP29Q52LW3 1261 aa10.31□□□□□ -0.76
VPS39-205ENST00000562258 FAM178BQ8IXR5 827 aa10.31□□□□□ -0.76
VPS39-205ENST00000562258 LPAR1Q92633 364 aa10.31□□□□□ -0.76
VPS39-205ENST00000562258 SYMPKQ92797 1274 aaKnown RBP10.31□□□□□ -0.76
VPS39-205ENST00000562258 CSRNP2Q9H175 543 aa10.31□□□□□ -0.76
VPS39-205ENST00000562258 VPS16Q9H269 839 aa10.31□□□□□ -0.76
VPS39-205ENST00000562258 SYNCQ9H7C4 482 aa10.31□□□□□ -0.76
VPS39-205ENST00000562258 LTN1O94822 1766 aa10.31□□□□□ -0.76
VPS39-205ENST00000562258 YEATS4O95619 227 aa10.3□□□□□ -0.76
VPS39-205ENST00000562258 SRGAP2CP0DJJ0 459 aa10.3□□□□□ -0.76
VPS39-205ENST00000562258 EVX2Q03828 476 aa10.3□□□□□ -0.76
VPS39-205ENST00000562258 TBC1D8BQ0IIM8 1120 aa10.3□□□□□ -0.76
VPS39-205ENST00000562258 GRM4Q14833 912 aa10.3□□□□□ -0.76
VPS39-205ENST00000562258 ATL3Q6DD88 541 aa10.3□□□□□ -0.76
VPS39-205ENST00000562258 CCDC127Q96BQ5 260 aa10.3□□□□□ -0.76
VPS39-205ENST00000562258 NT5C3AQ9H0P0 336 aa10.3□□□□□ -0.76
VPS39-205ENST00000562258 POTEMA6NI47 508 aa10.3□□□□□ -0.76
VPS39-205ENST00000562258 SFI1A8K8P3 1242 aa10.3□□□□□ -0.76
VPS39-205ENST00000562258 PGK2P07205 417 aa10.3□□□□□ -0.76
VPS39-205ENST00000562258 CYP2J2P51589 502 aa10.3□□□□□ -0.76
VPS39-205ENST00000562258 BACE1P56817 501 aa10.3□□□□□ -0.76
VPS39-205ENST00000562258 ANTXR2P58335 489 aa10.3□□□□□ -0.76
VPS39-205ENST00000562258 ODR4Q5SWX8 454 aa10.3□□□□□ -0.76
VPS39-205ENST00000562258 LUZP1Q86V48 1076 aa10.3□□□□□ -0.76
VPS39-205ENST00000562258 SESTD1Q86VW0 696 aa10.3□□□□□ -0.76
VPS39-205ENST00000562258 FAM114A1Q8IWE2 563 aa10.3□□□□□ -0.76
VPS39-205ENST00000562258 ATP6V0A1Q93050 837 aa10.3□□□□□ -0.76
VPS39-205ENST00000562258 SLC39A2Q9NP94 309 aa10.3□□□□□ -0.76
VPS39-205ENST00000562258 LARSQ9P2J5 1176 aaKnown RBP10.3□□□□□ -0.76
VPS39-205ENST00000562258 ANKFY1Q9P2R3 1169 aa10.3□□□□□ -0.76
VPS39-205ENST00000562258 AKR1B10O60218 316 aa10.3□□□□□ -0.76
VPS39-205ENST00000562258 RAPGEF1Q13905 1077 aa10.3□□□□□ -0.76
VPS39-205ENST00000562258 SPA17Q15506 151 aa10.3□□□□□ -0.76
VPS39-205ENST00000562258 PFKFB3Q16875 520 aaPredicted RBP10.3□□□□□ -0.76
VPS39-205ENST00000562258 VPS36Q86VN1 386 aa10.3□□□□□ -0.76
VPS39-205ENST00000562258 GPRC5AQ8NFJ5 357 aa10.3□□□□□ -0.76
VPS39-205ENST00000562258 GJA10Q969M2 543 aa10.3□□□□□ -0.76
VPS39-205ENST00000562258 CDHR1Q96JP9 859 aa10.3□□□□□ -0.76
VPS39-205ENST00000562258 CLMNQ96JQ2 1002 aa10.3□□□□□ -0.76
VPS39-205ENST00000562258 NLRP4Q96MN2 994 aa10.3□□□□□ -0.76
VPS39-205ENST00000562258 FOXP1Q9H334 677 aaPredicted RBP10.3□□□□□ -0.76
VPS39-205ENST00000562258 TRMT1Q9NXH9 659 aaKnown RBP10.3□□□□□ -0.76
VPS39-205ENST00000562258 TSKSQ9UJT2 592 aa10.3□□□□□ -0.76
VPS39-205ENST00000562258 FRMD4BQ9Y2L6 1034 aa10.3□□□□□ -0.76
VPS39-205ENST00000562258 RABGAP1Q9Y3P9 1069 aa10.3□□□□□ -0.76
VPS39-205ENST00000562258 ZNF142P52746 1687 aaPredicted RBP10.3□□□□□ -0.76
VPS39-205ENST00000562258 RPL13P26373 211 aaKnown RBP10.29□□□□□ -0.76
VPS39-205ENST00000562258 CSGALNACT2Q8N6G5 542 aa10.29□□□□□ -0.76
VPS39-205ENST00000562258 RGS22Q8NE09 1264 aa10.29□□□□□ -0.76
VPS39-205ENST00000562258 CTNND2Q9UQB3 1225 aa10.29□□□□□ -0.76
VPS39-205ENST00000562258 MON2Q7Z3U7 1717 aa10.29□□□□□ -0.76
VPS39-205ENST00000562258 TDP2O95551 362 aa10.29□□□□□ -0.76
VPS39-205ENST00000562258 TXNP10599 105 aaKnown RBP10.29□□□□□ -0.76
VPS39-205ENST00000562258 NOP2P46087 812 aaKnown RBP10.29□□□□□ -0.76
VPS39-205ENST00000562258 OSTNP61366 133 aa10.29□□□□□ -0.76
VPS39-205ENST00000562258 MCTP2Q6DN12 878 aa10.29□□□□□ -0.76
VPS39-205ENST00000562258 USP50Q70EL3 339 aaPredicted RBP10.29□□□□□ -0.76
VPS39-205ENST00000562258 FAM83AQ86UY5 434 aa10.29□□□□□ -0.76
VPS39-205ENST00000562258 GRAMD1CQ8IYS0 662 aa10.29□□□□□ -0.76
VPS39-205ENST00000562258 MNS1Q8NEH6 495 aa10.29□□□□□ -0.76
VPS39-205ENST00000562258 EPSTI1Q96J88 318 aa10.29□□□□□ -0.76
VPS39-205ENST00000562258 IRF6O14896 467 aa10.29□□□□□ -0.76
VPS39-205ENST00000562258 NR1I2O75469 434 aa10.29□□□□□ -0.76
VPS39-205ENST00000562258 ERLIN2O94905 339 aa10.29□□□□□ -0.76
VPS39-205ENST00000562258 TNNI1P19237 187 aa10.29□□□□□ -0.76
VPS39-205ENST00000562258 FAM160B1Q5W0V3 765 aa10.29□□□□□ -0.76
VPS39-205ENST00000562258 CCDC70Q6NSX1 233 aa10.29□□□□□ -0.76
VPS39-205ENST00000562258 PLCD3Q8N3E9 789 aa10.29□□□□□ -0.76
VPS39-205ENST00000562258 FAM198AQ9UFP1 575 aa10.29□□□□□ -0.76
VPS39-205ENST00000562258 PEAK1Q9H792 1746 aa10.29□□□□□ -0.76
VPS39-205ENST00000562258 CETN3O15182 167 aa10.29□□□□□ -0.76
VPS39-205ENST00000562258 POSTNQ15063 836 aa10.29□□□□□ -0.76
VPS39-205ENST00000562258 CDAN1Q8IWY9 1227 aa10.29□□□□□ -0.76
VPS39-205ENST00000562258 BHMT2Q9H2M3 363 aa10.29□□□□□ -0.76
VPS39-205ENST00000562258 MRC1P22897 1456 aa10.28□□□□□ -0.76
VPS39-205ENST00000562258 FAM205CA6NFA0 338 aa10.28□□□□□ -0.76
VPS39-205ENST00000562258 GTF2A2P52657 109 aa10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms