RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 CALML3P27482 149 aa11.59□□□□□ -0.55
USP3-216ENST00000559873 GNA11P29992 359 aa11.59□□□□□ -0.55
USP3-216ENST00000559873 ADCY7P51828 1080 aa11.59□□□□□ -0.55
USP3-216ENST00000559873 RPS6P62753 249 aaKnown RBP11.59□□□□□ -0.55
USP3-216ENST00000559873 GHRHRQ02643 423 aa11.59□□□□□ -0.55
USP3-216ENST00000559873 PWP2Q15269 919 aaKnown RBP11.59□□□□□ -0.55
USP3-216ENST00000559873 MCTP2Q6DN12 878 aa11.59□□□□□ -0.55
USP3-216ENST00000559873 MSL3Q8N5Y2 521 aaKnown RBP11.59□□□□□ -0.55
USP3-216ENST00000559873 FAM184AQ8NB25 1140 aa11.59□□□□□ -0.55
USP3-216ENST00000559873 NSUN7Q8NE18 718 aaKnown RBP11.59□□□□□ -0.55
USP3-216ENST00000559873 SMARCC2Q8TAQ2 1214 aa11.59□□□□□ -0.55
USP3-216ENST00000559873 BICD2Q8TD16 824 aa11.59□□□□□ -0.55
USP3-216ENST00000559873 PXYLP1Q8TE99 480 aa11.59□□□□□ -0.55
USP3-216ENST00000559873 CLEC4DQ8WXI8 215 aa11.59□□□□□ -0.55
USP3-216ENST00000559873 SNX21Q969T3 373 aa11.59□□□□□ -0.55
USP3-216ENST00000559873 EHMT1Q9H9B1 1298 aa11.59□□□□□ -0.55
USP3-216ENST00000559873 C6orf50Q9HD87 102 aa11.59□□□□□ -0.55
USP3-216ENST00000559873 SH3GLB2Q9NR46 395 aa11.59□□□□□ -0.55
USP3-216ENST00000559873 CYP39A1Q9NYL5 469 aa11.59□□□□□ -0.55
USP3-216ENST00000559873 ORC3Q9UBD5 711 aaPredicted RBP11.59□□□□□ -0.55
USP3-216ENST00000559873 GJD2Q9UKL4 321 aa11.59□□□□□ -0.55
USP3-216ENST00000559873 ESYT2A0FGR8 921 aa11.58□□□□□ -0.56
USP3-216ENST00000559873 SPDYE3A6NKU9 549 aa11.58□□□□□ -0.56
USP3-216ENST00000559873 STXBP3O00186 592 aa11.58□□□□□ -0.56
USP3-216ENST00000559873 ADCY3O60266 1144 aa11.58□□□□□ -0.56
USP3-216ENST00000559873 CD2BP2O95400 341 aaKnown RBP11.58□□□□□ -0.56
USP3-216ENST00000559873 HMGCRP04035 888 aa11.58□□□□□ -0.56
USP3-216ENST00000559873 PGK2P07205 417 aa11.58□□□□□ -0.56
USP3-216ENST00000559873 UBXN2AP68543 259 aa11.58□□□□□ -0.56
USP3-216ENST00000559873 BAATQ14032 418 aaPredicted RBP11.58□□□□□ -0.56
USP3-216ENST00000559873 TRIM29Q14134 588 aa11.58□□□□□ -0.56
USP3-216ENST00000559873 SLC9C1Q4G0N8 1177 aa11.58□□□□□ -0.56
USP3-216ENST00000559873 MFSD14CQ5VZR4 134 aa11.58□□□□□ -0.56
USP3-216ENST00000559873 OLFML2BQ68BL8 750 aa11.58□□□□□ -0.56
USP3-216ENST00000559873 SLC30A10Q6XR72 485 aa11.58□□□□□ -0.56
USP3-216ENST00000559873 ZNF467Q7Z7K2 595 aaPredicted RBP11.58□□□□□ -0.56
USP3-216ENST00000559873 DNERQ8NFT8 737 aa11.58□□□□□ -0.56
USP3-216ENST00000559873 USP6NLQ92738 828 aa11.58□□□□□ -0.56
USP3-216ENST00000559873 PSTPIP2Q9H939 334 aa11.58□□□□□ -0.56
USP3-216ENST00000559873 BRMS1Q9HCU9 246 aa11.58□□□□□ -0.56
USP3-216ENST00000559873 GABRQQ9UN88 632 aa11.58□□□□□ -0.56
USP3-216ENST00000559873 PTCH2Q9Y6C5 1203 aa11.58□□□□□ -0.56
USP3-216ENST00000559873 DNAJC25-GNG10A0A024R161 153 aa11.57□□□□□ -0.56
USP3-216ENST00000559873 SMCO2A6NFE2 343 aa11.57□□□□□ -0.56
USP3-216ENST00000559873 ASB14A6NK59 587 aa11.57□□□□□ -0.56
USP3-216ENST00000559873 PIK3CDO00329 1044 aa11.57□□□□□ -0.56
USP3-216ENST00000559873 PPFIA3O75145 1194 aa11.57□□□□□ -0.56
USP3-216ENST00000559873 CTDNEP1O95476 244 aa11.57□□□□□ -0.56
USP3-216ENST00000559873 HSP90AA1P07900 732 aaKnown RBP11.57□□□□□ -0.56
USP3-216ENST00000559873 GRK4P32298 578 aa11.57□□□□□ -0.56
USP3-216ENST00000559873 HSD17B4P51659 736 aa11.57□□□□□ -0.56
USP3-216ENST00000559873 AP3B2Q13367 1082 aa11.57□□□□□ -0.56
USP3-216ENST00000559873 BECN1Q14457 450 aa11.57□□□□□ -0.56
USP3-216ENST00000559873 PKN1Q16512 942 aa11.57□□□□□ -0.56
USP3-216ENST00000559873 ZNF792Q3KQV3 632 aa11.57□□□□□ -0.56
USP3-216ENST00000559873 GALNT17Q6IS24 598 aa11.57□□□□□ -0.56
USP3-216ENST00000559873 REXO1Q8N1G1 1221 aaKnown RBP11.57□□□□□ -0.56
USP3-216ENST00000559873 FAM133AQ8N9E0 248 aa11.57□□□□□ -0.56
USP3-216ENST00000559873 SYTL5Q8TDW5 730 aaPredicted RBP11.57□□□□□ -0.56
USP3-216ENST00000559873 MAML3Q96JK9 1138 aa11.57□□□□□ -0.56
USP3-216ENST00000559873 ALG1Q9BT22 464 aa11.57□□□□□ -0.56
USP3-216ENST00000559873 RIC8AQ9NPQ8 531 aa11.57□□□□□ -0.56
USP3-216ENST00000559873 CNPY2Q9Y2B0 182 aa11.57□□□□□ -0.56
USP3-216ENST00000559873 SYNGAP1Q96PV0 1343 aa11.57□□□□□ -0.56
USP3-216ENST00000559873 COBLO75128 1261 aa11.56□□□□□ -0.56
USP3-216ENST00000559873 FOSP01100 380 aaPredicted RBP11.56□□□□□ -0.56
USP3-216ENST00000559873 NLRP5P59047 1200 aa11.56□□□□□ -0.56
USP3-216ENST00000559873 CAP1Q01518 475 aa11.56□□□□□ -0.56
USP3-216ENST00000559873 ST3GAL1Q11201 340 aa11.56□□□□□ -0.56
USP3-216ENST00000559873 NSUN6Q8TEA1 469 aaKnown RBP11.56□□□□□ -0.56
USP3-216ENST00000559873 TINF2Q9BSI4 451 aa11.56□□□□□ -0.56
USP3-216ENST00000559873 ZMYND12Q9H0C1 365 aa11.56□□□□□ -0.56
USP3-216ENST00000559873 VPS54Q9P1Q0 977 aa11.56□□□□□ -0.56
USP3-216ENST00000559873 BIN2Q9UBW5 565 aaPredicted RBP11.56□□□□□ -0.56
USP3-216ENST00000559873 NRBP1Q9UHY1 535 aa11.56□□□□□ -0.56
USP3-216ENST00000559873 SMC3Q9UQE7 1217 aa11.56□□□□□ -0.56
USP3-216ENST00000559873 OPLAHO14841 1288 aa11.55□□□□□ -0.56
USP3-216ENST00000559873 JAK2O60674 1132 aa11.55□□□□□ -0.56
USP3-216ENST00000559873 HOXA13P31271 388 aaPredicted RBP11.55□□□□□ -0.56
USP3-216ENST00000559873 ALDH5A1P51649 535 aaPredicted RBP11.55□□□□□ -0.56
USP3-216ENST00000559873 PDE4DQ08499 809 aa11.55□□□□□ -0.56
USP3-216ENST00000559873 SAFBQ15424 915 aaKnown RBP eCLIP11.55□□□□□ -0.56
USP3-216ENST00000559873 ARHGEF16Q5VV41 709 aa11.55□□□□□ -0.56
USP3-216ENST00000559873 TYW1BQ6NUM6 668 aa11.55□□□□□ -0.56
USP3-216ENST00000559873 MAMDC4Q6UXC1 1216 aa11.55□□□□□ -0.56
USP3-216ENST00000559873 TRIB2Q92519 343 aa11.55□□□□□ -0.56
USP3-216ENST00000559873 INTS4Q96HW7 963 aaKnown RBP11.55□□□□□ -0.56
USP3-216ENST00000559873 IWS1Q96ST2 819 aa11.55□□□□□ -0.56
USP3-216ENST00000559873 RMDN3Q96TC7 470 aa11.55□□□□□ -0.56
USP3-216ENST00000559873 DOCK3Q8IZD9 2030 aa11.55□□□□□ -0.56
USP3-216ENST00000559873 INHAP05111 366 aa11.54□□□□□ -0.56
USP3-216ENST00000559873 ELNP15502 786 aa11.54□□□□□ -0.56
USP3-216ENST00000559873 PDCP20941 246 aa11.54□□□□□ -0.56
USP3-216ENST00000559873 CNTN2Q02246 1040 aa11.54□□□□□ -0.56
USP3-216ENST00000559873 CUL4AQ13619 759 aa11.54□□□□□ -0.56
USP3-216ENST00000559873 USP17L6PQ6QN14 398 aa11.54□□□□□ -0.56
USP3-216ENST00000559873 ARMCX2Q7L311 632 aa11.54□□□□□ -0.56
USP3-216ENST00000559873 FCHSD1Q86WN1 690 aa11.54□□□□□ -0.56
USP3-216ENST00000559873 DAGLBQ8NCG7 672 aa11.54□□□□□ -0.56
USP3-216ENST00000559873 NPLOC4Q8TAT6 608 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 80.1 ms