RNA–Protein interactions for RNA: ENST00000558989.1

SPG11-214, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 1,816 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-214ENST00000558989 RXRAP19793 462 aa11.25□□□□□ -0.61
SPG11-214ENST00000558989 NECTIN1Q15223 517 aa11.25□□□□□ -0.61
SPG11-214ENST00000558989 CDC37Q16543 378 aaPredicted RBP11.25□□□□□ -0.61
SPG11-214ENST00000558989 GPATCH4Q5T3I0 446 aaKnown RBP11.25□□□□□ -0.61
SPG11-214ENST00000558989 OLFML2BQ68BL8 750 aa11.25□□□□□ -0.61
SPG11-214ENST00000558989 POTEHQ6S545 545 aa11.25□□□□□ -0.61
SPG11-214ENST00000558989 BTNL9Q6UXG8 535 aa11.25□□□□□ -0.61
SPG11-214ENST00000558989 NFXL1Q6ZNB6 911 aa11.25□□□□□ -0.61
SPG11-214ENST00000558989 NOL8Q76FK4 1167 aaKnown RBP11.25□□□□□ -0.61
SPG11-214ENST00000558989 CCDC144CPQ8IYA2 1237 aa11.25□□□□□ -0.61
SPG11-214ENST00000558989 ANKS1AQ92625 1134 aa11.25□□□□□ -0.61
SPG11-214ENST00000558989 ZHX1Q9UKY1 873 aaPredicted RBP11.25□□□□□ -0.61
SPG11-214ENST00000558989 CALML3P27482 149 aa11.24□□□□□ -0.61
SPG11-214ENST00000558989 EEPD1Q7L9B9 569 aa11.24□□□□□ -0.61
SPG11-214ENST00000558989 HOMER1Q86YM7 354 aa11.24□□□□□ -0.61
SPG11-214ENST00000558989 RASEFQ8IZ41 740 aa11.24□□□□□ -0.61
SPG11-214ENST00000558989 DDX20Q9UHI6 824 aaKnown RBP11.24□□□□□ -0.61
SPG11-214ENST00000558989 KLRF2D3W0D1 207 aa11.23□□□□□ -0.61
SPG11-214ENST00000558989 CPA1P15085 419 aa11.23□□□□□ -0.61
SPG11-214ENST00000558989 MCM5P33992 734 aa11.23□□□□□ -0.61
SPG11-214ENST00000558989 BAATQ14032 418 aaPredicted RBP11.23□□□□□ -0.61
SPG11-214ENST00000558989 QRICH1Q2TAL8 776 aa11.23□□□□□ -0.61
SPG11-214ENST00000558989 ADCK5Q3MIX3 580 aa11.23□□□□□ -0.61
SPG11-214ENST00000558989 ASPRV1Q53RT3 343 aa11.23□□□□□ -0.61
SPG11-214ENST00000558989 GJC2Q5T442 439 aaPredicted RBP11.23□□□□□ -0.61
SPG11-214ENST00000558989 RNF20Q5VTR2 975 aa11.23□□□□□ -0.61
SPG11-214ENST00000558989 LHX8Q68G74 356 aa11.23□□□□□ -0.61
SPG11-214ENST00000558989 IGDCC4Q8TDY8 1250 aa11.23□□□□□ -0.61
SPG11-214ENST00000558989 MAD2L2Q9UI95 211 aa11.23□□□□□ -0.61
SPG11-214ENST00000558989 CNPY2Q9Y2B0 182 aa11.23□□□□□ -0.61
SPG11-214ENST00000558989 DNAJC25-GNG10A0A024R161 153 aa11.23□□□□□ -0.61
SPG11-214ENST00000558989 SOWAHBA6NEL2 793 aa11.23□□□□□ -0.61
SPG11-214ENST00000558989 TKFCQ3LXA3 575 aa11.23□□□□□ -0.61
SPG11-214ENST00000558989 SLC30A10Q6XR72 485 aa11.23□□□□□ -0.61
SPG11-214ENST00000558989 CATIPQ7Z7H3 387 aa11.23□□□□□ -0.61
SPG11-214ENST00000558989 FGD4Q96M96 766 aa11.23□□□□□ -0.61
SPG11-214ENST00000558989 VRTNQ9H8Y1 702 aa11.23□□□□□ -0.61
SPG11-214ENST00000558989 JMJD4Q9H9V9 463 aa11.23□□□□□ -0.61
SPG11-214ENST00000558989 LY9Q9HBG7 655 aa11.23□□□□□ -0.61
SPG11-214ENST00000558989 CYP39A1Q9NYL5 469 aa11.23□□□□□ -0.61
SPG11-214ENST00000558989 NAP1L2Q9ULW6 460 aaPredicted RBP11.23□□□□□ -0.61
SPG11-214ENST00000558989 CCDC69A6NI79 296 aa11.22□□□□□ -0.61
SPG11-214ENST00000558989 SNAI1O95863 264 aaPredicted RBP11.22□□□□□ -0.61
SPG11-214ENST00000558989 NT5C2P49902 561 aa11.22□□□□□ -0.61
SPG11-214ENST00000558989 PDAP1Q13442 181 aaKnown RBP11.22□□□□□ -0.61
SPG11-214ENST00000558989 GRM4Q14833 912 aa11.22□□□□□ -0.61
SPG11-214ENST00000558989 ERICH6BQ5W0A0 696 aa11.22□□□□□ -0.61
SPG11-214ENST00000558989 ARMCX2Q7L311 632 aa11.22□□□□□ -0.61
SPG11-214ENST00000558989 NECAB2Q7Z6G3 386 aa11.22□□□□□ -0.61
SPG11-214ENST00000558989 ZNF654Q8IZM8 581 aa11.22□□□□□ -0.61
SPG11-214ENST00000558989 CMTR1Q8N1G2 835 aaKnown RBP11.22□□□□□ -0.61
SPG11-214ENST00000558989 FBXO22Q8NEZ5 403 aa11.22□□□□□ -0.61
SPG11-214ENST00000558989 TBC1D5Q92609 795 aa11.22□□□□□ -0.61
SPG11-214ENST00000558989 NEK1Q96PY6 1258 aa11.22□□□□□ -0.61
SPG11-214ENST00000558989 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.22□□□□□ -0.61
SPG11-214ENST00000558989 OGDHLQ9ULD0 1010 aa11.22□□□□□ -0.61
SPG11-214ENST00000558989 DIS3Q9Y2L1 958 aaKnown RBP11.22□□□□□ -0.61
SPG11-214ENST00000558989 MYH7BA7E2Y1 1941 aa11.22□□□□□ -0.61
SPG11-214ENST00000558989 PFASO15067 1338 aa11.21□□□□□ -0.61
SPG11-214ENST00000558989 SH2B2O14492 632 aaPredicted RBP11.21□□□□□ -0.61
SPG11-214ENST00000558989 SEPT4O43236 478 aa11.21□□□□□ -0.61
SPG11-214ENST00000558989 PGK1P00558 417 aa11.21□□□□□ -0.61
SPG11-214ENST00000558989 PTGS1P23219 599 aa11.21□□□□□ -0.61
SPG11-214ENST00000558989 MNX1P50219 401 aaPredicted RBP11.21□□□□□ -0.61
SPG11-214ENST00000558989 ATN1P54259 1190 aaPredicted RBP11.21□□□□□ -0.61
SPG11-214ENST00000558989 RNF207Q6ZRF8 634 aa11.21□□□□□ -0.61
SPG11-214ENST00000558989 FBXO11Q86XK2 927 aa11.21□□□□□ -0.61
SPG11-214ENST00000558989 FERMT2Q96AC1 680 aa11.21□□□□□ -0.61
SPG11-214ENST00000558989 PIGSQ96S52 555 aa11.21□□□□□ -0.61
SPG11-214ENST00000558989 HTATIP2Q9BUP3 242 aa11.21□□□□□ -0.61
SPG11-214ENST00000558989 SENP6Q9GZR1 1112 aaPredicted RBP11.21□□□□□ -0.61
SPG11-214ENST00000558989 C11orf49Q9H6J7 331 aa11.21□□□□□ -0.61
SPG11-214ENST00000558989 PRDM16Q9HAZ2 1276 aa11.21□□□□□ -0.61
SPG11-214ENST00000558989 LRRC37A2A6NM11 1700 aa11.21□□□□□ -0.61
SPG11-214ENST00000558989 ASTN1O14525 1302 aa11.21□□□□□ -0.62
SPG11-214ENST00000558989 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP11.21□□□□□ -0.62
SPG11-214ENST00000558989 PALM3A6NDB9 673 aaPredicted RBP11.21□□□□□ -0.62
SPG11-214ENST00000558989 IGHA2P01877 340 aa11.21□□□□□ -0.62
SPG11-214ENST00000558989 ZNF865P0CJ78 1059 aaPredicted RBP11.21□□□□□ -0.62
SPG11-214ENST00000558989 IRX5P78411 483 aaPredicted RBP11.21□□□□□ -0.62
SPG11-214ENST00000558989 SLC35G1Q2M3R5 365 aa11.21□□□□□ -0.62
SPG11-214ENST00000558989 UBE2Q1Q7Z7E8 422 aa11.21□□□□□ -0.62
SPG11-214ENST00000558989 ZNF467Q7Z7K2 595 aaPredicted RBP11.21□□□□□ -0.62
SPG11-214ENST00000558989 FBXO16Q8IX29 292 aaPredicted RBP11.21□□□□□ -0.62
SPG11-214ENST00000558989 FAM133AQ8N9E0 248 aa11.21□□□□□ -0.62
SPG11-214ENST00000558989 CLEC4DQ8WXI8 215 aa11.21□□□□□ -0.62
SPG11-214ENST00000558989 hCG_1642624A0A1W2PR95 340 aa11.2□□□□□ -0.62
SPG11-214ENST00000558989 EVI5O60447 810 aa11.2□□□□□ -0.62
SPG11-214ENST00000558989 RARBP10826 455 aa11.2□□□□□ -0.62
SPG11-214ENST00000558989 ZNF16P17020 682 aaPredicted RBP11.2□□□□□ -0.62
SPG11-214ENST00000558989 RPS6P62753 249 aaKnown RBP11.2□□□□□ -0.62
SPG11-214ENST00000558989 FGD1P98174 961 aa11.2□□□□□ -0.62
SPG11-214ENST00000558989 TROAPQ12815 778 aa11.2□□□□□ -0.62
SPG11-214ENST00000558989 ACVR2BQ13705 512 aa11.2□□□□□ -0.62
SPG11-214ENST00000558989 MICU3Q86XE3 530 aa11.2□□□□□ -0.62
SPG11-214ENST00000558989 C7orf61Q8IZ16 206 aa11.2□□□□□ -0.62
SPG11-214ENST00000558989 CTCFLQ8NI51 663 aaPredicted RBP11.2□□□□□ -0.62
SPG11-214ENST00000558989 JAKMIP1Q96N16 626 aaKnown RBP11.2□□□□□ -0.62
SPG11-214ENST00000558989 XPNPEP3Q9NQH7 507 aa11.2□□□□□ -0.62
SPG11-214ENST00000558989 KIAA1217Q5T5P2 1943 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms