RNA–Protein interactions for RNA: ENST00000557626.5

TMEM260-215, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 1,262 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-215ENST00000557626 NOD1Q9Y239 953 aa16.05■□□□□ 0.16
TMEM260-215ENST00000557626 MICAL3Q7RTP6 2002 aa16.04■□□□□ 0.16
TMEM260-215ENST00000557626 SMPD1P17405 629 aa16.04■□□□□ 0.16
TMEM260-215ENST00000557626 ICAM3P32942 547 aa16.04■□□□□ 0.16
TMEM260-215ENST00000557626 DYNLL1P63167 89 aaKnown RBP16.04■□□□□ 0.16
TMEM260-215ENST00000557626 PTPN21Q16825 1174 aa16.04■□□□□ 0.16
TMEM260-215ENST00000557626 GORABQ5T7V8 394 aa16.04■□□□□ 0.16
TMEM260-215ENST00000557626 ANKRD35Q8N283 1001 aa16.04■□□□□ 0.16
TMEM260-215ENST00000557626 POLR3EQ9NVU0 708 aa16.04■□□□□ 0.16
TMEM260-215ENST00000557626 EYA4O95677 639 aa16.03■□□□□ 0.16
TMEM260-215ENST00000557626 SLC4A3P48751 1232 aa16.03■□□□□ 0.16
TMEM260-215ENST00000557626 EXOSC9Q06265 439 aaKnown RBP16.03■□□□□ 0.16
TMEM260-215ENST00000557626 WDR63Q8IWG1 891 aa16.03■□□□□ 0.16
TMEM260-215ENST00000557626 CCDC155Q8N6L0 562 aa16.03■□□□□ 0.16
TMEM260-215ENST00000557626 USP44Q9H0E7 712 aa16.03■□□□□ 0.16
TMEM260-215ENST00000557626 IGFLR1Q9H665 355 aa16.03■□□□□ 0.16
TMEM260-215ENST00000557626 PA2G4Q9UQ80 394 aaKnown RBP16.03■□□□□ 0.16
TMEM260-215ENST00000557626 AKAP2Q9Y2D5 859 aa16.03■□□□□ 0.16
TMEM260-215ENST00000557626 TMX2Q9Y320 296 aa16.03■□□□□ 0.16
TMEM260-215ENST00000557626 RIPK3Q9Y572 518 aa16.03■□□□□ 0.16
TMEM260-215ENST00000557626 SCN10AQ9Y5Y9 1956 aa16.03■□□□□ 0.16
TMEM260-215ENST00000557626 IL16Q14005 1332 aa16.02■□□□□ 0.16
TMEM260-215ENST00000557626 RALGAPA2Q2PPJ7 1873 aa16.02■□□□□ 0.16
TMEM260-215ENST00000557626 ARID4AP29374 1257 aaPredicted RBP16.02■□□□□ 0.16
TMEM260-215ENST00000557626 NDUFV1P49821 464 aa16.02■□□□□ 0.16
TMEM260-215ENST00000557626 ZBTB33Q86T24 672 aa16.02■□□□□ 0.16
TMEM260-215ENST00000557626 TMEM192Q8IY95 271 aa16.02■□□□□ 0.16
TMEM260-215ENST00000557626 TRMT2AQ8IZ69 625 aaKnown RBP16.02■□□□□ 0.16
TMEM260-215ENST00000557626 SP7Q8TDD2 431 aaPredicted RBP16.02■□□□□ 0.16
TMEM260-215ENST00000557626 AFAP1L1Q8TED9 768 aa16.02■□□□□ 0.16
TMEM260-215ENST00000557626 CHAMP1Q96JM3 812 aa16.02■□□□□ 0.16
TMEM260-215ENST00000557626 RPGRIP1Q96KN7 1286 aa16.02■□□□□ 0.16
TMEM260-215ENST00000557626 NEUROD6Q96NK8 337 aa16.02■□□□□ 0.16
TMEM260-215ENST00000557626 HINFPQ9BQA5 517 aa16.02■□□□□ 0.16
TMEM260-215ENST00000557626 Q9Y3F1 56 aa16.02■□□□□ 0.16
TMEM260-215ENST00000557626 ASPMQ8IZT6 3477 aa16.02■□□□□ 0.15
TMEM260-215ENST00000557626 LINC01565O15544 149 aa16.01■□□□□ 0.15
TMEM260-215ENST00000557626 LMNAP02545 664 aaKnown RBP16.01■□□□□ 0.15
TMEM260-215ENST00000557626 MYL3P08590 195 aa16.01■□□□□ 0.15
TMEM260-215ENST00000557626 GTF2F1P35269 517 aaKnown RBP eCLIP16.01■□□□□ 0.15
TMEM260-215ENST00000557626 PLCD1P51178 756 aa16.01■□□□□ 0.15
TMEM260-215ENST00000557626 HTRA4P83105 476 aaPredicted RBP16.01■□□□□ 0.15
TMEM260-215ENST00000557626 PURAQ00577 322 aaKnown RBP16.01■□□□□ 0.15
TMEM260-215ENST00000557626 ICA1Q05084 483 aa16.01■□□□□ 0.15
TMEM260-215ENST00000557626 IKBKEQ14164 716 aa16.01■□□□□ 0.15
TMEM260-215ENST00000557626 GPNMBQ14956 572 aa16.01■□□□□ 0.15
TMEM260-215ENST00000557626 TCTN1Q2MV58 587 aa16.01■□□□□ 0.15
TMEM260-215ENST00000557626 TMEM179Q6ZVK1 233 aa16.01■□□□□ 0.15
TMEM260-215ENST00000557626 FBXO11Q86XK2 927 aa16.01■□□□□ 0.15
TMEM260-215ENST00000557626 CLEC10AQ8IUN9 316 aa16.01■□□□□ 0.15
TMEM260-215ENST00000557626 CAGE1Q8TC20 777 aa16.01■□□□□ 0.15
TMEM260-215ENST00000557626 MSLNLQ96KJ4 702 aa16.01■□□□□ 0.15
TMEM260-215ENST00000557626 PHF7Q9BWX1 381 aaPredicted RBP16.01■□□□□ 0.15
TMEM260-215ENST00000557626 INCENPQ9NQS7 918 aa16.01■□□□□ 0.15
TMEM260-215ENST00000557626 PCDHGC5Q9Y5F6 944 aa16.01■□□□□ 0.15
TMEM260-215ENST00000557626 MYH8P13535 1937 aa16.01■□□□□ 0.15
TMEM260-215ENST00000557626 MYO5AQ9Y4I1 1855 aaKnown RBP16.01■□□□□ 0.15
TMEM260-215ENST00000557626 OTOGLQ3ZCN5 2332 aa16■□□□□ 0.15
TMEM260-215ENST00000557626 RRP1P56182 461 aaKnown RBP16■□□□□ 0.15
TMEM260-215ENST00000557626 SLFN5Q08AF3 891 aa16■□□□□ 0.15
TMEM260-215ENST00000557626 RSPO4Q2I0M5 234 aaPredicted RBP16■□□□□ 0.15
TMEM260-215ENST00000557626 NFRKBQ6P4R8 1299 aa16■□□□□ 0.15
TMEM260-215ENST00000557626 SMRP1Q8NCR6 262 aa16■□□□□ 0.15
TMEM260-215ENST00000557626 PPP1R13LQ8WUF5 828 aa16■□□□□ 0.15
TMEM260-215ENST00000557626 MTG1Q9BT17 334 aaPredicted RBP16■□□□□ 0.15
TMEM260-215ENST00000557626 GPHNQ9NQX3 736 aaPredicted RBP16■□□□□ 0.15
TMEM260-215ENST00000557626 NAV1Q8NEY1 1877 aa15.99■□□□□ 0.15
TMEM260-215ENST00000557626 PARNO95453 639 aaKnown RBP15.99■□□□□ 0.15
TMEM260-215ENST00000557626 CXCL10P02778 98 aa15.99■□□□□ 0.15
TMEM260-215ENST00000557626 HOXB3P14651 431 aaPredicted RBP15.99■□□□□ 0.15
TMEM260-215ENST00000557626 SELPP16109 830 aa15.99■□□□□ 0.15
TMEM260-215ENST00000557626 ASTLQ6HA08 431 aaPredicted RBP15.99■□□□□ 0.15
TMEM260-215ENST00000557626 LRRC8DQ7L1W4 858 aa15.99■□□□□ 0.15
TMEM260-215ENST00000557626 DHX30Q7L2E3 1194 aaKnown RBP eCLIP15.99■□□□□ 0.15
TMEM260-215ENST00000557626 MYOCDQ8IZQ8 938 aa15.99■□□□□ 0.15
TMEM260-215ENST00000557626 ASB14A6NK59 587 aa15.98■□□□□ 0.15
TMEM260-215ENST00000557626 NBNO60934 754 aa15.98■□□□□ 0.15
TMEM260-215ENST00000557626 AMHP03971 560 aa15.98■□□□□ 0.15
TMEM260-215ENST00000557626 POLR3DP05423 398 aaPredicted RBP15.98■□□□□ 0.15
TMEM260-215ENST00000557626 CNTN2Q02246 1040 aa15.98■□□□□ 0.15
TMEM260-215ENST00000557626 TFCP2Q12800 502 aa15.98■□□□□ 0.15
TMEM260-215ENST00000557626 ADAM15Q13444 863 aa15.98■□□□□ 0.15
TMEM260-215ENST00000557626 IQSEC1Q6DN90 963 aa15.98■□□□□ 0.15
TMEM260-215ENST00000557626 YME1L1Q96TA2 773 aa15.98■□□□□ 0.15
TMEM260-215ENST00000557626 LMAN2LQ9H0V9 348 aa15.98■□□□□ 0.15
TMEM260-215ENST00000557626 SEMA4AQ9H3S1 761 aa15.98■□□□□ 0.15
TMEM260-215ENST00000557626 PDGFCQ9NRA1 345 aa15.98■□□□□ 0.15
TMEM260-215ENST00000557626 SH2B1Q9NRF2 756 aaPredicted RBP15.98■□□□□ 0.15
TMEM260-215ENST00000557626 FBXO40Q9UH90 709 aa15.98■□□□□ 0.15
TMEM260-215ENST00000557626 USP15Q9Y4E8 981 aaPredicted RBP15.98■□□□□ 0.15
TMEM260-215ENST00000557626 ZFYVE26Q68DK2 2539 aa15.98■□□□□ 0.15
TMEM260-215ENST00000557626 RAD21O60216 631 aa15.97■□□□□ 0.15
TMEM260-215ENST00000557626 CPT1AP50416 773 aa15.97■□□□□ 0.15
TMEM260-215ENST00000557626 PTPN11Q06124 597 aaPredicted RBP15.97■□□□□ 0.15
TMEM260-215ENST00000557626 GABPAQ06546 454 aa15.97■□□□□ 0.15
TMEM260-215ENST00000557626 FAM83BQ5T0W9 1011 aa15.97■□□□□ 0.15
TMEM260-215ENST00000557626 TMEM63BQ5T3F8 832 aa15.97■□□□□ 0.15
TMEM260-215ENST00000557626 KIAA0319Q5VV43 1072 aa15.97■□□□□ 0.15
TMEM260-215ENST00000557626 LIN28BQ6ZN17 250 aaKnown RBP eCLIP15.97■□□□□ 0.15
TMEM260-215ENST00000557626 CERS3Q8IU89 383 aa15.97■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms