RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 PARP14Q460N5 1801 aa16.14■□□□□ 0.17
VIPAS39-208ENST00000556412 POTEB2H3BUK9 544 aa16.14■□□□□ 0.17
VIPAS39-208ENST00000556412 GUCY1B3Q02153 619 aa16.14■□□□□ 0.17
VIPAS39-208ENST00000556412 UBE2SQ16763 222 aa16.14■□□□□ 0.17
VIPAS39-208ENST00000556412 USP17L6PQ6QN14 398 aa16.14■□□□□ 0.17
VIPAS39-208ENST00000556412 FCHSD1Q86WN1 690 aa16.14■□□□□ 0.17
VIPAS39-208ENST00000556412 ABRAQ8N0Z2 381 aa16.14■□□□□ 0.17
VIPAS39-208ENST00000556412 PURBQ96QR8 312 aaKnown RBP16.14■□□□□ 0.17
VIPAS39-208ENST00000556412 C6orf50Q9HD87 102 aa16.14■□□□□ 0.17
VIPAS39-208ENST00000556412 FLT3LGP49771 235 aa16.13■□□□□ 0.17
VIPAS39-208ENST00000556412 MRPL12P52815 198 aaKnown RBP16.13■□□□□ 0.17
VIPAS39-208ENST00000556412 CNTN2Q02246 1040 aa16.13■□□□□ 0.17
VIPAS39-208ENST00000556412 MAP2K5Q13163 448 aa16.13■□□□□ 0.17
VIPAS39-208ENST00000556412 MORN1Q5T089 497 aa16.13■□□□□ 0.17
VIPAS39-208ENST00000556412 OTOP1Q7RTM1 612 aa16.13■□□□□ 0.17
VIPAS39-208ENST00000556412 SHISA4Q96DD7 197 aa16.13■□□□□ 0.17
VIPAS39-208ENST00000556412 C8orf76Q96K31 380 aa16.13■□□□□ 0.17
VIPAS39-208ENST00000556412 SH3GLB2Q9NR46 395 aa16.13■□□□□ 0.17
VIPAS39-208ENST00000556412 SRRDQ9UH36 339 aa16.13■□□□□ 0.17
VIPAS39-208ENST00000556412 COBLO75128 1261 aa16.12■□□□□ 0.17
VIPAS39-208ENST00000556412 RGS2P41220 211 aa16.12■□□□□ 0.17
VIPAS39-208ENST00000556412 RGS22Q8NE09 1264 aa16.12■□□□□ 0.17
VIPAS39-208ENST00000556412 INTS4Q96HW7 963 aaKnown RBP16.12■□□□□ 0.17
VIPAS39-208ENST00000556412 RIC8AQ9NPQ8 531 aa16.12■□□□□ 0.17
VIPAS39-208ENST00000556412 SLC5A4Q9NY91 659 aa16.12■□□□□ 0.17
VIPAS39-208ENST00000556412 GNRH1P01148 92 aa16.12■□□□□ 0.17
VIPAS39-208ENST00000556412 GNA11P29992 359 aa16.12■□□□□ 0.17
VIPAS39-208ENST00000556412 HSD17B4P51659 736 aa16.12■□□□□ 0.17
VIPAS39-208ENST00000556412 RAET1EQ8TD07 263 aa16.12■□□□□ 0.17
VIPAS39-208ENST00000556412 SYTL5Q8TDW5 730 aaPredicted RBP16.12■□□□□ 0.17
VIPAS39-208ENST00000556412 ZMYND12Q9H0C1 365 aa16.12■□□□□ 0.17
VIPAS39-208ENST00000556412 BIN2Q9UBW5 565 aaPredicted RBP16.12■□□□□ 0.17
VIPAS39-208ENST00000556412 GJD2Q9UKL4 321 aa16.12■□□□□ 0.17
VIPAS39-208ENST00000556412 KRT40Q6A162 431 aa16.11■□□□□ 0.17
VIPAS39-208ENST00000556412 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.11■□□□□ 0.17
VIPAS39-208ENST00000556412 APBA2Q99767 749 aa16.11■□□□□ 0.17
VIPAS39-208ENST00000556412 TMEM260Q9NX78 707 aa16.11■□□□□ 0.17
VIPAS39-208ENST00000556412 COL20A1Q9P218 1284 aa16.11■□□□□ 0.17
VIPAS39-208ENST00000556412 DAXXQ9UER7 740 aaPredicted RBP16.11■□□□□ 0.17
VIPAS39-208ENST00000556412 RBM19Q9Y4C8 960 aaKnown RBP16.11■□□□□ 0.17
VIPAS39-208ENST00000556412 ESYT2A0FGR8 921 aa16.1■□□□□ 0.17
VIPAS39-208ENST00000556412 MEIS2O14770 477 aa16.1■□□□□ 0.17
VIPAS39-208ENST00000556412 ADAMTS3O15072 1205 aa16.1■□□□□ 0.17
VIPAS39-208ENST00000556412 JAKMIP3Q5VZ66 844 aa16.1■□□□□ 0.17
VIPAS39-208ENST00000556412 REXO1Q8N1G1 1221 aaKnown RBP16.1■□□□□ 0.17
VIPAS39-208ENST00000556412 NPLOC4Q8TAT6 608 aa16.1■□□□□ 0.17
VIPAS39-208ENST00000556412 BICD2Q8TD16 824 aa16.1■□□□□ 0.17
VIPAS39-208ENST00000556412 RASGRP4Q8TDF6 673 aa16.1■□□□□ 0.17
VIPAS39-208ENST00000556412 PGBD1Q96JS3 809 aa16.1■□□□□ 0.17
VIPAS39-208ENST00000556412 TAAR1Q96RJ0 339 aa16.1■□□□□ 0.17
VIPAS39-208ENST00000556412 PHF20Q9BVI0 1012 aa16.1■□□□□ 0.17
VIPAS39-208ENST00000556412 GLT8D2Q9H1C3 349 aa16.1■□□□□ 0.17
VIPAS39-208ENST00000556412 PCDHA4Q9UN74 947 aa16.1■□□□□ 0.17
VIPAS39-208ENST00000556412 COL11A1P12107 1806 aaPredicted RBP16.1■□□□□ 0.17
VIPAS39-208ENST00000556412 DNAJC25-GNG10A0A024R161 153 aa16.1■□□□□ 0.17
VIPAS39-208ENST00000556412 SPDYE3A6NKU9 549 aa16.1■□□□□ 0.17
VIPAS39-208ENST00000556412 H3BQV1 296 aa16.1■□□□□ 0.17
VIPAS39-208ENST00000556412 EIF2AK2P19525 551 aaKnown RBP16.1■□□□□ 0.17
VIPAS39-208ENST00000556412 UBXN2AP68543 259 aa16.1■□□□□ 0.17
VIPAS39-208ENST00000556412 ZNF792Q3KQV3 632 aa16.1■□□□□ 0.17
VIPAS39-208ENST00000556412 IFFO2Q5TF58 517 aa16.1■□□□□ 0.17
VIPAS39-208ENST00000556412 ARHGEF16Q5VV41 709 aa16.1■□□□□ 0.17
VIPAS39-208ENST00000556412 LARP1BQ659C4 914 aaKnown RBP16.1■□□□□ 0.17
VIPAS39-208ENST00000556412 CTU1Q7Z7A3 348 aaKnown RBP16.1■□□□□ 0.17
VIPAS39-208ENST00000556412 FAM133AQ8N9E0 248 aa16.1■□□□□ 0.17
VIPAS39-208ENST00000556412 USP6NLQ92738 828 aa16.1■□□□□ 0.17
VIPAS39-208ENST00000556412 RMDN3Q96TC7 470 aa16.1■□□□□ 0.17
VIPAS39-208ENST00000556412 BRMS1Q9HCU9 246 aa16.1■□□□□ 0.17
VIPAS39-208ENST00000556412 ADD3Q9UEY8 706 aaKnown RBP16.1■□□□□ 0.17
VIPAS39-208ENST00000556412 SOWAHBA6NEL2 793 aa16.09■□□□□ 0.17
VIPAS39-208ENST00000556412 PIK3CDO00329 1044 aa16.09■□□□□ 0.17
VIPAS39-208ENST00000556412 CCL14Q16627 93 aa16.09■□□□□ 0.17
VIPAS39-208ENST00000556412 BLIDQ8IZY5 108 aa16.09■□□□□ 0.17
VIPAS39-208ENST00000556412 SAMD3Q8N6K7 520 aa16.09■□□□□ 0.17
VIPAS39-208ENST00000556412 MAML3Q96JK9 1138 aa16.09■□□□□ 0.17
VIPAS39-208ENST00000556412 MAP3K20Q9NYL2 800 aaKnown RBP16.09■□□□□ 0.17
VIPAS39-208ENST00000556412 PTCH2Q9Y6C5 1203 aa16.09■□□□□ 0.17
VIPAS39-208ENST00000556412 DDX49Q9Y6V7 483 aaKnown RBP16.09■□□□□ 0.17
VIPAS39-208ENST00000556412 MMP1P03956 469 aa16.08■□□□□ 0.17
VIPAS39-208ENST00000556412 ELNP15502 786 aa16.08■□□□□ 0.17
VIPAS39-208ENST00000556412 KRT2P35908 639 aa16.08■□□□□ 0.17
VIPAS39-208ENST00000556412 PRMT2P55345 433 aa16.08■□□□□ 0.17
VIPAS39-208ENST00000556412 GHRHRQ02643 423 aa16.08■□□□□ 0.17
VIPAS39-208ENST00000556412 GNL2Q13823 731 aaKnown RBP16.08■□□□□ 0.17
VIPAS39-208ENST00000556412 SAFBQ15424 915 aaKnown RBP eCLIP16.08■□□□□ 0.17
VIPAS39-208ENST00000556412 PCDHA6Q9UN73 950 aa16.08■□□□□ 0.17
VIPAS39-208ENST00000556412 PCDHA8Q9Y5H6 950 aa16.08■□□□□ 0.17
VIPAS39-208ENST00000556412 ADCY3O60266 1144 aa16.08■□□□□ 0.16
VIPAS39-208ENST00000556412 HOXC6P09630 235 aa16.08■□□□□ 0.16
VIPAS39-208ENST00000556412 ALDH5A1P51649 535 aaPredicted RBP16.08■□□□□ 0.16
VIPAS39-208ENST00000556412 GALNT17Q6IS24 598 aa16.08■□□□□ 0.16
VIPAS39-208ENST00000556412 DIS3L2Q8IYB7 885 aaKnown RBP16.08■□□□□ 0.16
VIPAS39-208ENST00000556412 FAM177A1Q8N128 213 aaPredicted RBP16.08■□□□□ 0.16
VIPAS39-208ENST00000556412 FBXO18Q8NFZ0 1043 aa16.08■□□□□ 0.16
VIPAS39-208ENST00000556412 OXER1Q8TDS5 423 aa16.08■□□□□ 0.16
VIPAS39-208ENST00000556412 NSUN6Q8TEA1 469 aaKnown RBP16.08■□□□□ 0.16
VIPAS39-208ENST00000556412 MAF1Q9H063 256 aa16.08■□□□□ 0.16
VIPAS39-208ENST00000556412 PRDM10Q9NQV6 1147 aa16.08■□□□□ 0.16
VIPAS39-208ENST00000556412 PTPN22Q9Y2R2 807 aa16.08■□□□□ 0.16
VIPAS39-208ENST00000556412 BAZ2BQ9UIF8 2168 aaKnown RBP16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms