RNA–Protein interactions for RNA: ENST00000555634.5

SHMT2-220, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 964 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-220ENST00000555634 TRAPPC10P48553 1259 aa12.79□□□□□ -0.36
SHMT2-220ENST00000555634 KCTD2Q14681 263 aa12.79□□□□□ -0.36
SHMT2-220ENST00000555634 NSMFQ6X4W1 530 aa12.79□□□□□ -0.36
SHMT2-220ENST00000555634 ANKRD35Q8N283 1001 aa12.79□□□□□ -0.36
SHMT2-220ENST00000555634 ANKRD13CQ8N6S4 541 aa12.79□□□□□ -0.36
SHMT2-220ENST00000555634 ZNF536O15090 1300 aa12.79□□□□□ -0.36
SHMT2-220ENST00000555634 LCTP09848 1927 aa12.78□□□□□ -0.36
SHMT2-220ENST00000555634 BTBD18B2RXH4 712 aa12.78□□□□□ -0.36
SHMT2-220ENST00000555634 PTMSP20962 102 aa12.78□□□□□ -0.36
SHMT2-220ENST00000555634 MAPK4P31152 587 aa12.78□□□□□ -0.36
SHMT2-220ENST00000555634 RESTQ13127 1097 aa12.78□□□□□ -0.36
SHMT2-220ENST00000555634 PKP1Q13835 747 aa12.78□□□□□ -0.36
SHMT2-220ENST00000555634 KIF22Q14807 665 aa12.78□□□□□ -0.36
SHMT2-220ENST00000555634 PIK3AP1Q6ZUJ8 805 aa12.78□□□□□ -0.36
SHMT2-220ENST00000555634 REPS2Q8NFH8 660 aa12.78□□□□□ -0.36
SHMT2-220ENST00000555634 GJB4Q9NTQ9 266 aa12.78□□□□□ -0.36
SHMT2-220ENST00000555634 SLC5A4Q9NY91 659 aa12.78□□□□□ -0.36
SHMT2-220ENST00000555634 MORF4L1Q9UBU8 362 aa12.78□□□□□ -0.36
SHMT2-220ENST00000555634 LRRC37A2A6NM11 1700 aa12.78□□□□□ -0.36
SHMT2-220ENST00000555634 KIAA1217Q5T5P2 1943 aa12.78□□□□□ -0.36
SHMT2-220ENST00000555634 IGF2BP3O00425 579 aaKnown RBP eCLIP12.77□□□□□ -0.37
SHMT2-220ENST00000555634 FCER1AP12319 257 aa12.77□□□□□ -0.37
SHMT2-220ENST00000555634 GCFC2P16383 781 aaKnown RBP12.77□□□□□ -0.37
SHMT2-220ENST00000555634 HSPA6P17066 643 aa12.77□□□□□ -0.37
SHMT2-220ENST00000555634 NR5A1Q13285 461 aa12.77□□□□□ -0.37
SHMT2-220ENST00000555634 ORC2Q13416 577 aaPredicted RBP12.77□□□□□ -0.37
SHMT2-220ENST00000555634 UBE2SQ16763 222 aa12.77□□□□□ -0.37
SHMT2-220ENST00000555634 JAKMIP3Q5VZ66 844 aa12.77□□□□□ -0.37
SHMT2-220ENST00000555634 TYW1BQ6NUM6 668 aa12.77□□□□□ -0.37
SHMT2-220ENST00000555634 NEK8Q86SG6 692 aa12.77□□□□□ -0.37
SHMT2-220ENST00000555634 JMYQ8N9B5 988 aa12.77□□□□□ -0.37
SHMT2-220ENST00000555634 MMP19Q99542 508 aa12.77□□□□□ -0.37
SHMT2-220ENST00000555634 MOV10L1Q9BXT6 1211 aaKnown RBP12.77□□□□□ -0.37
SHMT2-220ENST00000555634 ANO3Q9BYT9 981 aa12.77□□□□□ -0.37
SHMT2-220ENST00000555634 SCAND2PQ9GZW5 306 aaPredicted RBP12.77□□□□□ -0.37
SHMT2-220ENST00000555634 BTBD7Q9P203 1132 aa12.77□□□□□ -0.37
SHMT2-220ENST00000555634 BIN2Q9UBW5 565 aaPredicted RBP12.77□□□□□ -0.37
SHMT2-220ENST00000555634 ADD3Q9UEY8 706 aaKnown RBP12.77□□□□□ -0.37
SHMT2-220ENST00000555634 DDX11L8A8MPP1 907 aa12.76□□□□□ -0.37
SHMT2-220ENST00000555634 NFIBO00712 420 aa12.76□□□□□ -0.37
SHMT2-220ENST00000555634 CA12O43570 354 aa12.76□□□□□ -0.37
SHMT2-220ENST00000555634 TLR2O60603 784 aa12.76□□□□□ -0.37
SHMT2-220ENST00000555634 ERCC3P19447 782 aa12.76□□□□□ -0.37
SHMT2-220ENST00000555634 HSD17B4P51659 736 aa12.76□□□□□ -0.37
SHMT2-220ENST00000555634 SF3A1Q15459 793 aaKnown RBP12.76□□□□□ -0.37
SHMT2-220ENST00000555634 MYSM1Q5VVJ2 828 aa12.76□□□□□ -0.37
SHMT2-220ENST00000555634 FCHSD1Q86WN1 690 aa12.76□□□□□ -0.37
SHMT2-220ENST00000555634 TNPO1Q92973 898 aaKnown RBP12.76□□□□□ -0.37
SHMT2-220ENST00000555634 PTPN18Q99952 460 aa12.76□□□□□ -0.37
SHMT2-220ENST00000555634 TCEAL9Q9UHQ7 104 aa12.76□□□□□ -0.37
SHMT2-220ENST00000555634 PCDHA6Q9UN73 950 aa12.76□□□□□ -0.37
SHMT2-220ENST00000555634 PCDHA8Q9Y5H6 950 aa12.76□□□□□ -0.37
SHMT2-220ENST00000555634 GOLGA6L4A6NEF3 574 aa12.75□□□□□ -0.37
SHMT2-220ENST00000555634 STRNO43815 780 aa12.75□□□□□ -0.37
SHMT2-220ENST00000555634 MARCH6O60337 910 aa12.75□□□□□ -0.37
SHMT2-220ENST00000555634 AOC2O75106 756 aa12.75□□□□□ -0.37
SHMT2-220ENST00000555634 HOXA13P31271 388 aaPredicted RBP12.75□□□□□ -0.37
SHMT2-220ENST00000555634 ZNF76P36508 570 aa12.75□□□□□ -0.37
SHMT2-220ENST00000555634 CRHR2Q13324 411 aa12.75□□□□□ -0.37
SHMT2-220ENST00000555634 ARHGEF6Q15052 776 aa12.75□□□□□ -0.37
SHMT2-220ENST00000555634 STK38Q15208 465 aa12.75□□□□□ -0.37
SHMT2-220ENST00000555634 FOXD4L6Q3SYB3 417 aaPredicted RBP12.75□□□□□ -0.37
SHMT2-220ENST00000555634 MUM1L1Q5H9M0 696 aa12.75□□□□□ -0.37
SHMT2-220ENST00000555634 TTC38Q5R3I4 469 aa12.75□□□□□ -0.37
SHMT2-220ENST00000555634 ARHGEF16Q5VV41 709 aa12.75□□□□□ -0.37
SHMT2-220ENST00000555634 USP17L6PQ6QN14 398 aa12.75□□□□□ -0.37
SHMT2-220ENST00000555634 FOXD4L3Q6VB84 417 aaPredicted RBP12.75□□□□□ -0.37
SHMT2-220ENST00000555634 LOXHD1Q8IVV2 1947 aa12.75□□□□□ -0.37
SHMT2-220ENST00000555634 OXER1Q8TDS5 423 aa12.75□□□□□ -0.37
SHMT2-220ENST00000555634 RBPJLQ9UBG7 517 aa12.75□□□□□ -0.37
SHMT2-220ENST00000555634 ADGRA2Q96PE1 1338 aa12.74□□□□□ -0.37
SHMT2-220ENST00000555634 KIF28PB7ZC32 967 aa12.74□□□□□ -0.37
SHMT2-220ENST00000555634 POTEB2H3BUK9 544 aa12.74□□□□□ -0.37
SHMT2-220ENST00000555634 LAD1O00515 517 aa12.74□□□□□ -0.37
SHMT2-220ENST00000555634 MEIS2O14770 477 aa12.74□□□□□ -0.37
SHMT2-220ENST00000555634 FIBPO43427 364 aa12.74□□□□□ -0.37
SHMT2-220ENST00000555634 CLK2P49760 499 aaKnown RBP12.74□□□□□ -0.37
SHMT2-220ENST00000555634 VEGFBP49765 207 aa12.74□□□□□ -0.37
SHMT2-220ENST00000555634 FCGRTP55899 365 aa12.74□□□□□ -0.37
SHMT2-220ENST00000555634 RPS6P62753 249 aaKnown RBP12.74□□□□□ -0.37
SHMT2-220ENST00000555634 SETQ01105 290 aaPredicted RBP12.74□□□□□ -0.37
SHMT2-220ENST00000555634 GHRHRQ02643 423 aa12.74□□□□□ -0.37
SHMT2-220ENST00000555634 MAP2K1Q02750 393 aaPredicted RBP12.74□□□□□ -0.37
SHMT2-220ENST00000555634 INF2Q27J81 1249 aa12.74□□□□□ -0.37
SHMT2-220ENST00000555634 LETM2Q2VYF4 491 aa12.74□□□□□ -0.37
SHMT2-220ENST00000555634 SLC30A10Q6XR72 485 aa12.74□□□□□ -0.37
SHMT2-220ENST00000555634 ABRAQ8N0Z2 381 aa12.74□□□□□ -0.37
SHMT2-220ENST00000555634 DNERQ8NFT8 737 aa12.74□□□□□ -0.37
SHMT2-220ENST00000555634 RASGRP4Q8TDF6 673 aa12.74□□□□□ -0.37
SHMT2-220ENST00000555634 KCNG4Q8TDN1 519 aa12.74□□□□□ -0.37
SHMT2-220ENST00000555634 NSUN6Q8TEA1 469 aaKnown RBP12.74□□□□□ -0.37
SHMT2-220ENST00000555634 TBCKQ8TEA7 893 aa12.74□□□□□ -0.37
SHMT2-220ENST00000555634 SOCS4Q8WXH5 440 aa12.74□□□□□ -0.37
SHMT2-220ENST00000555634 CLEC4DQ8WXI8 215 aa12.74□□□□□ -0.37
SHMT2-220ENST00000555634 SPATA32Q96LK8 384 aa12.74□□□□□ -0.37
SHMT2-220ENST00000555634 A1CFQ9NQ94 594 aaKnown RBP12.74□□□□□ -0.37
SHMT2-220ENST00000555634 TMEM260Q9NX78 707 aa12.74□□□□□ -0.37
SHMT2-220ENST00000555634 SAGE1Q9NXZ1 904 aa12.74□□□□□ -0.37
SHMT2-220ENST00000555634 CYP39A1Q9NYL5 469 aa12.74□□□□□ -0.37
SHMT2-220ENST00000555634 CPA4Q9UI42 421 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms