RNA–Protein interactions for RNA: ENST00000555351.1

VRK1-204, Transcript of vaccinia related kinase 1, humanhuman

TSL 2

Gene VRK1, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-204ENST00000555351 KIAA0355O15063 1070 aa13.8□□□□□ -0.2
VRK1-204ENST00000555351 NKRFO15226 690 aaKnown RBP eCLIP13.8□□□□□ -0.2
VRK1-204ENST00000555351 CTAGE5O15320 804 aa13.8□□□□□ -0.2
VRK1-204ENST00000555351 ZEB2O60315 1214 aa13.8□□□□□ -0.2
VRK1-204ENST00000555351 ASGR1P07306 291 aa13.8□□□□□ -0.2
VRK1-204ENST00000555351 GHRHRQ02643 423 aa13.8□□□□□ -0.2
VRK1-204ENST00000555351 DUSP28Q4G0W2 176 aa13.8□□□□□ -0.2
VRK1-204ENST00000555351 GNASQ5JWF2 1037 aa13.8□□□□□ -0.2
VRK1-204ENST00000555351 FBXO11Q86XK2 927 aa13.8□□□□□ -0.2
VRK1-204ENST00000555351 ESYT1Q9BSJ8 1104 aa13.8□□□□□ -0.2
VRK1-204ENST00000555351 AP5M1Q9H0R1 490 aa13.8□□□□□ -0.2
VRK1-204ENST00000555351 PDLIM7Q9NR12 457 aa13.8□□□□□ -0.2
VRK1-204ENST00000555351 MRPL11Q9Y3B7 192 aaKnown RBP13.8□□□□□ -0.2
VRK1-204ENST00000555351 RBM8AQ9Y5S9 174 aaKnown RBP13.8□□□□□ -0.2
VRK1-204ENST00000555351 A0A0U1RQG5 324 aaPredicted RBP13.79□□□□□ -0.2
VRK1-204ENST00000555351 DCDC2CA8MYV0 355 aa13.79□□□□□ -0.2
VRK1-204ENST00000555351 KLRF2D3W0D1 207 aa13.79□□□□□ -0.2
VRK1-204ENST00000555351 CLTBP09497 229 aa13.79□□□□□ -0.2
VRK1-204ENST00000555351 CALML3P27482 149 aa13.79□□□□□ -0.2
VRK1-204ENST00000555351 CDK7P50613 346 aa13.79□□□□□ -0.2
VRK1-204ENST00000555351 TROAPQ12815 778 aa13.79□□□□□ -0.2
VRK1-204ENST00000555351 GRM4Q14833 912 aa13.79□□□□□ -0.2
VRK1-204ENST00000555351 WTAPQ15007 396 aa13.79□□□□□ -0.2
VRK1-204ENST00000555351 QRICH1Q2TAL8 776 aa13.79□□□□□ -0.2
VRK1-204ENST00000555351 SLC30A10Q6XR72 485 aa13.79□□□□□ -0.2
VRK1-204ENST00000555351 TLK2Q86UE8 772 aa13.79□□□□□ -0.2
VRK1-204ENST00000555351 MB21D2Q8IYB1 491 aaPredicted RBP13.79□□□□□ -0.2
VRK1-204ENST00000555351 TMTC2Q8N394 836 aa13.79□□□□□ -0.2
VRK1-204ENST00000555351 IWS1Q96ST2 819 aa13.79□□□□□ -0.2
VRK1-204ENST00000555351 AMNQ9BXJ7 453 aa13.79□□□□□ -0.2
VRK1-204ENST00000555351 LSG1Q9H089 658 aaKnown RBP13.79□□□□□ -0.2
VRK1-204ENST00000555351 MAD2L2Q9UI95 211 aa13.79□□□□□ -0.2
VRK1-204ENST00000555351 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.78□□□□□ -0.2
VRK1-204ENST00000555351 MYADML2A6NDP7 307 aa13.78□□□□□ -0.2
VRK1-204ENST00000555351 SMPD1P17405 629 aa13.78□□□□□ -0.2
VRK1-204ENST00000555351 MDM2Q00987 491 aaPredicted RBP13.78□□□□□ -0.2
VRK1-204ENST00000555351 PDE4DQ08499 809 aa13.78□□□□□ -0.2
VRK1-204ENST00000555351 FSCN1Q16658 493 aaKnown RBP13.78□□□□□ -0.2
VRK1-204ENST00000555351 USH1GQ495M9 461 aa13.78□□□□□ -0.2
VRK1-204ENST00000555351 STOX1Q6ZVD7 989 aa13.78□□□□□ -0.2
VRK1-204ENST00000555351 NOL8Q76FK4 1167 aaKnown RBP13.78□□□□□ -0.2
VRK1-204ENST00000555351 FBXO16Q8IX29 292 aaPredicted RBP13.78□□□□□ -0.2
VRK1-204ENST00000555351 STAG2Q8N3U4 1231 aa13.78□□□□□ -0.2
VRK1-204ENST00000555351 SLC43A3Q8NBI5 491 aa13.78□□□□□ -0.2
VRK1-204ENST00000555351 IGDCC4Q8TDY8 1250 aa13.78□□□□□ -0.2
VRK1-204ENST00000555351 NSUN6Q8TEA1 469 aaKnown RBP13.78□□□□□ -0.2
VRK1-204ENST00000555351 SCFD2Q8WU76 684 aa13.78□□□□□ -0.2
VRK1-204ENST00000555351 CPVLQ9H3G5 476 aa13.78□□□□□ -0.2
VRK1-204ENST00000555351 RIOX1Q9H6W3 641 aa13.78□□□□□ -0.2
VRK1-204ENST00000555351 DNAH12Q6ZR08 3092 aa13.78□□□□□ -0.2
VRK1-204ENST00000555351 MYH6P13533 1939 aa13.78□□□□□ -0.2
VRK1-204ENST00000555351 TRIM43BA6NCK2 446 aa13.77□□□□□ -0.21
VRK1-204ENST00000555351 ARVCFO00192 962 aa13.77□□□□□ -0.21
VRK1-204ENST00000555351 ZBTB5O15062 677 aa13.77□□□□□ -0.21
VRK1-204ENST00000555351 DHX16O60231 1041 aaKnown RBP13.77□□□□□ -0.21
VRK1-204ENST00000555351 SMARCA1P28370 1054 aa13.77□□□□□ -0.21
VRK1-204ENST00000555351 FAAP100Q0VG06 881 aa13.77□□□□□ -0.21
VRK1-204ENST00000555351 NECTIN1Q15223 517 aa13.77□□□□□ -0.21
VRK1-204ENST00000555351 TMEM67Q5HYA8 995 aa13.77□□□□□ -0.21
VRK1-204ENST00000555351 CATIPQ7Z7H3 387 aa13.77□□□□□ -0.21
VRK1-204ENST00000555351 TRIM43Q96BQ3 446 aaPredicted RBP13.77□□□□□ -0.21
VRK1-204ENST00000555351 TMEM87BQ96K49 555 aa13.77□□□□□ -0.21
VRK1-204ENST00000555351 PURBQ96QR8 312 aaKnown RBP13.77□□□□□ -0.21
VRK1-204ENST00000555351 WDR11Q9BZH6 1224 aa13.77□□□□□ -0.21
VRK1-204ENST00000555351 PRDM5Q9NQX1 630 aaPredicted RBP13.77□□□□□ -0.21
VRK1-204ENST00000555351 PDGFCQ9NRA1 345 aa13.77□□□□□ -0.21
VRK1-204ENST00000555351 TAF6LQ9Y6J9 622 aa13.77□□□□□ -0.21
VRK1-204ENST00000555351 DYNC1LI2O43237 492 aaPredicted RBP13.76□□□□□ -0.21
VRK1-204ENST00000555351 KPNA6O60684 536 aa13.76□□□□□ -0.21
VRK1-204ENST00000555351 PQBP1O60828 265 aaKnown RBP13.76□□□□□ -0.21
VRK1-204ENST00000555351 DDAH1O94760 285 aa13.76□□□□□ -0.21
VRK1-204ENST00000555351 MCM5P33992 734 aa13.76□□□□□ -0.21
VRK1-204ENST00000555351 CPT1AP50416 773 aa13.76□□□□□ -0.21
VRK1-204ENST00000555351 HSD17B4P51659 736 aa13.76□□□□□ -0.21
VRK1-204ENST00000555351 ANTXR2P58335 489 aa13.76□□□□□ -0.21
VRK1-204ENST00000555351 RNF20Q5VTR2 975 aa13.76□□□□□ -0.21
VRK1-204ENST00000555351 CASC1Q6TDU7 716 aa13.76□□□□□ -0.21
VRK1-204ENST00000555351 SYTL5Q8TDW5 730 aaPredicted RBP13.76□□□□□ -0.21
VRK1-204ENST00000555351 TMEM39AQ9NV64 488 aa13.76□□□□□ -0.21
VRK1-204ENST00000555351 POLR3EQ9NVU0 708 aa13.76□□□□□ -0.21
VRK1-204ENST00000555351 TBX21Q9UL17 535 aa13.76□□□□□ -0.21
VRK1-204ENST00000555351 SOX1O00570 391 aaPredicted RBP13.75□□□□□ -0.21
VRK1-204ENST00000555351 SLC27A2O14975 620 aa13.75□□□□□ -0.21
VRK1-204ENST00000555351 TLR3O15455 904 aaKnown RBP13.75□□□□□ -0.21
VRK1-204ENST00000555351 RAG1P15918 1043 aa13.75□□□□□ -0.21
VRK1-204ENST00000555351 KIF5BP33176 963 aa13.75□□□□□ -0.21
VRK1-204ENST00000555351 LIFRP42702 1097 aa13.75□□□□□ -0.21
VRK1-204ENST00000555351 IRX5P78411 483 aaPredicted RBP13.75□□□□□ -0.21
VRK1-204ENST00000555351 PPP2R5BQ15173 497 aa13.75□□□□□ -0.21
VRK1-204ENST00000555351 STXBP2Q15833 593 aa13.75□□□□□ -0.21
VRK1-204ENST00000555351 BRDTQ58F21 947 aaPredicted RBP13.75□□□□□ -0.21
VRK1-204ENST00000555351 EEPD1Q7L9B9 569 aa13.75□□□□□ -0.21
VRK1-204ENST00000555351 SH3RF1Q7Z6J0 888 aa13.75□□□□□ -0.21
VRK1-204ENST00000555351 BADQ92934 168 aa13.75□□□□□ -0.21
VRK1-204ENST00000555351 VTI1AQ96AJ9 217 aa13.75□□□□□ -0.21
VRK1-204ENST00000555351 RMDN3Q96TC7 470 aa13.75□□□□□ -0.21
VRK1-204ENST00000555351 LZTS2Q9BRK4 669 aa13.75□□□□□ -0.21
VRK1-204ENST00000555351 SPZ1Q9BXG8 430 aa13.75□□□□□ -0.21
VRK1-204ENST00000555351 LY9Q9HBG7 655 aa13.75□□□□□ -0.21
VRK1-204ENST00000555351 VAT1LQ9HCJ6 419 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms