RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 SSU72Q9NP77 194 aaKnown RBP5.1□□□□□ -1.59
LIMA1-208ENST00000551691 SNTG2Q9NY99 539 aa5.1□□□□□ -1.59
LIMA1-208ENST00000551691 ACTR10Q9NZ32 417 aa5.1□□□□□ -1.59
LIMA1-208ENST00000551691 POGKQ9P215 609 aa5.1□□□□□ -1.59
LIMA1-208ENST00000551691 NOP58Q9Y2X3 529 aaKnown RBP5.1□□□□□ -1.59
LIMA1-208ENST00000551691 TOPAZ1Q8N9V7 1692 aa5.09□□□□□ -1.59
LIMA1-208ENST00000551691 COL5A2P05997 1499 aaPredicted RBP5.09□□□□□ -1.59
LIMA1-208ENST00000551691 USP6P35125 1406 aa5.09□□□□□ -1.59
LIMA1-208ENST00000551691 RPGRIP1LQ68CZ1 1315 aa5.09□□□□□ -1.59
LIMA1-208ENST00000551691 RBAK-RBAKDNI3L0D1 243 aa5.09□□□□□ -1.59
LIMA1-208ENST00000551691 TLR3O15455 904 aaKnown RBP5.09□□□□□ -1.59
LIMA1-208ENST00000551691 GSTP1P09211 210 aaKnown RBP5.09□□□□□ -1.59
LIMA1-208ENST00000551691 FUT4P22083 530 aa5.09□□□□□ -1.59
LIMA1-208ENST00000551691 ZNF165P49910 485 aa5.09□□□□□ -1.59
LIMA1-208ENST00000551691 SERINC3Q13530 473 aa5.09□□□□□ -1.59
LIMA1-208ENST00000551691 AOC3Q16853 763 aa5.09□□□□□ -1.59
LIMA1-208ENST00000551691 LARP1BQ659C4 914 aaKnown RBP5.09□□□□□ -1.59
LIMA1-208ENST00000551691 MPRIPQ6WCQ1 1025 aa5.09□□□□□ -1.59
LIMA1-208ENST00000551691 AMIGO3Q86WK7 504 aa5.09□□□□□ -1.59
LIMA1-208ENST00000551691 HOMER1Q86YM7 354 aa5.09□□□□□ -1.59
LIMA1-208ENST00000551691 STK11IPQ8N1F8 1099 aa5.09□□□□□ -1.59
LIMA1-208ENST00000551691 MICAL1Q8TDZ2 1067 aa5.09□□□□□ -1.59
LIMA1-208ENST00000551691 FAM168AQ92567 244 aa5.09□□□□□ -1.59
LIMA1-208ENST00000551691 APPBP2Q92624 585 aa5.09□□□□□ -1.59
LIMA1-208ENST00000551691 JARID2Q92833 1246 aaPredicted RBP5.09□□□□□ -1.59
LIMA1-208ENST00000551691 RHOVQ96L33 236 aa5.09□□□□□ -1.59
LIMA1-208ENST00000551691 TMX1Q9H3N1 280 aa5.09□□□□□ -1.59
LIMA1-208ENST00000551691 CBX8Q9HC52 389 aa5.09□□□□□ -1.59
LIMA1-208ENST00000551691 METTL14Q9HCE5 456 aaKnown RBP5.09□□□□□ -1.59
LIMA1-208ENST00000551691 PPT2Q9UMR5 302 aa5.09□□□□□ -1.59
LIMA1-208ENST00000551691 PLAGL2Q9UPG8 496 aa5.09□□□□□ -1.59
LIMA1-208ENST00000551691 PCDHGC5Q9Y5F6 944 aa5.09□□□□□ -1.59
LIMA1-208ENST00000551691 CSADQ9Y600 493 aa5.09□□□□□ -1.59
LIMA1-208ENST00000551691 KIAA1210Q9ULL0 1709 aa5.09□□□□□ -1.6
LIMA1-208ENST00000551691 LRRC37A3O60309 1634 aa5.08□□□□□ -1.6
LIMA1-208ENST00000551691 BCL9O00512 1426 aa5.08□□□□□ -1.6
LIMA1-208ENST00000551691 YTHDC2Q9H6S0 1430 aaKnown RBP5.08□□□□□ -1.6
LIMA1-208ENST00000551691 ENPP3O14638 875 aa5.08□□□□□ -1.6
LIMA1-208ENST00000551691 SMAD7O15105 426 aaKnown RBP5.08□□□□□ -1.6
LIMA1-208ENST00000551691 MARCH6O60337 910 aa5.08□□□□□ -1.6
LIMA1-208ENST00000551691 RAB11FIP3O75154 756 aa5.08□□□□□ -1.6
LIMA1-208ENST00000551691 SLFN14P0C7P3 912 aa5.08□□□□□ -1.6
LIMA1-208ENST00000551691 HSPA8P11142 646 aaKnown RBP5.08□□□□□ -1.6
LIMA1-208ENST00000551691 IMPDH2P12268 514 aa5.08□□□□□ -1.6
LIMA1-208ENST00000551691 RPS26P62854 115 aaKnown RBP5.08□□□□□ -1.6
LIMA1-208ENST00000551691 PPP2R5EQ16537 467 aa5.08□□□□□ -1.6
LIMA1-208ENST00000551691 LCE4AQ5TA78 99 aa5.08□□□□□ -1.6
LIMA1-208ENST00000551691 LRP10Q7Z4F1 713 aa5.08□□□□□ -1.6
LIMA1-208ENST00000551691 OR6P1Q8NGX9 317 aa5.08□□□□□ -1.6
LIMA1-208ENST00000551691 PI4K2BQ8TCG2 481 aa5.08□□□□□ -1.6
LIMA1-208ENST00000551691 ANKRD24Q8TF21 1146 aa5.08□□□□□ -1.6
LIMA1-208ENST00000551691 ISL2Q96A47 359 aa5.08□□□□□ -1.6
LIMA1-208ENST00000551691 DUSP23Q9BVJ7 150 aa5.08□□□□□ -1.6
LIMA1-208ENST00000551691 CHMP4AQ9BY43 222 aa5.08□□□□□ -1.6
LIMA1-208ENST00000551691 TMEM39AQ9NV64 488 aa5.08□□□□□ -1.6
LIMA1-208ENST00000551691 PRKAB1Q9Y478 270 aa5.08□□□□□ -1.6
LIMA1-208ENST00000551691 COL4A3BPQ9Y5P4 624 aa5.08□□□□□ -1.6
LIMA1-208ENST00000551691 TUBGCP6Q96RT7 1819 aa5.08□□□□□ -1.6
LIMA1-208ENST00000551691 PDE4DIPQ5VU43 2346 aa5.08□□□□□ -1.6
LIMA1-208ENST00000551691 IFT172Q9UG01 1749 aa5.08□□□□□ -1.6
LIMA1-208ENST00000551691 TULP4Q9NRJ4 1543 aa5.07□□□□□ -1.6
LIMA1-208ENST00000551691 BIN1O00499 593 aa5.07□□□□□ -1.6
LIMA1-208ENST00000551691 OXCT1P55809 520 aa5.07□□□□□ -1.6
LIMA1-208ENST00000551691 HNRNPUQ00839 825 aaKnown RBP eCLIP5.07□□□□□ -1.6
LIMA1-208ENST00000551691 LRRC14Q15048 493 aa5.07□□□□□ -1.6
LIMA1-208ENST00000551691 FXNQ16595 210 aa5.07□□□□□ -1.6
LIMA1-208ENST00000551691 KIF4BQ2VIQ3 1234 aa5.07□□□□□ -1.6
LIMA1-208ENST00000551691 MTERF2Q49AM1 385 aa5.07□□□□□ -1.6
LIMA1-208ENST00000551691 MAP1SQ66K74 1059 aaPredicted RBP5.07□□□□□ -1.6
LIMA1-208ENST00000551691 AGMOQ6ZNB7 445 aa5.07□□□□□ -1.6
LIMA1-208ENST00000551691 GK5Q6ZS86 529 aa5.07□□□□□ -1.6
LIMA1-208ENST00000551691 UBE3DQ7Z6J8 389 aa5.07□□□□□ -1.6
LIMA1-208ENST00000551691 SH3TC2Q8TF17 1288 aa5.07□□□□□ -1.6
LIMA1-208ENST00000551691 SYTL4Q96C24 671 aaPredicted RBP5.07□□□□□ -1.6
LIMA1-208ENST00000551691 HRASLS5Q96KN8 279 aa5.07□□□□□ -1.6
LIMA1-208ENST00000551691 NECAB3Q96P71 396 aaPredicted RBP5.07□□□□□ -1.6
LIMA1-208ENST00000551691 ST7Q9NRC1 585 aa5.07□□□□□ -1.6
LIMA1-208ENST00000551691 FANCLQ9NW38 375 aa5.07□□□□□ -1.6
LIMA1-208ENST00000551691 MAPK8IP1Q9UQF2 711 aa5.07□□□□□ -1.6
LIMA1-208ENST00000551691 LMO7Q8WWI1 1683 aa5.07□□□□□ -1.6
LIMA1-208ENST00000551691 VPS8Q8N3P4 1428 aa5.06□□□□□ -1.6
LIMA1-208ENST00000551691 CPDO75976 1380 aa5.06□□□□□ -1.6
LIMA1-208ENST00000551691 ACEP12821 1306 aa5.06□□□□□ -1.6
LIMA1-208ENST00000551691 KLF4O43474 513 aa5.06□□□□□ -1.6
LIMA1-208ENST00000551691 CEACAM5P06731 702 aa5.06□□□□□ -1.6
LIMA1-208ENST00000551691 MPP2Q14168 576 aa5.06□□□□□ -1.6
LIMA1-208ENST00000551691 IFI16Q16666 785 aaKnown RBP5.06□□□□□ -1.6
LIMA1-208ENST00000551691 DDR2Q16832 855 aa5.06□□□□□ -1.6
LIMA1-208ENST00000551691 RPS26P11Q5JNZ5 115 aaPredicted RBP5.06□□□□□ -1.6
LIMA1-208ENST00000551691 PDZD3Q86UT5 571 aa5.06□□□□□ -1.6
LIMA1-208ENST00000551691 PHF6Q8IWS0 365 aaKnown RBP eCLIP5.06□□□□□ -1.6
LIMA1-208ENST00000551691 SULF2Q8IWU5 870 aa5.06□□□□□ -1.6
LIMA1-208ENST00000551691 MISP3Q96FF7 219 aa5.06□□□□□ -1.6
LIMA1-208ENST00000551691 RNPC3Q96LT9 517 aaKnown RBP5.06□□□□□ -1.6
LIMA1-208ENST00000551691 C14orf93Q9H972 538 aaKnown RBP5.06□□□□□ -1.6
LIMA1-208ENST00000551691 IFT57Q9NWB7 429 aa5.06□□□□□ -1.6
LIMA1-208ENST00000551691 RNF181Q9P0P0 153 aa5.06□□□□□ -1.6
LIMA1-208ENST00000551691 BRD4O60885 1362 aaPredicted RBP5.05□□□□□ -1.6
LIMA1-208ENST00000551691 WDR17Q8IZU2 1322 aa5.05□□□□□ -1.6
LIMA1-208ENST00000551691 KDM2BQ8NHM5 1336 aa5.05□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms