RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 UPF3AQ9H1J1 476 aaKnown RBP12.62□□□□□ -0.39
VPS29-208ENST00000550267 SLC28A3Q9HAS3 691 aa12.62□□□□□ -0.39
VPS29-208ENST00000550267 GOPCQ9HD26 462 aa12.62□□□□□ -0.39
VPS29-208ENST00000550267 IL23AQ9NPF7 189 aa12.62□□□□□ -0.39
VPS29-208ENST00000550267 ATP8A2Q9NTI2 1148 aa12.62□□□□□ -0.39
VPS29-208ENST00000550267 TTC28Q96AY4 2481 aa12.61□□□□□ -0.39
VPS29-208ENST00000550267 USP17L12C9JPN9 530 aa12.61□□□□□ -0.39
VPS29-208ENST00000550267 USP17L21D6R901 530 aa12.61□□□□□ -0.39
VPS29-208ENST00000550267 CD4P01730 458 aa12.61□□□□□ -0.39
VPS29-208ENST00000550267 FGBP02675 491 aa12.61□□□□□ -0.39
VPS29-208ENST00000550267 GJA9P57773 515 aa12.61□□□□□ -0.39
VPS29-208ENST00000550267 CCDC144BQ3MJ40 725 aa12.61□□□□□ -0.39
VPS29-208ENST00000550267 GNASQ5JWF2 1037 aa12.61□□□□□ -0.39
VPS29-208ENST00000550267 ITPRIPQ8IWB1 547 aa12.61□□□□□ -0.39
VPS29-208ENST00000550267 SCUBE3Q8IX30 993 aa12.61□□□□□ -0.39
VPS29-208ENST00000550267 MICALL1Q8N3F8 863 aa12.61□□□□□ -0.39
VPS29-208ENST00000550267 ZNF775Q96BV0 537 aaPredicted RBP12.61□□□□□ -0.39
VPS29-208ENST00000550267 FGD4Q96M96 766 aa12.61□□□□□ -0.39
VPS29-208ENST00000550267 SLF1Q9BQI6 1058 aa12.61□□□□□ -0.39
VPS29-208ENST00000550267 SLC6A16Q9GZN6 736 aa12.61□□□□□ -0.39
VPS29-208ENST00000550267 KANSL2Q9H9L4 492 aa12.61□□□□□ -0.39
VPS29-208ENST00000550267 SPC25Q9HBM1 224 aa12.61□□□□□ -0.39
VPS29-208ENST00000550267 UMODL1Q5DID0 1318 aa12.61□□□□□ -0.39
VPS29-208ENST00000550267 CTAGE5O15320 804 aa12.6□□□□□ -0.39
VPS29-208ENST00000550267 GDF9O60383 454 aa12.6□□□□□ -0.39
VPS29-208ENST00000550267 CHGBP05060 677 aa12.6□□□□□ -0.39
VPS29-208ENST00000550267 BMP1P13497 986 aa12.6□□□□□ -0.39
VPS29-208ENST00000550267 RABGGTBP53611 331 aa12.6□□□□□ -0.39
VPS29-208ENST00000550267 BEX3Q00994 111 aa12.6□□□□□ -0.39
VPS29-208ENST00000550267 TFF2Q03403 129 aa12.6□□□□□ -0.39
VPS29-208ENST00000550267 OTOP2Q7RTS6 562 aa12.6□□□□□ -0.39
VPS29-208ENST00000550267 AMOTL1Q8IY63 956 aa12.6□□□□□ -0.39
VPS29-208ENST00000550267 CPXCR1Q8N123 301 aa12.6□□□□□ -0.39
VPS29-208ENST00000550267 RHPN1Q8TCX5 695 aa12.6□□□□□ -0.39
VPS29-208ENST00000550267 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.6□□□□□ -0.39
VPS29-208ENST00000550267 MTIF3Q9H2K0 278 aaKnown RBP12.6□□□□□ -0.39
VPS29-208ENST00000550267 ABHD16BQ9H3Z7 469 aa12.6□□□□□ -0.39
VPS29-208ENST00000550267 MYH8P13535 1937 aa12.6□□□□□ -0.39
VPS29-208ENST00000550267 RLBP1P12271 317 aa12.59□□□□□ -0.39
VPS29-208ENST00000550267 MYOGP15173 224 aa12.59□□□□□ -0.39
VPS29-208ENST00000550267 ADD2P35612 726 aa12.59□□□□□ -0.39
VPS29-208ENST00000550267 CCL23P55773 120 aa12.59□□□□□ -0.39
VPS29-208ENST00000550267 FTSJ3Q8IY81 847 aaKnown RBP12.59□□□□□ -0.39
VPS29-208ENST00000550267 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.59□□□□□ -0.39
VPS29-208ENST00000550267 BCL11AQ9H165 835 aa12.59□□□□□ -0.39
VPS29-208ENST00000550267 HIPK3Q9H422 1215 aa12.59□□□□□ -0.39
VPS29-208ENST00000550267 RAVER2Q9HCJ3 691 aaKnown RBP12.59□□□□□ -0.39
VPS29-208ENST00000550267 C11orf97A0A1B0GVM6 126 aaPredicted RBP12.58□□□□□ -0.4
VPS29-208ENST00000550267 F5H6K3 240 aa12.58□□□□□ -0.4
VPS29-208ENST00000550267 ZBED4O75132 1171 aa12.58□□□□□ -0.4
VPS29-208ENST00000550267 KCNQ1P51787 676 aa12.58□□□□□ -0.4
VPS29-208ENST00000550267 KLRC3Q07444 240 aa12.58□□□□□ -0.4
VPS29-208ENST00000550267 HIC1Q14526 733 aa12.58□□□□□ -0.4
VPS29-208ENST00000550267 PPP2R2DQ66LE6 453 aa12.58□□□□□ -0.4
VPS29-208ENST00000550267 CTR9Q6PD62 1173 aa12.58□□□□□ -0.4
VPS29-208ENST00000550267 CXCL17Q6UXB2 119 aa12.58□□□□□ -0.4
VPS29-208ENST00000550267 ARMCX2Q7L311 632 aa12.58□□□□□ -0.4
VPS29-208ENST00000550267 ANKRD35Q8N283 1001 aa12.58□□□□□ -0.4
VPS29-208ENST00000550267 SLC43A3Q8NBI5 491 aa12.58□□□□□ -0.4
VPS29-208ENST00000550267 C1QTNF1Q9BXJ1 281 aa12.58□□□□□ -0.4
VPS29-208ENST00000550267 KATNBL1Q9H079 304 aa12.58□□□□□ -0.4
VPS29-208ENST00000550267 PAG1Q9NWQ8 432 aa12.58□□□□□ -0.4
VPS29-208ENST00000550267 SLC4A4Q9Y6R1 1079 aa12.58□□□□□ -0.4
VPS29-208ENST00000550267 ASTN1O14525 1302 aa12.58□□□□□ -0.4
VPS29-208ENST00000550267 BAZ2AQ9UIF9 1905 aaKnown RBP12.57□□□□□ -0.4
VPS29-208ENST00000550267 ATP2A1O14983 1001 aa12.57□□□□□ -0.4
VPS29-208ENST00000550267 NDUFB10O96000 172 aa12.57□□□□□ -0.4
VPS29-208ENST00000550267 NKX3-2P78367 333 aa12.57□□□□□ -0.4
VPS29-208ENST00000550267 SKIV2LQ15477 1246 aaKnown RBP12.57□□□□□ -0.4
VPS29-208ENST00000550267 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.57□□□□□ -0.4
VPS29-208ENST00000550267 METTL3Q86U44 580 aaKnown RBP12.57□□□□□ -0.4
VPS29-208ENST00000550267 CCDC144CPQ8IYA2 1237 aa12.57□□□□□ -0.4
VPS29-208ENST00000550267 STK11IPQ8N1F8 1099 aa12.57□□□□□ -0.4
VPS29-208ENST00000550267 CLASRPQ8N2M8 674 aaKnown RBP12.57□□□□□ -0.4
VPS29-208ENST00000550267 PRPF38AQ8NAV1 312 aaKnown RBP12.57□□□□□ -0.4
VPS29-208ENST00000550267 KIFC2Q96AC6 838 aa12.57□□□□□ -0.4
VPS29-208ENST00000550267 DDRGK1Q96HY6 314 aa12.57□□□□□ -0.4
VPS29-208ENST00000550267 BOLA2Q9H3K6 86 aa12.57□□□□□ -0.4
VPS29-208ENST00000550267 CTDP1Q9Y5B0 961 aaPredicted RBP12.57□□□□□ -0.4
VPS29-208ENST00000550267 ZBED9Q6R2W3 1325 aa12.57□□□□□ -0.4
VPS29-208ENST00000550267 GBF1Q92538 1859 aa12.57□□□□□ -0.4
VPS29-208ENST00000550267 CHD9Q3L8U1 2897 aa12.56□□□□□ -0.4
VPS29-208ENST00000550267 ZBBXA8MT70 800 aa12.56□□□□□ -0.4
VPS29-208ENST00000550267 RFXAPO00287 272 aa12.56□□□□□ -0.4
VPS29-208ENST00000550267 IFIT2P09913 472 aaKnown RBP12.56□□□□□ -0.4
VPS29-208ENST00000550267 RASA1P20936 1047 aa12.56□□□□□ -0.4
VPS29-208ENST00000550267 PTGS1P23219 599 aa12.56□□□□□ -0.4
VPS29-208ENST00000550267 CNTN2Q02246 1040 aa12.56□□□□□ -0.4
VPS29-208ENST00000550267 TNFAIP2Q03169 654 aa12.56□□□□□ -0.4
VPS29-208ENST00000550267 ITGA7Q13683 1181 aa12.56□□□□□ -0.4
VPS29-208ENST00000550267 HSP90AB4PQ58FF6 505 aa12.56□□□□□ -0.4
VPS29-208ENST00000550267 NOL8Q76FK4 1167 aaKnown RBP12.56□□□□□ -0.4
VPS29-208ENST00000550267 NOC4LQ9BVI4 516 aaKnown RBP12.56□□□□□ -0.4
VPS29-208ENST00000550267 TRPV6Q9H1D0 765 aa12.56□□□□□ -0.4
VPS29-208ENST00000550267 WNT8AQ9H1J5 351 aa12.56□□□□□ -0.4
VPS29-208ENST00000550267 NYAP2Q9P242 653 aa12.56□□□□□ -0.4
VPS29-208ENST00000550267 SLC4A7Q9Y6M7 1214 aa12.56□□□□□ -0.4
VPS29-208ENST00000550267 GRIN2DO15399 1336 aa12.56□□□□□ -0.4
VPS29-208ENST00000550267 ERC2O15083 957 aa12.55□□□□□ -0.4
VPS29-208ENST00000550267 B4GALT4O60513 344 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms