RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 APOA5Q6Q788 366 aa9.84□□□□□ -0.83
VPS29-203ENST00000546588 TTC6Q86TZ1 520 aa9.84□□□□□ -0.83
VPS29-203ENST00000546588 FAM83AQ86UY5 434 aa9.84□□□□□ -0.83
VPS29-203ENST00000546588 DGKHQ86XP1 1220 aa9.84□□□□□ -0.83
VPS29-203ENST00000546588 KIAA0825Q8IV33 1275 aa9.84□□□□□ -0.83
VPS29-203ENST00000546588 AMOTL1Q8IY63 956 aa9.84□□□□□ -0.83
VPS29-203ENST00000546588 JDP2Q8WYK2 163 aa9.84□□□□□ -0.83
VPS29-203ENST00000546588 ZNF287Q9HBT7 754 aa9.84□□□□□ -0.83
VPS29-203ENST00000546588 PGAP2Q9UHJ9 254 aa9.84□□□□□ -0.83
VPS29-203ENST00000546588 HDAC9Q9UKV0 1011 aa9.84□□□□□ -0.83
VPS29-203ENST00000546588 TNKSO95271 1327 aa9.83□□□□□ -0.84
VPS29-203ENST00000546588 STK36Q9NRP7 1315 aa9.83□□□□□ -0.84
VPS29-203ENST00000546588 IGKV6D-41A0A0C4DH26 115 aa9.83□□□□□ -0.84
VPS29-203ENST00000546588 SMIM22K7EJ46 135 aa9.83□□□□□ -0.84
VPS29-203ENST00000546588 GDF11O95390 407 aa9.83□□□□□ -0.84
VPS29-203ENST00000546588 PTMAP06454 111 aaKnown RBP9.83□□□□□ -0.84
VPS29-203ENST00000546588 LMNB1P20700 586 aa9.83□□□□□ -0.84
VPS29-203ENST00000546588 SCNN1DP51172 638 aa9.83□□□□□ -0.84
VPS29-203ENST00000546588 PLCD1P51178 756 aa9.83□□□□□ -0.84
VPS29-203ENST00000546588 SART3Q15020 963 aaKnown RBP9.83□□□□□ -0.84
VPS29-203ENST00000546588 CFAP100Q494V2 611 aa9.83□□□□□ -0.84
VPS29-203ENST00000546588 RCSD1Q6JBY9 416 aa9.83□□□□□ -0.84
VPS29-203ENST00000546588 TATDN1Q6P1N9 297 aa9.83□□□□□ -0.84
VPS29-203ENST00000546588 NSUN7Q8NE18 718 aaKnown RBP9.83□□□□□ -0.84
VPS29-203ENST00000546588 HELQQ8TDG4 1101 aa9.83□□□□□ -0.84
VPS29-203ENST00000546588 TCEANC2Q96MN5 208 aa9.83□□□□□ -0.84
VPS29-203ENST00000546588 ASB16Q96NS5 453 aa9.83□□□□□ -0.84
VPS29-203ENST00000546588 TSPAN10Q9H1Z9 355 aaPredicted RBP9.83□□□□□ -0.84
VPS29-203ENST00000546588 CNTNAP1P78357 1384 aa9.83□□□□□ -0.84
VPS29-203ENST00000546588 LOC285556D6RIA3 1793 aa9.83□□□□□ -0.84
VPS29-203ENST00000546588 CYP2D7A0A087X1C5 515 aa9.82□□□□□ -0.84
VPS29-203ENST00000546588 MINDY4BA8MYZ0 360 aa9.82□□□□□ -0.84
VPS29-203ENST00000546588 ARHGEF15O94989 841 aa9.82□□□□□ -0.84
VPS29-203ENST00000546588 CTDNEP1O95476 244 aa9.82□□□□□ -0.84
VPS29-203ENST00000546588 CYP2D6P10635 497 aa9.82□□□□□ -0.84
VPS29-203ENST00000546588 HMGN5P82970 282 aaKnown RBP9.82□□□□□ -0.84
VPS29-203ENST00000546588 TAGLNQ01995 201 aaKnown RBP9.82□□□□□ -0.84
VPS29-203ENST00000546588 DHX9Q08211 1270 aaKnown RBP9.82□□□□□ -0.84
VPS29-203ENST00000546588 APOBRQ0VD83 1088 aa9.82□□□□□ -0.84
VPS29-203ENST00000546588 NFIAQ12857 509 aa9.82□□□□□ -0.84
VPS29-203ENST00000546588 NTRK3Q16288 839 aa9.82□□□□□ -0.84
VPS29-203ENST00000546588 TBCELQ5QJ74 424 aa9.82□□□□□ -0.84
VPS29-203ENST00000546588 IQCA1Q86XH1 822 aa9.82□□□□□ -0.84
VPS29-203ENST00000546588 MAPKAPK5Q8IW41 473 aa9.82□□□□□ -0.84
VPS29-203ENST00000546588 GPC2Q8N158 579 aa9.82□□□□□ -0.84
VPS29-203ENST00000546588 ENAHQ8N8S7 591 aaPredicted RBP9.82□□□□□ -0.84
VPS29-203ENST00000546588 ZNF784Q8NCA9 323 aaPredicted RBP9.82□□□□□ -0.84
VPS29-203ENST00000546588 NEDD1Q8NHV4 660 aa9.82□□□□□ -0.84
VPS29-203ENST00000546588 PRMT6Q96LA8 375 aaPredicted RBP9.82□□□□□ -0.84
VPS29-203ENST00000546588 ZSCAN10Q96SZ4 725 aaPredicted RBP9.82□□□□□ -0.84
VPS29-203ENST00000546588 SLKQ9H2G2 1235 aaPredicted RBP9.82□□□□□ -0.84
VPS29-203ENST00000546588 DNAJC18Q9H819 358 aa9.82□□□□□ -0.84
VPS29-203ENST00000546588 USP40Q9NVE5 1235 aa9.82□□□□□ -0.84
VPS29-203ENST00000546588 SERPINB13Q9UIV8 391 aa9.82□□□□□ -0.84
VPS29-203ENST00000546588 SYNPO2Q9UMS6 1093 aa9.82□□□□□ -0.84
VPS29-203ENST00000546588 ZDHHC9Q9Y397 364 aa9.82□□□□□ -0.84
VPS29-203ENST00000546588 RBBP6Q7Z6E9 1792 aaKnown RBP9.82□□□□□ -0.84
VPS29-203ENST00000546588 KLF18A0A0U1RQI7 1052 aa9.81□□□□□ -0.84
VPS29-203ENST00000546588 F8W031 263 aaPredicted RBP9.81□□□□□ -0.84
VPS29-203ENST00000546588 RNF225M0QZC1 329 aaPredicted RBP9.81□□□□□ -0.84
VPS29-203ENST00000546588 DHX16O60231 1041 aaKnown RBP9.81□□□□□ -0.84
VPS29-203ENST00000546588 PPP1R12BO60237 982 aaPredicted RBP9.81□□□□□ -0.84
VPS29-203ENST00000546588 RAD17O75943 681 aa9.81□□□□□ -0.84
VPS29-203ENST00000546588 DDAH1O94760 285 aa9.81□□□□□ -0.84
VPS29-203ENST00000546588 FAM13AO94988 1023 aa9.81□□□□□ -0.84
VPS29-203ENST00000546588 INHAP05111 366 aa9.81□□□□□ -0.84
VPS29-203ENST00000546588 CALM1P0DP23 149 aa9.81□□□□□ -0.84
VPS29-203ENST00000546588 CALM2P0DP24 149 aa9.81□□□□□ -0.84
VPS29-203ENST00000546588 CALM3P0DP25 149 aa9.81□□□□□ -0.84
VPS29-203ENST00000546588 SHMT1P34896 483 aa9.81□□□□□ -0.84
VPS29-203ENST00000546588 CDK8P49336 464 aa9.81□□□□□ -0.84
VPS29-203ENST00000546588 TROAPQ12815 778 aa9.81□□□□□ -0.84
VPS29-203ENST00000546588 ECM1Q16610 540 aa9.81□□□□□ -0.84
VPS29-203ENST00000546588 FAM151AQ8WW52 585 aa9.81□□□□□ -0.84
VPS29-203ENST00000546588 LRRC2Q9BYS8 371 aa9.81□□□□□ -0.84
VPS29-203ENST00000546588 ETNK1Q9HBU6 452 aa9.81□□□□□ -0.84
VPS29-203ENST00000546588 IL17RBQ9NRM6 502 aa9.81□□□□□ -0.84
VPS29-203ENST00000546588 PI4KBQ9UBF8 816 aa9.81□□□□□ -0.84
VPS29-203ENST00000546588 ZNF541Q9H0D2 1346 aa9.81□□□□□ -0.84
VPS29-203ENST00000546588 WNT10BO00744 389 aa9.8□□□□□ -0.84
VPS29-203ENST00000546588 IFIT3O14879 490 aaKnown RBP9.8□□□□□ -0.84
VPS29-203ENST00000546588 POLR3DP05423 398 aaPredicted RBP9.8□□□□□ -0.84
VPS29-203ENST00000546588 HSP90AA1P07900 732 aaKnown RBP9.8□□□□□ -0.84
VPS29-203ENST00000546588 PDCP20941 246 aa9.8□□□□□ -0.84
VPS29-203ENST00000546588 MPSTP25325 297 aa9.8□□□□□ -0.84
VPS29-203ENST00000546588 GJB2P29033 226 aa9.8□□□□□ -0.84
VPS29-203ENST00000546588 WTAPQ15007 396 aa9.8□□□□□ -0.84
VPS29-203ENST00000546588 TMEM67Q5HYA8 995 aa9.8□□□□□ -0.84
VPS29-203ENST00000546588 CHST3Q7LGC8 479 aa9.8□□□□□ -0.84
VPS29-203ENST00000546588 FOXP4Q8IVH2 680 aaPredicted RBP9.8□□□□□ -0.84
VPS29-203ENST00000546588 CCDC83Q8IWF9 413 aa9.8□□□□□ -0.84
VPS29-203ENST00000546588 COL26A1Q96A83 441 aa9.8□□□□□ -0.84
VPS29-203ENST00000546588 CCDC17Q96LX7 622 aa9.8□□□□□ -0.84
VPS29-203ENST00000546588 UBAC1Q9BSL1 405 aa9.8□□□□□ -0.84
VPS29-203ENST00000546588 MYOZ2Q9NPC6 264 aa9.8□□□□□ -0.84
VPS29-203ENST00000546588 INCENPQ9NQS7 918 aa9.8□□□□□ -0.84
VPS29-203ENST00000546588 RAB6BQ9NRW1 208 aa9.8□□□□□ -0.84
VPS29-203ENST00000546588 HERC5Q9UII4 1024 aaKnown RBP9.8□□□□□ -0.84
VPS29-203ENST00000546588 PCDHAC2Q9Y5I4 1007 aa9.8□□□□□ -0.84
VPS29-203ENST00000546588 PITPNM2Q9BZ72 1349 aa9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms