RNA–Protein interactions for RNA: ENST00000546164.5

YBX3-217, Transcript of Y-box binding protein 3, human

TSL 2

Gene YBX3, Length 805 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-217	ENST00000546164	NFXL1	Q6ZNB6	911 aa		13.79	□□□□□ -0.2
YBX3-217	ENST00000546164	MCF2L2	Q86YR7	1114 aa		13.79	□□□□□ -0.2
YBX3-217	ENST00000546164	DNER	Q8NFT8	737 aa		13.79	□□□□□ -0.2
YBX3-217	ENST00000546164	PURB	Q96QR8	312 aa	Known RBP	13.79	□□□□□ -0.2
YBX3-217	ENST00000546164	SPZ1	Q9BXG8	430 aa		13.79	□□□□□ -0.2
YBX3-217	ENST00000546164	SNX14	Q9Y5W7	946 aa		13.79	□□□□□ -0.2
YBX3-217	ENST00000546164	SLC12A7	Q9Y666	1083 aa		13.79	□□□□□ -0.2
YBX3-217	ENST00000546164	DNAH12	Q6ZR08	3092 aa		13.79	□□□□□ -0.2
YBX3-217	ENST00000546164	PNMA6F	A0A0J9YX94	578 aa		13.78	□□□□□ -0.2
YBX3-217	ENST00000546164	ADAMTS4	O75173	837 aa		13.78	□□□□□ -0.2
YBX3-217	ENST00000546164	DUSP11	O75319	330 aa	Known RBP	13.78	□□□□□ -0.2
YBX3-217	ENST00000546164	EDNRB	P24530	442 aa		13.78	□□□□□ -0.2
YBX3-217	ENST00000546164	CALML3	P27482	149 aa		13.78	□□□□□ -0.2
YBX3-217	ENST00000546164	RCAN1	P53805	252 aa		13.78	□□□□□ -0.2
YBX3-217	ENST00000546164	NKX3-2	P78367	333 aa		13.78	□□□□□ -0.2
YBX3-217	ENST00000546164	LRRC41	Q15345	812 aa		13.78	□□□□□ -0.2
YBX3-217	ENST00000546164	SAMD3	Q8N6K7	520 aa		13.78	□□□□□ -0.2
YBX3-217	ENST00000546164	SYTL5	Q8TDW5	730 aa	Predicted RBP	13.78	□□□□□ -0.2
YBX3-217	ENST00000546164	DPF3	Q92784	378 aa		13.78	□□□□□ -0.2
YBX3-217	ENST00000546164	PIGS	Q96S52	555 aa		13.78	□□□□□ -0.2
YBX3-217	ENST00000546164	MYL10	Q9BUA6	226 aa		13.78	□□□□□ -0.2
YBX3-217	ENST00000546164	LRRC2	Q9BYS8	371 aa		13.78	□□□□□ -0.2
YBX3-217	ENST00000546164	VTA1	Q9NP79	307 aa		13.78	□□□□□ -0.2
YBX3-217	ENST00000546164	XPNPEP3	Q9NQH7	507 aa		13.78	□□□□□ -0.2
YBX3-217	ENST00000546164	MAP3K20	Q9NYL2	800 aa	Known RBP	13.78	□□□□□ -0.2
YBX3-217	ENST00000546164	OPLAH	O14841	1288 aa		13.77	□□□□□ -0.21
YBX3-217	ENST00000546164	LCT	P09848	1927 aa		13.77	□□□□□ -0.21
YBX3-217	ENST00000546164	CCDC144B	Q3MJ40	725 aa		13.77	□□□□□ -0.21
YBX3-217	ENST00000546164	APOA5	Q6Q788	366 aa		13.77	□□□□□ -0.21
YBX3-217	ENST00000546164	RNF180	Q86T96	592 aa		13.77	□□□□□ -0.21
YBX3-217	ENST00000546164	HOMER1	Q86YM7	354 aa		13.77	□□□□□ -0.21
YBX3-217	ENST00000546164	FBXL16	Q8N461	479 aa		13.77	□□□□□ -0.21
YBX3-217	ENST00000546164	TBC1D5	Q92609	795 aa		13.77	□□□□□ -0.21
YBX3-217	ENST00000546164	MPHOSPH6	Q99547	160 aa	Known RBP	13.77	□□□□□ -0.21
YBX3-217	ENST00000546164	USP26	Q9BXU7	913 aa		13.77	□□□□□ -0.21
YBX3-217	ENST00000546164	PCDHA1	Q9Y5I3	950 aa		13.77	□□□□□ -0.21
YBX3-217	ENST00000546164	NR2E3	Q9Y5X4	410 aa		13.77	□□□□□ -0.21
YBX3-217	ENST00000546164	MCM3AP	O60318	1980 aa		13.76	□□□□□ -0.21
YBX3-217	ENST00000546164	SYNRG	Q9UMZ2	1314 aa		13.76	□□□□□ -0.21
YBX3-217	ENST00000546164		B4DLN1	442 aa		13.76	□□□□□ -0.21
YBX3-217	ENST00000546164	KBTBD13	C9JR72	458 aa		13.76	□□□□□ -0.21
YBX3-217	ENST00000546164	ADCY6	O43306	1168 aa		13.76	□□□□□ -0.21
YBX3-217	ENST00000546164	EVI5	O60447	810 aa		13.76	□□□□□ -0.21
YBX3-217	ENST00000546164	PSMA5	P28066	241 aa		13.76	□□□□□ -0.21
YBX3-217	ENST00000546164	CST5	P28325	142 aa	Predicted RBP	13.76	□□□□□ -0.21
YBX3-217	ENST00000546164	HSD17B4	P51659	736 aa		13.76	□□□□□ -0.21
YBX3-217	ENST00000546164	MRPL12	P52815	198 aa	Known RBP	13.76	□□□□□ -0.21
YBX3-217	ENST00000546164	GJC2	Q5T442	439 aa	Predicted RBP	13.76	□□□□□ -0.21
YBX3-217	ENST00000546164	TAPT1	Q6NXT6	567 aa		13.76	□□□□□ -0.21
YBX3-217	ENST00000546164	SYNE3	Q6ZMZ3	975 aa		13.76	□□□□□ -0.21
YBX3-217	ENST00000546164	SRBD1	Q8N5C6	995 aa	Known RBP	13.76	□□□□□ -0.21
YBX3-217	ENST00000546164	FANCB	Q8NB91	859 aa		13.76	□□□□□ -0.21
YBX3-217	ENST00000546164	KLHDC9	Q8NEP7	349 aa		13.76	□□□□□ -0.21
YBX3-217	ENST00000546164	LENG1	Q96BZ8	264 aa	Predicted RBP	13.76	□□□□□ -0.21
YBX3-217	ENST00000546164	TCEANC2	Q96MN5	208 aa		13.76	□□□□□ -0.21
YBX3-217	ENST00000546164	JAKMIP1	Q96N16	626 aa	Known RBP	13.76	□□□□□ -0.21
YBX3-217	ENST00000546164	TSEN34	Q9BSV6	310 aa	Known RBP	13.76	□□□□□ -0.21
YBX3-217	ENST00000546164	AGXT2	Q9BYV1	514 aa		13.76	□□□□□ -0.21
YBX3-217	ENST00000546164	UPF3A	Q9H1J1	476 aa	Known RBP	13.76	□□□□□ -0.21
YBX3-217	ENST00000546164	COL20A1	Q9P218	1284 aa		13.76	□□□□□ -0.21
YBX3-217	ENST00000546164	PHF24	Q9UPV7	400 aa		13.76	□□□□□ -0.21
YBX3-217	ENST00000546164	BAZ2B	Q9UIF8	2168 aa	Known RBP	13.76	□□□□□ -0.21
YBX3-217	ENST00000546164	RANBP2	P49792	3224 aa	Known RBP	13.76	□□□□□ -0.21
YBX3-217	ENST00000546164	RBM47	A0AV96	593 aa	Known RBP	13.75	□□□□□ -0.21
YBX3-217	ENST00000546164		H0YGN5	161 aa		13.75	□□□□□ -0.21
YBX3-217	ENST00000546164	PLEKHA8P1	O95397	391 aa		13.75	□□□□□ -0.21
YBX3-217	ENST00000546164	PGK1	P00558	417 aa		13.75	□□□□□ -0.21
YBX3-217	ENST00000546164	RXRA	P19793	462 aa		13.75	□□□□□ -0.21
YBX3-217	ENST00000546164	ADCYAP1R1	P41586	468 aa		13.75	□□□□□ -0.21
YBX3-217	ENST00000546164	GJA9	P57773	515 aa		13.75	□□□□□ -0.21
YBX3-217	ENST00000546164	IQSEC1	Q6DN90	963 aa		13.75	□□□□□ -0.21
YBX3-217	ENST00000546164	CCSAP	Q6IQ19	270 aa	Predicted RBP	13.75	□□□□□ -0.21
YBX3-217	ENST00000546164	BLOC1S2	Q6QNY1	142 aa		13.75	□□□□□ -0.21
YBX3-217	ENST00000546164	TMTC3	Q6ZXV5	915 aa		13.75	□□□□□ -0.21
YBX3-217	ENST00000546164	MICU3	Q86XE3	530 aa		13.75	□□□□□ -0.21
YBX3-217	ENST00000546164	FBXO16	Q8IX29	292 aa	Predicted RBP	13.75	□□□□□ -0.21
YBX3-217	ENST00000546164	NSUN6	Q8TEA1	469 aa	Known RBP	13.75	□□□□□ -0.21
YBX3-217	ENST00000546164	RRP36	Q96EU6	259 aa	Known RBP	13.75	□□□□□ -0.21
YBX3-217	ENST00000546164	IWS1	Q96ST2	819 aa		13.75	□□□□□ -0.21
YBX3-217	ENST00000546164	SENP6	Q9GZR1	1112 aa	Predicted RBP	13.75	□□□□□ -0.21
YBX3-217	ENST00000546164	BRPF3	Q9ULD4	1205 aa		13.75	□□□□□ -0.21
YBX3-217	ENST00000546164	GNE	Q9Y223	722 aa	Known RBP	13.75	□□□□□ -0.21
YBX3-217	ENST00000546164	DDX49	Q9Y6V7	483 aa	Known RBP	13.75	□□□□□ -0.21
YBX3-217	ENST00000546164	LRRC37A2	A6NM11	1700 aa		13.75	□□□□□ -0.21
YBX3-217	ENST00000546164	ZBTB43	O43298	467 aa		13.74	□□□□□ -0.21
YBX3-217	ENST00000546164	RPS6KB1	P23443	525 aa		13.74	□□□□□ -0.21
YBX3-217	ENST00000546164	TNFAIP2	Q03169	654 aa		13.74	□□□□□ -0.21
YBX3-217	ENST00000546164	PDE4D	Q08499	809 aa		13.74	□□□□□ -0.21
YBX3-217	ENST00000546164	SNX17	Q15036	470 aa		13.74	□□□□□ -0.21
YBX3-217	ENST00000546164	PPP2R5B	Q15173	497 aa		13.74	□□□□□ -0.21
YBX3-217	ENST00000546164	LRRC26	Q2I0M4	334 aa		13.74	□□□□□ -0.21
YBX3-217	ENST00000546164	C1orf53	Q5VUE5	145 aa		13.74	□□□□□ -0.21
YBX3-217	ENST00000546164	TAAR1	Q96RJ0	339 aa		13.74	□□□□□ -0.21
YBX3-217	ENST00000546164	SPC25	Q9HBM1	224 aa		13.74	□□□□□ -0.21
YBX3-217	ENST00000546164	PDGFC	Q9NRA1	345 aa		13.74	□□□□□ -0.21
YBX3-217	ENST00000546164	RBM28	Q9NW13	759 aa	Known RBP	13.74	□□□□□ -0.21
YBX3-217	ENST00000546164		Q9Y3F1	56 aa		13.74	□□□□□ -0.21
YBX3-217	ENST00000546164	MYH6	P13533	1939 aa		13.73	□□□□□ -0.21
YBX3-217	ENST00000546164	KLF18	A0A0U1RQI7	1052 aa		13.73	□□□□□ -0.21
YBX3-217	ENST00000546164	C11orf97	A0A1B0GVM6	126 aa	Predicted RBP	13.73	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms