RNA–Protein interactions for RNA: ENST00000544989.1

HDAC4-216, Transcript of histone deacetylase 4, human

TSL 5

Gene HDAC4, Length 342 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC4-216	ENST00000544989	ANTXR2	P58335	489 aa		13.72	□□□□□ -0.21
HDAC4-216	ENST00000544989	RPS6	P62753	249 aa	Known RBP	13.72	□□□□□ -0.21
HDAC4-216	ENST00000544989	TNFAIP2	Q03169	654 aa		13.72	□□□□□ -0.21
HDAC4-216	ENST00000544989	CHRDL2	Q6WN34	429 aa		13.72	□□□□□ -0.21
HDAC4-216	ENST00000544989	NFXL1	Q6ZNB6	911 aa		13.72	□□□□□ -0.21
HDAC4-216	ENST00000544989	STAG2	Q8N3U4	1231 aa		13.72	□□□□□ -0.21
HDAC4-216	ENST00000544989	SLC17A8	Q8NDX2	589 aa		13.72	□□□□□ -0.21
HDAC4-216	ENST00000544989	MTMR8	Q96EF0	704 aa		13.72	□□□□□ -0.21
HDAC4-216	ENST00000544989	UPF3A	Q9H1J1	476 aa	Known RBP	13.72	□□□□□ -0.21
HDAC4-216	ENST00000544989	RIOX1	Q9H6W3	641 aa		13.72	□□□□□ -0.21
HDAC4-216	ENST00000544989	LY9	Q9HBG7	655 aa		13.72	□□□□□ -0.21
HDAC4-216	ENST00000544989	VAT1L	Q9HCJ6	419 aa		13.72	□□□□□ -0.21
HDAC4-216	ENST00000544989	PRKAG2	Q9UGJ0	569 aa		13.72	□□□□□ -0.21
HDAC4-216	ENST00000544989	TAF6L	Q9Y6J9	622 aa		13.72	□□□□□ -0.21
HDAC4-216	ENST00000544989	SMCHD1	A6NHR9	2005 aa		13.72	□□□□□ -0.21
HDAC4-216	ENST00000544989	SYNRG	Q9UMZ2	1314 aa		13.71	□□□□□ -0.21
HDAC4-216	ENST00000544989	SH2B2	O14492	632 aa	Predicted RBP	13.71	□□□□□ -0.21
HDAC4-216	ENST00000544989	ADAMTS4	O75173	837 aa		13.71	□□□□□ -0.21
HDAC4-216	ENST00000544989	PGK1	P00558	417 aa		13.71	□□□□□ -0.21
HDAC4-216	ENST00000544989	GJA9	P57773	515 aa		13.71	□□□□□ -0.21
HDAC4-216	ENST00000544989	NKX3-2	P78367	333 aa		13.71	□□□□□ -0.21
HDAC4-216	ENST00000544989	PDE4D	Q08499	809 aa		13.71	□□□□□ -0.21
HDAC4-216	ENST00000544989	LRRC26	Q2I0M4	334 aa		13.71	□□□□□ -0.21
HDAC4-216	ENST00000544989	SLC39A5	Q6ZMH5	540 aa		13.71	□□□□□ -0.21
HDAC4-216	ENST00000544989	SYNE3	Q6ZMZ3	975 aa		13.71	□□□□□ -0.21
HDAC4-216	ENST00000544989	NOL8	Q76FK4	1167 aa	Known RBP	13.71	□□□□□ -0.21
HDAC4-216	ENST00000544989	CHST3	Q7LGC8	479 aa		13.71	□□□□□ -0.21
HDAC4-216	ENST00000544989	SKAP1	Q86WV1	359 aa		13.71	□□□□□ -0.21
HDAC4-216	ENST00000544989	ZNF654	Q8IZM8	581 aa		13.71	□□□□□ -0.21
HDAC4-216	ENST00000544989	NEK1	Q96PY6	1258 aa		13.71	□□□□□ -0.21
HDAC4-216	ENST00000544989	SEZ6L	Q9BYH1	1024 aa		13.71	□□□□□ -0.21
HDAC4-216	ENST00000544989	KATNBL1	Q9H079	304 aa		13.71	□□□□□ -0.21
HDAC4-216	ENST00000544989	CPVL	Q9H3G5	476 aa		13.71	□□□□□ -0.21
HDAC4-216	ENST00000544989	PNMA6F	A0A0J9YX94	578 aa		13.7	□□□□□ -0.22
HDAC4-216	ENST00000544989	NKRF	O15226	690 aa	Known RBP eCLIP	13.7	□□□□□ -0.22	9e-7	■■■□□ 17.7
HDAC4-216	ENST00000544989	C6orf222	P0C671	652 aa	Predicted RBP	13.7	□□□□□ -0.22
HDAC4-216	ENST00000544989	ADCYAP1R1	P41586	468 aa		13.7	□□□□□ -0.22
HDAC4-216	ENST00000544989	SNX17	Q15036	470 aa		13.7	□□□□□ -0.22
HDAC4-216	ENST00000544989	SLC30A10	Q6XR72	485 aa		13.7	□□□□□ -0.22
HDAC4-216	ENST00000544989	SGMS1	Q86VZ5	419 aa		13.7	□□□□□ -0.22
HDAC4-216	ENST00000544989	KLHDC9	Q8NEP7	349 aa		13.7	□□□□□ -0.22
HDAC4-216	ENST00000544989	NSUN6	Q8TEA1	469 aa	Known RBP	13.7	□□□□□ -0.22
HDAC4-216	ENST00000544989	IWS1	Q96ST2	819 aa		13.7	□□□□□ -0.22
HDAC4-216	ENST00000544989	SPZ1	Q9BXG8	430 aa		13.7	□□□□□ -0.22
HDAC4-216	ENST00000544989	AP5M1	Q9H0R1	490 aa		13.7	□□□□□ -0.22
HDAC4-216	ENST00000544989	PCDHA1	Q9Y5I3	950 aa		13.7	□□□□□ -0.22
HDAC4-216	ENST00000544989	SLC12A7	Q9Y666	1083 aa		13.7	□□□□□ -0.22
HDAC4-216	ENST00000544989	ELP1	O95163	1332 aa		13.69	□□□□□ -0.22
HDAC4-216	ENST00000544989	MROH7	Q68CQ1	1323 aa		13.69	□□□□□ -0.22
HDAC4-216	ENST00000544989		A0A1W2PQ45	241 aa	Predicted RBP	13.69	□□□□□ -0.22
HDAC4-216	ENST00000544989		A0A1W2PQY0	241 aa		13.69	□□□□□ -0.22
HDAC4-216	ENST00000544989	EIF5B	O60841	1220 aa	Known RBP	13.69	□□□□□ -0.22
HDAC4-216	ENST00000544989	CABYR	O75952	493 aa		13.69	□□□□□ -0.22
HDAC4-216	ENST00000544989	EDNRB	P24530	442 aa		13.69	□□□□□ -0.22
HDAC4-216	ENST00000544989	ATN1	P54259	1190 aa	Predicted RBP	13.69	□□□□□ -0.22
HDAC4-216	ENST00000544989	RTP1	P59025	263 aa		13.69	□□□□□ -0.22
HDAC4-216	ENST00000544989	GHRHR	Q02643	423 aa		13.69	□□□□□ -0.22
HDAC4-216	ENST00000544989	BRDT	Q58F21	947 aa	Predicted RBP	13.69	□□□□□ -0.22
HDAC4-216	ENST00000544989	DHX32	Q7L7V1	743 aa	Known RBP	13.69	□□□□□ -0.22
HDAC4-216	ENST00000544989	RRP36	Q96EU6	259 aa	Known RBP	13.69	□□□□□ -0.22
HDAC4-216	ENST00000544989	GLT1D1	Q96MS3	346 aa		13.69	□□□□□ -0.22
HDAC4-216	ENST00000544989	SEC63	Q9UGP8	760 aa	Known RBP	13.69	□□□□□ -0.22
HDAC4-216	ENST00000544989	GNE	Q9Y223	722 aa	Known RBP	13.69	□□□□□ -0.22
HDAC4-216	ENST00000544989	MCM3AP	O60318	1980 aa		13.69	□□□□□ -0.22
HDAC4-216	ENST00000544989	ASTN1	O14525	1302 aa		13.68	□□□□□ -0.22
HDAC4-216	ENST00000544989	RBM47	A0AV96	593 aa	Known RBP	13.68	□□□□□ -0.22
HDAC4-216	ENST00000544989	BMP8B	P34820	402 aa		13.68	□□□□□ -0.22
HDAC4-216	ENST00000544989	HSD17B4	P51659	736 aa		13.68	□□□□□ -0.22
HDAC4-216	ENST00000544989	ACLY	P53396	1101 aa		13.68	□□□□□ -0.22
HDAC4-216	ENST00000544989	KCNA10	Q16322	511 aa		13.68	□□□□□ -0.22
HDAC4-216	ENST00000544989	DUSP28	Q4G0W2	176 aa		13.68	□□□□□ -0.22
HDAC4-216	ENST00000544989	GNAS	Q5JWF2	1037 aa		13.68	□□□□□ -0.22
HDAC4-216	ENST00000544989	CCSAP	Q6IQ19	270 aa	Predicted RBP	13.68	□□□□□ -0.22
HDAC4-216	ENST00000544989	GPR153	Q6NV75	609 aa		13.68	□□□□□ -0.22
HDAC4-216	ENST00000544989	TAPT1	Q6NXT6	567 aa		13.68	□□□□□ -0.22
HDAC4-216	ENST00000544989	TLK2	Q86UE8	772 aa		13.68	□□□□□ -0.22
HDAC4-216	ENST00000544989	HOMER1	Q86YM7	354 aa		13.68	□□□□□ -0.22
HDAC4-216	ENST00000544989	FBXO16	Q8IX29	292 aa	Predicted RBP	13.68	□□□□□ -0.22
HDAC4-216	ENST00000544989	SYTL5	Q8TDW5	730 aa	Predicted RBP	13.68	□□□□□ -0.22
HDAC4-216	ENST00000544989	SCFD2	Q8WU76	684 aa		13.68	□□□□□ -0.22
HDAC4-216	ENST00000544989	TOX2	Q96NM4	488 aa		13.68	□□□□□ -0.22
HDAC4-216	ENST00000544989	SENP2	Q9HC62	589 aa		13.68	□□□□□ -0.22
HDAC4-216	ENST00000544989	STARD7	Q9NQZ5	370 aa		13.68	□□□□□ -0.22
HDAC4-216	ENST00000544989	ATP11B	Q9Y2G3	1177 aa		13.68	□□□□□ -0.22
HDAC4-216	ENST00000544989	DNAH12	Q6ZR08	3092 aa		13.68	□□□□□ -0.22
HDAC4-216	ENST00000544989	MYH6	P13533	1939 aa		13.67	□□□□□ -0.22
HDAC4-216	ENST00000544989	ALPK3	Q96L96	1907 aa		13.67	□□□□□ -0.22
HDAC4-216	ENST00000544989	GCOM1	H8Y6P7	765 aa	Predicted RBP	13.67	□□□□□ -0.22
HDAC4-216	ENST00000544989	CFB	P00751	764 aa		13.67	□□□□□ -0.22
HDAC4-216	ENST00000544989	POLR2M	P0CAP2	368 aa		13.67	□□□□□ -0.22
HDAC4-216	ENST00000544989	PSMA5	P28066	241 aa		13.67	□□□□□ -0.22
HDAC4-216	ENST00000544989	RCAN1	P53805	252 aa		13.67	□□□□□ -0.22
HDAC4-216	ENST00000544989	PPP2R5B	Q15173	497 aa		13.67	□□□□□ -0.22
HDAC4-216	ENST00000544989	STXBP2	Q15833	593 aa		13.67	□□□□□ -0.22
HDAC4-216	ENST00000544989	FSCN1	Q16658	493 aa	Known RBP	13.67	□□□□□ -0.22
HDAC4-216	ENST00000544989	ARHGEF16	Q5VV41	709 aa		13.67	□□□□□ -0.22
HDAC4-216	ENST00000544989	EEPD1	Q7L9B9	569 aa		13.67	□□□□□ -0.22
HDAC4-216	ENST00000544989	KCNB2	Q92953	911 aa		13.67	□□□□□ -0.22
HDAC4-216	ENST00000544989	FERMT2	Q96AC1	680 aa		13.67	□□□□□ -0.22
HDAC4-216	ENST00000544989	LENG1	Q96BZ8	264 aa	Predicted RBP	13.67	□□□□□ -0.22

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