RNA–Protein interactions for RNA: ENST00000543995.5

TNFRSF1A-216, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 5

Gene TNFRSF1A, Length 1,531 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-216ENST00000543995 RAET1EQ8TD07 263 aa16.66■□□□□ 0.26
TNFRSF1A-216ENST00000543995 TBC1D5Q92609 795 aa16.66■□□□□ 0.26
TNFRSF1A-216ENST00000543995 CUL5Q93034 780 aa16.66■□□□□ 0.26
TNFRSF1A-216ENST00000543995 AIFM3Q96NN9 605 aa16.66■□□□□ 0.26
TNFRSF1A-216ENST00000543995 PSTPIP2Q9H939 334 aa16.66■□□□□ 0.26
TNFRSF1A-216ENST00000543995 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.66■□□□□ 0.26
TNFRSF1A-216ENST00000543995 SMCO2A6NFE2 343 aa16.65■□□□□ 0.26
TNFRSF1A-216ENST00000543995 GCOM1H8Y6P7 765 aaPredicted RBP16.65■□□□□ 0.26
TNFRSF1A-216ENST00000543995 OPLAHO14841 1288 aa16.65■□□□□ 0.26
TNFRSF1A-216ENST00000543995 COBLO75128 1261 aa16.65■□□□□ 0.26
TNFRSF1A-216ENST00000543995 POLR2MP0CAP2 368 aa16.65■□□□□ 0.26
TNFRSF1A-216ENST00000543995 FDPSP14324 419 aaKnown RBP16.65■□□□□ 0.26
TNFRSF1A-216ENST00000543995 TYW1BQ6NUM6 668 aa16.65■□□□□ 0.26
TNFRSF1A-216ENST00000543995 SMARCC2Q8TAQ2 1214 aa16.65■□□□□ 0.26
TNFRSF1A-216ENST00000543995 APBA2Q99767 749 aa16.65■□□□□ 0.26
TNFRSF1A-216ENST00000543995 ALG1Q9BT22 464 aa16.65■□□□□ 0.26
TNFRSF1A-216ENST00000543995 HSP90AA1P07900 732 aaKnown RBP16.65■□□□□ 0.26
TNFRSF1A-216ENST00000543995 HOXA13P31271 388 aaPredicted RBP16.65■□□□□ 0.26
TNFRSF1A-216ENST00000543995 ADCY7P51828 1080 aa16.65■□□□□ 0.26
TNFRSF1A-216ENST00000543995 NLRP5P59047 1200 aa16.65■□□□□ 0.26
TNFRSF1A-216ENST00000543995 USP6NLQ92738 828 aa16.65■□□□□ 0.26
TNFRSF1A-216ENST00000543995 MAF1Q9H063 256 aa16.65■□□□□ 0.26
TNFRSF1A-216ENST00000543995 SH3GLB2Q9NR46 395 aa16.65■□□□□ 0.26
TNFRSF1A-216ENST00000543995 MAP3K20Q9NYL2 800 aaKnown RBP16.65■□□□□ 0.26
TNFRSF1A-216ENST00000543995 SMC3Q9UQE7 1217 aa16.65■□□□□ 0.26
TNFRSF1A-216ENST00000543995 PTPN22Q9Y2R2 807 aa16.65■□□□□ 0.26
TNFRSF1A-216ENST00000543995 DNAJC25-GNG10A0A024R161 153 aa16.64■□□□□ 0.25
TNFRSF1A-216ENST00000543995 MRPL12P52815 198 aaKnown RBP16.64■□□□□ 0.25
TNFRSF1A-216ENST00000543995 FOSBP53539 338 aa16.64■□□□□ 0.25
TNFRSF1A-216ENST00000543995 CNTN2Q02246 1040 aa16.64■□□□□ 0.25
TNFRSF1A-216ENST00000543995 CUL4AQ13619 759 aa16.64■□□□□ 0.25
TNFRSF1A-216ENST00000543995 SAMD3Q8N6K7 520 aa16.64■□□□□ 0.25
TNFRSF1A-216ENST00000543995 NPLOC4Q8TAT6 608 aa16.64■□□□□ 0.25
TNFRSF1A-216ENST00000543995 PURBQ96QR8 312 aaKnown RBP16.64■□□□□ 0.25
TNFRSF1A-216ENST00000543995 C6orf50Q9HD87 102 aa16.64■□□□□ 0.25
TNFRSF1A-216ENST00000543995 RIC8AQ9NPQ8 531 aa16.64■□□□□ 0.25
TNFRSF1A-216ENST00000543995 LCTP09848 1927 aa16.63■□□□□ 0.25
TNFRSF1A-216ENST00000543995 GNA11P29992 359 aa16.63■□□□□ 0.25
TNFRSF1A-216ENST00000543995 HSD17B4P51659 736 aa16.63■□□□□ 0.25
TNFRSF1A-216ENST00000543995 IRF5Q13568 498 aa16.63■□□□□ 0.25
TNFRSF1A-216ENST00000543995 ZNF792Q3KQV3 632 aa16.63■□□□□ 0.25
TNFRSF1A-216ENST00000543995 USP17L6PQ6QN14 398 aa16.63■□□□□ 0.25
TNFRSF1A-216ENST00000543995 FCHSD1Q86WN1 690 aa16.63■□□□□ 0.25
TNFRSF1A-216ENST00000543995 FAM133AQ8N9E0 248 aa16.63■□□□□ 0.25
TNFRSF1A-216ENST00000543995 SYTL5Q8TDW5 730 aaPredicted RBP16.63■□□□□ 0.25
TNFRSF1A-216ENST00000543995 MAML3Q96JK9 1138 aa16.63■□□□□ 0.25
TNFRSF1A-216ENST00000543995 ZMYND12Q9H0C1 365 aa16.63■□□□□ 0.25
TNFRSF1A-216ENST00000543995 GLT8D2Q9H1C3 349 aa16.63■□□□□ 0.25
TNFRSF1A-216ENST00000543995 ADD3Q9UEY8 706 aaKnown RBP16.63■□□□□ 0.25
TNFRSF1A-216ENST00000543995 KIF3AQ9Y496 699 aa16.63■□□□□ 0.25
TNFRSF1A-216ENST00000543995 PTCH2Q9Y6C5 1203 aa16.63■□□□□ 0.25
TNFRSF1A-216ENST00000543995 ESYT2A0FGR8 921 aa16.62■□□□□ 0.25
TNFRSF1A-216ENST00000543995 PIK3CDO00329 1044 aa16.62■□□□□ 0.25
TNFRSF1A-216ENST00000543995 ADCY3O60266 1144 aa16.62■□□□□ 0.25
TNFRSF1A-216ENST00000543995 HOXC6P09630 235 aa16.62■□□□□ 0.25
TNFRSF1A-216ENST00000543995 XRCC5P13010 732 aaKnown RBP16.62■□□□□ 0.25
TNFRSF1A-216ENST00000543995 GJB2P29033 226 aa16.62■□□□□ 0.25
TNFRSF1A-216ENST00000543995 TRIM29Q14134 588 aa16.62■□□□□ 0.25
TNFRSF1A-216ENST00000543995 BECN1Q14457 450 aa16.62■□□□□ 0.25
TNFRSF1A-216ENST00000543995 PKN2Q16513 984 aaKnown RBP16.62■□□□□ 0.25
TNFRSF1A-216ENST00000543995 UBE2SQ16763 222 aa16.62■□□□□ 0.25
TNFRSF1A-216ENST00000543995 FOXD4L1Q9NU39 408 aa16.62■□□□□ 0.25
TNFRSF1A-216ENST00000543995 COL20A1Q9P218 1284 aa16.62■□□□□ 0.25
TNFRSF1A-216ENST00000543995 DIS3Q9Y2L1 958 aaKnown RBP16.62■□□□□ 0.25
TNFRSF1A-216ENST00000543995 SPDYE3A6NKU9 549 aa16.61■□□□□ 0.25
TNFRSF1A-216ENST00000543995 MEIS2O14770 477 aa16.61■□□□□ 0.25
TNFRSF1A-216ENST00000543995 GHRHRQ02643 423 aa16.61■□□□□ 0.25
TNFRSF1A-216ENST00000543995 CCL14Q16627 93 aa16.61■□□□□ 0.25
TNFRSF1A-216ENST00000543995 TRMT44Q8IYL2 757 aaKnown RBP16.61■□□□□ 0.25
TNFRSF1A-216ENST00000543995 BICD2Q8TD16 824 aa16.61■□□□□ 0.25
TNFRSF1A-216ENST00000543995 C8orf76Q96K31 380 aa16.61■□□□□ 0.25
TNFRSF1A-216ENST00000543995 TAAR1Q96RJ0 339 aa16.61■□□□□ 0.25
TNFRSF1A-216ENST00000543995 MPHOSPH6Q99547 160 aaKnown RBP16.61■□□□□ 0.25
TNFRSF1A-216ENST00000543995 GJB4Q9NTQ9 266 aa16.61■□□□□ 0.25
TNFRSF1A-216ENST00000543995 KCNJ14Q9UNX9 436 aa16.61■□□□□ 0.25
TNFRSF1A-216ENST00000543995 SOWAHBA6NEL2 793 aa16.6■□□□□ 0.25
TNFRSF1A-216ENST00000543995 ELNP15502 786 aa16.6■□□□□ 0.25
TNFRSF1A-216ENST00000543995 ARHGEF16Q5VV41 709 aa16.6■□□□□ 0.25
TNFRSF1A-216ENST00000543995 FBXO46Q6PJ61 603 aaPredicted RBP16.6■□□□□ 0.25
TNFRSF1A-216ENST00000543995 FAM177A1Q8N128 213 aaPredicted RBP16.6■□□□□ 0.25
TNFRSF1A-216ENST00000543995 DNERQ8NFT8 737 aa16.6■□□□□ 0.25
TNFRSF1A-216ENST00000543995 PXYLP1Q8TE99 480 aa16.6■□□□□ 0.25
TNFRSF1A-216ENST00000543995 SHISA4Q96DD7 197 aa16.6■□□□□ 0.25
TNFRSF1A-216ENST00000543995 INTS4Q96HW7 963 aaKnown RBP16.6■□□□□ 0.25
TNFRSF1A-216ENST00000543995 RMDN3Q96TC7 470 aa16.6■□□□□ 0.25
TNFRSF1A-216ENST00000543995 BIN2Q9UBW5 565 aaPredicted RBP16.6■□□□□ 0.25
TNFRSF1A-216ENST00000543995 GRK4P32298 578 aa16.6■□□□□ 0.25
TNFRSF1A-216ENST00000543995 ALDH5A1P51649 535 aaPredicted RBP16.6■□□□□ 0.25
TNFRSF1A-216ENST00000543995 GUCY1B3Q02153 619 aa16.6■□□□□ 0.25
TNFRSF1A-216ENST00000543995 OLFML2BQ68BL8 750 aa16.6■□□□□ 0.25
TNFRSF1A-216ENST00000543995 GALNT17Q6IS24 598 aa16.6■□□□□ 0.25
TNFRSF1A-216ENST00000543995 ZNF467Q7Z7K2 595 aaPredicted RBP16.6■□□□□ 0.25
TNFRSF1A-216ENST00000543995 TEX2Q8IWB9 1127 aa16.6■□□□□ 0.25
TNFRSF1A-216ENST00000543995 REXO1Q8N1G1 1221 aaKnown RBP16.6■□□□□ 0.25
TNFRSF1A-216ENST00000543995 SLAIN1Q8ND83 568 aa16.6■□□□□ 0.25
TNFRSF1A-216ENST00000543995 NSUN6Q8TEA1 469 aaKnown RBP16.6■□□□□ 0.25
TNFRSF1A-216ENST00000543995 TRIB2Q92519 343 aa16.6■□□□□ 0.25
TNFRSF1A-216ENST00000543995 PHF20Q9BVI0 1012 aa16.6■□□□□ 0.25
TNFRSF1A-216ENST00000543995 FLRT1Q9NZU1 646 aa16.6■□□□□ 0.25
TNFRSF1A-216ENST00000543995 PCDHA4Q9UN74 947 aa16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms