RNA–Protein interactions for RNA: ENST00000542790.1

VPS33A-207, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 1,133 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-207ENST00000542790 A1CFQ9NQ94 594 aaKnown RBP14.39□□□□□ -0.11
VPS33A-207ENST00000542790 RBM28Q9NW13 759 aaKnown RBP14.39□□□□□ -0.11
VPS33A-207ENST00000542790 PNMA6FA0A0J9YX94 578 aa14.38□□□□□ -0.11
VPS33A-207ENST00000542790 CYTH3O43739 400 aa14.38□□□□□ -0.11
VPS33A-207ENST00000542790 ST18O60284 1047 aa14.38□□□□□ -0.11
VPS33A-207ENST00000542790 IGHA2P01877 340 aa14.38□□□□□ -0.11
VPS33A-207ENST00000542790 CYP2C19P33261 490 aa14.38□□□□□ -0.11
VPS33A-207ENST00000542790 CACNB2Q08289 660 aaPredicted RBP14.38□□□□□ -0.11
VPS33A-207ENST00000542790 APOBRQ0VD83 1088 aa14.38□□□□□ -0.11
VPS33A-207ENST00000542790 TRIM32Q13049 653 aa14.38□□□□□ -0.11
VPS33A-207ENST00000542790 NSMFQ6X4W1 530 aa14.38□□□□□ -0.11
VPS33A-207ENST00000542790 HOMER1Q86YM7 354 aa14.38□□□□□ -0.11
VPS33A-207ENST00000542790 MCF2L2Q86YR7 1114 aa14.38□□□□□ -0.11
VPS33A-207ENST00000542790 RAB11FIP4Q86YS3 637 aa14.38□□□□□ -0.11
VPS33A-207ENST00000542790 RGS22Q8NE09 1264 aa14.38□□□□□ -0.11
VPS33A-207ENST00000542790 CLEC4DQ8WXI8 215 aa14.38□□□□□ -0.11
VPS33A-207ENST00000542790 RRP36Q96EU6 259 aaKnown RBP14.38□□□□□ -0.11
VPS33A-207ENST00000542790 IL17RAQ96F46 866 aa14.38□□□□□ -0.11
VPS33A-207ENST00000542790 PIGSQ96S52 555 aa14.38□□□□□ -0.11
VPS33A-207ENST00000542790 TINF2Q9BSI4 451 aa14.38□□□□□ -0.11
VPS33A-207ENST00000542790 UPF3BQ9BZI7 483 aaKnown RBP14.38□□□□□ -0.11
VPS33A-207ENST00000542790 PDRG1Q9NUG6 133 aa14.38□□□□□ -0.11
VPS33A-207ENST00000542790 CYP39A1Q9NYL5 469 aa14.38□□□□□ -0.11
VPS33A-207ENST00000542790 NAP1L2Q9ULW6 460 aaPredicted RBP14.38□□□□□ -0.11
VPS33A-207ENST00000542790 MRPL11Q9Y3B7 192 aaKnown RBP14.38□□□□□ -0.11
VPS33A-207ENST00000542790 PCDHA1Q9Y5I3 950 aa14.38□□□□□ -0.11
VPS33A-207ENST00000542790 CCDC196A0A1B0GTZ2 297 aa14.37□□□□□ -0.11
VPS33A-207ENST00000542790 NFIBO00712 420 aa14.37□□□□□ -0.11
VPS33A-207ENST00000542790 GTPBP6O43824 516 aaPredicted RBP14.37□□□□□ -0.11
VPS33A-207ENST00000542790 GJB1P08034 283 aa14.37□□□□□ -0.11
VPS33A-207ENST00000542790 TAL1P17542 331 aaPredicted RBP14.37□□□□□ -0.11
VPS33A-207ENST00000542790 SOX10P56693 466 aa14.37□□□□□ -0.11
VPS33A-207ENST00000542790 BAATQ14032 418 aaPredicted RBP14.37□□□□□ -0.11
VPS33A-207ENST00000542790 RTN1Q16799 776 aa14.37□□□□□ -0.11
VPS33A-207ENST00000542790 SLC35G1Q2M3R5 365 aa14.37□□□□□ -0.11
VPS33A-207ENST00000542790 MAMDC4Q6UXC1 1216 aa14.37□□□□□ -0.11
VPS33A-207ENST00000542790 RNF207Q6ZRF8 634 aa14.37□□□□□ -0.11
VPS33A-207ENST00000542790 TMTC3Q6ZXV5 915 aa14.37□□□□□ -0.11
VPS33A-207ENST00000542790 SRBD1Q8N5C6 995 aaKnown RBP14.37□□□□□ -0.11
VPS33A-207ENST00000542790 FAM133AQ8N9E0 248 aa14.37□□□□□ -0.11
VPS33A-207ENST00000542790 XRN2Q9H0D6 950 aaKnown RBP eCLIP14.37□□□□□ -0.11
VPS33A-207ENST00000542790 PAK6Q9NQU5 681 aaPredicted RBP14.37□□□□□ -0.11
VPS33A-207ENST00000542790 SEC63Q9UGP8 760 aaKnown RBP14.37□□□□□ -0.11
VPS33A-207ENST00000542790 NRBP1Q9UHY1 535 aa14.37□□□□□ -0.11
VPS33A-207ENST00000542790 PTPDC1A2A3K4 754 aa14.36□□□□□ -0.11
VPS33A-207ENST00000542790 GOLGA8AA7E2F4 631 aa14.36□□□□□ -0.11
VPS33A-207ENST00000542790 GOLGA8BA8MQT2 603 aa14.36□□□□□ -0.11
VPS33A-207ENST00000542790 PLEKHA8P1O95397 391 aa14.36□□□□□ -0.11
VPS33A-207ENST00000542790 CAPN2P17655 700 aa14.36□□□□□ -0.11
VPS33A-207ENST00000542790 METAP2P50579 478 aaKnown RBP eCLIP14.36□□□□□ -0.11
VPS33A-207ENST00000542790 EVCP57679 992 aa14.36□□□□□ -0.11
VPS33A-207ENST00000542790 CNTN2Q02246 1040 aa14.36□□□□□ -0.11
VPS33A-207ENST00000542790 CMTR1Q8N1G2 835 aaKnown RBP14.36□□□□□ -0.11
VPS33A-207ENST00000542790 CNPY2Q9Y2B0 182 aa14.36□□□□□ -0.11
VPS33A-207ENST00000542790 SYNGAP1Q96PV0 1343 aa14.36□□□□□ -0.11
VPS33A-207ENST00000542790 ASB14A6NK59 587 aa14.35□□□□□ -0.11
VPS33A-207ENST00000542790 PPP1R11O60927 126 aaPredicted RBP14.35□□□□□ -0.11
VPS33A-207ENST00000542790 SGPL1O95470 568 aa14.35□□□□□ -0.11
VPS33A-207ENST00000542790 CALML3P27482 149 aa14.35□□□□□ -0.11
VPS33A-207ENST00000542790 GJA8P48165 433 aa14.35□□□□□ -0.11
VPS33A-207ENST00000542790 RPS6P62753 249 aaKnown RBP14.35□□□□□ -0.11
VPS33A-207ENST00000542790 TOB2Q14106 344 aaPredicted RBP14.35□□□□□ -0.11
VPS33A-207ENST00000542790 CCDC82Q8N4S0 544 aa14.35□□□□□ -0.11
VPS33A-207ENST00000542790 U2AF1L4Q8WU68 220 aaKnown RBP14.35□□□□□ -0.11
VPS33A-207ENST00000542790 PIBF1Q8WXW3 757 aa14.35□□□□□ -0.11
VPS33A-207ENST00000542790 DEFB118Q96PH6 123 aa14.35□□□□□ -0.11
VPS33A-207ENST00000542790 ALDH8A1Q9H2A2 487 aaPredicted RBP14.35□□□□□ -0.11
VPS33A-207ENST00000542790 UPF2Q9HAU5 1272 aaKnown RBP14.35□□□□□ -0.11
VPS33A-207ENST00000542790 ADD3Q9UEY8 706 aaKnown RBP14.35□□□□□ -0.11
VPS33A-207ENST00000542790 PARP14Q460N5 1801 aa14.34□□□□□ -0.11
VPS33A-207ENST00000542790 LOC102724159A0A0B4J2E5 919 aa14.34□□□□□ -0.11
VPS33A-207ENST00000542790 SOWAHBA6NEL2 793 aa14.34□□□□□ -0.11
VPS33A-207ENST00000542790 CYBAP13498 195 aa14.34□□□□□ -0.11
VPS33A-207ENST00000542790 HOXB3P14651 431 aaPredicted RBP14.34□□□□□ -0.11
VPS33A-207ENST00000542790 CNGA1P29973 690 aa14.34□□□□□ -0.11
VPS33A-207ENST00000542790 PDIA3P30101 505 aaKnown RBP14.34□□□□□ -0.11
VPS33A-207ENST00000542790 CCND3P30281 292 aaPredicted RBP14.34□□□□□ -0.11
VPS33A-207ENST00000542790 PWP2Q15269 919 aaKnown RBP14.34□□□□□ -0.11
VPS33A-207ENST00000542790 ANKRD1Q15327 319 aa14.34□□□□□ -0.11
VPS33A-207ENST00000542790 SAMD3Q8N6K7 520 aa14.34□□□□□ -0.11
VPS33A-207ENST00000542790 ZNF274Q96GC6 653 aaPredicted RBP14.34□□□□□ -0.11
VPS33A-207ENST00000542790 MPHOSPH6Q99547 160 aaKnown RBP14.34□□□□□ -0.11
VPS33A-207ENST00000542790 FAM217BQ9NTX9 383 aaPredicted RBP14.34□□□□□ -0.11
VPS33A-207ENST00000542790 MAP3K20Q9NYL2 800 aaKnown RBP14.34□□□□□ -0.11
VPS33A-207ENST00000542790 MGAMO43451 1857 aa14.33□□□□□ -0.11
VPS33A-207ENST00000542790 POTEMA6NI47 508 aa14.33□□□□□ -0.12
VPS33A-207ENST00000542790 B4DLN1 442 aa14.33□□□□□ -0.12
VPS33A-207ENST00000542790 SNPHO15079 494 aa14.33□□□□□ -0.12
VPS33A-207ENST00000542790 MSCO60682 206 aa14.33□□□□□ -0.12
VPS33A-207ENST00000542790 SNAI1O95863 264 aaPredicted RBP14.33□□□□□ -0.12
VPS33A-207ENST00000542790 TFRCP02786 760 aaKnown RBP14.33□□□□□ -0.12
VPS33A-207ENST00000542790 EN2P19622 333 aaPredicted RBP14.33□□□□□ -0.12
VPS33A-207ENST00000542790 CDC27P30260 824 aa14.33□□□□□ -0.12
VPS33A-207ENST00000542790 ADD1P35611 737 aaKnown RBP14.33□□□□□ -0.12
VPS33A-207ENST00000542790 MRPL12P52815 198 aaKnown RBP14.33□□□□□ -0.12
VPS33A-207ENST00000542790 PRAMEF19Q5SWL8 479 aa14.33□□□□□ -0.12
VPS33A-207ENST00000542790 SLC30A10Q6XR72 485 aa14.33□□□□□ -0.12
VPS33A-207ENST00000542790 TRPV1Q8NER1 839 aa14.33□□□□□ -0.12
VPS33A-207ENST00000542790 DNERQ8NFT8 737 aa14.33□□□□□ -0.12
VPS33A-207ENST00000542790 FGD4Q96M96 766 aa14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms