RNA–Protein interactions for RNA: ENST00000540022.5

TNFRSF1A-213, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1A, Length 1,527 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-213ENST00000540022 MRPL12P52815 198 aaKnown RBP21.7■■□□□ 1.06
TNFRSF1A-213ENST00000540022 ERVK-9P63128 1117 aa21.7■■□□□ 1.06
TNFRSF1A-213ENST00000540022 ERVK-24P63145 666 aa21.7■■□□□ 1.06
TNFRSF1A-213ENST00000540022 TKFCQ3LXA3 575 aa21.7■■□□□ 1.06
TNFRSF1A-213ENST00000540022 RASGRP4Q8TDF6 673 aa21.7■■□□□ 1.06
TNFRSF1A-213ENST00000540022 TNFRSF25Q93038 417 aa21.7■■□□□ 1.06
TNFRSF1A-213ENST00000540022 BRMS1Q9HCU9 246 aa21.7■■□□□ 1.06
TNFRSF1A-213ENST00000540022 MORF4L1Q9UBU8 362 aa21.7■■□□□ 1.06
TNFRSF1A-213ENST00000540022 ZSWIM8A7E2V4 1837 aa21.69■■□□□ 1.06
TNFRSF1A-213ENST00000540022 MEIS2O14770 477 aa21.69■■□□□ 1.06
TNFRSF1A-213ENST00000540022 ECM2O94769 699 aaPredicted RBP21.69■■□□□ 1.06
TNFRSF1A-213ENST00000540022 BCRP11274 1271 aa21.69■■□□□ 1.06
TNFRSF1A-213ENST00000540022 U2AF2P26368 475 aaKnown RBP eCLIP21.69■■□□□ 1.06
TNFRSF1A-213ENST00000540022 UBE2SQ16763 222 aa21.69■■□□□ 1.06
TNFRSF1A-213ENST00000540022 USP17L6PQ6QN14 398 aa21.69■■□□□ 1.06
TNFRSF1A-213ENST00000540022 FOXP1Q9H334 677 aaPredicted RBP21.69■■□□□ 1.06
TNFRSF1A-213ENST00000540022 BIN2Q9UBW5 565 aaPredicted RBP21.69■■□□□ 1.06
TNFRSF1A-213ENST00000540022 CFBP00751 764 aa21.68■■□□□ 1.06
TNFRSF1A-213ENST00000540022 CLK2P49760 499 aaKnown RBP21.68■■□□□ 1.06
TNFRSF1A-213ENST00000540022 CAP1Q01518 475 aa21.68■■□□□ 1.06
TNFRSF1A-213ENST00000540022 PKN2Q16513 984 aaKnown RBP21.68■■□□□ 1.06
TNFRSF1A-213ENST00000540022 GPRC5AQ8NFJ5 357 aa21.68■■□□□ 1.06
TNFRSF1A-213ENST00000540022 BICD2Q8TD16 824 aa21.68■■□□□ 1.06
TNFRSF1A-213ENST00000540022 GLT8D2Q9H1C3 349 aa21.68■■□□□ 1.06
TNFRSF1A-213ENST00000540022 TMEM260Q9NX78 707 aa21.68■■□□□ 1.06
TNFRSF1A-213ENST00000540022 PCDHA6Q9UN73 950 aa21.68■■□□□ 1.06
TNFRSF1A-213ENST00000540022 PCDHA8Q9Y5H6 950 aa21.68■■□□□ 1.06
TNFRSF1A-213ENST00000540022 ERCC3P19447 782 aa21.67■■□□□ 1.06
TNFRSF1A-213ENST00000540022 SP3Q02447 781 aa21.67■■□□□ 1.06
TNFRSF1A-213ENST00000540022 GNL2Q13823 731 aaKnown RBP21.67■■□□□ 1.06
TNFRSF1A-213ENST00000540022 FAM110CQ1W6H9 321 aa21.67■■□□□ 1.06
TNFRSF1A-213ENST00000540022 EARS2Q5JPH6 523 aaKnown RBP21.67■■□□□ 1.06
TNFRSF1A-213ENST00000540022 NCAPG2Q86XI2 1143 aa21.67■■□□□ 1.06
TNFRSF1A-213ENST00000540022 REXO1Q8N1G1 1221 aaKnown RBP21.67■■□□□ 1.06
TNFRSF1A-213ENST00000540022 CHST13Q8NET6 341 aa21.67■■□□□ 1.06
TNFRSF1A-213ENST00000540022 COL11A1P12107 1806 aaPredicted RBP21.66■■□□□ 1.06
TNFRSF1A-213ENST00000540022 SLC25A27O95847 323 aa21.66■■□□□ 1.06
TNFRSF1A-213ENST00000540022 HOXA13P31271 388 aaPredicted RBP21.66■■□□□ 1.06
TNFRSF1A-213ENST00000540022 JAKMIP3Q5VZ66 844 aa21.66■■□□□ 1.06
TNFRSF1A-213ENST00000540022 FAM173BQ6P4H8 233 aa21.66■■□□□ 1.06
TNFRSF1A-213ENST00000540022 MCF2L2Q86YR7 1114 aa21.66■■□□□ 1.06
TNFRSF1A-213ENST00000540022 NOSTRINQ8IVI9 506 aa21.66■■□□□ 1.06
TNFRSF1A-213ENST00000540022 CD99L2Q8TCZ2 262 aa21.66■■□□□ 1.06
TNFRSF1A-213ENST00000540022 PORCNQ9H237 461 aa21.66■■□□□ 1.06
TNFRSF1A-213ENST00000540022 ZSCAN16Q9H4T2 348 aaPredicted RBP21.66■■□□□ 1.06
TNFRSF1A-213ENST00000540022 ACAD9Q9H845 621 aa21.66■■□□□ 1.06
TNFRSF1A-213ENST00000540022 FAM205CA6NFA0 338 aa21.65■■□□□ 1.06
TNFRSF1A-213ENST00000540022 GCOM1H8Y6P7 765 aaPredicted RBP21.65■■□□□ 1.06
TNFRSF1A-213ENST00000540022 PIK3CDO00329 1044 aa21.65■■□□□ 1.06
TNFRSF1A-213ENST00000540022 POLR2MP0CAP2 368 aa21.65■■□□□ 1.06
TNFRSF1A-213ENST00000540022 HSD17B4P51659 736 aa21.65■■□□□ 1.06
TNFRSF1A-213ENST00000540022 GHRHRQ02643 423 aa21.65■■□□□ 1.06
TNFRSF1A-213ENST00000540022 OTOP1Q7RTM1 612 aa21.65■■□□□ 1.06
TNFRSF1A-213ENST00000540022 ERO1AQ96HE7 468 aa21.65■■□□□ 1.06
TNFRSF1A-213ENST00000540022 TRIM17Q9Y577 477 aa21.65■■□□□ 1.06
TNFRSF1A-213ENST00000540022 CTGFP29279 349 aa21.65■■□□□ 1.06
TNFRSF1A-213ENST00000540022 COPB2P35606 906 aa21.65■■□□□ 1.06
TNFRSF1A-213ENST00000540022 CCNA1P78396 465 aa21.65■■□□□ 1.06
TNFRSF1A-213ENST00000540022 FBXO46Q6PJ61 603 aaPredicted RBP21.65■■□□□ 1.06
TNFRSF1A-213ENST00000540022 NSMFQ6X4W1 530 aa21.65■■□□□ 1.06
TNFRSF1A-213ENST00000540022 BRAPQ7Z569 592 aa21.65■■□□□ 1.06
TNFRSF1A-213ENST00000540022 SHCBP1Q8NEM2 672 aa21.65■■□□□ 1.06
TNFRSF1A-213ENST00000540022 PGBD1Q96JS3 809 aa21.65■■□□□ 1.06
TNFRSF1A-213ENST00000540022 EFCC1Q9HA90 598 aa21.65■■□□□ 1.06
TNFRSF1A-213ENST00000540022 FBXO40Q9UH90 709 aa21.65■■□□□ 1.06
TNFRSF1A-213ENST00000540022 RPS6P62753 249 aaKnown RBP21.64■■□□□ 1.05
TNFRSF1A-213ENST00000540022 FOXD4L6Q3SYB3 417 aaPredicted RBP21.64■■□□□ 1.05
TNFRSF1A-213ENST00000540022 FOXD4L3Q6VB84 417 aaPredicted RBP21.64■■□□□ 1.05
TNFRSF1A-213ENST00000540022 SLC30A10Q6XR72 485 aa21.64■■□□□ 1.05
TNFRSF1A-213ENST00000540022 PIK3AP1Q6ZUJ8 805 aa21.64■■□□□ 1.05
TNFRSF1A-213ENST00000540022 TEX2Q8IWB9 1127 aa21.64■■□□□ 1.05
TNFRSF1A-213ENST00000540022 ARHGAP39Q9C0H5 1083 aa21.64■■□□□ 1.05
TNFRSF1A-213ENST00000540022 A1CFQ9NQ94 594 aaKnown RBP21.64■■□□□ 1.05
TNFRSF1A-213ENST00000540022 MGAMO43451 1857 aa21.63■■□□□ 1.05
TNFRSF1A-213ENST00000540022 BAATQ14032 418 aaPredicted RBP21.63■■□□□ 1.05
TNFRSF1A-213ENST00000540022 RNF207Q6ZRF8 634 aa21.63■■□□□ 1.05
TNFRSF1A-213ENST00000540022 KRT25Q7Z3Z0 450 aa21.63■■□□□ 1.05
TNFRSF1A-213ENST00000540022 FCHSD1Q86WN1 690 aa21.63■■□□□ 1.05
TNFRSF1A-213ENST00000540022 SAMD3Q8N6K7 520 aa21.63■■□□□ 1.05
TNFRSF1A-213ENST00000540022 TNPO1Q92973 898 aaKnown RBP21.63■■□□□ 1.05
TNFRSF1A-213ENST00000540022 CHAMP1Q96JM3 812 aa21.63■■□□□ 1.05
TNFRSF1A-213ENST00000540022 MROH8Q9H579 483 aa21.63■■□□□ 1.05
TNFRSF1A-213ENST00000540022 MAP3K20Q9NYL2 800 aaKnown RBP21.63■■□□□ 1.05
TNFRSF1A-213ENST00000540022 COL20A1Q9P218 1284 aa21.63■■□□□ 1.05
TNFRSF1A-213ENST00000540022 SMCHD1A6NHR9 2005 aa21.63■■□□□ 1.05
TNFRSF1A-213ENST00000540022 CCDC194A0A1B0GVG4 234 aa21.62■■□□□ 1.05
TNFRSF1A-213ENST00000540022 AP3B2Q13367 1082 aa21.62■■□□□ 1.05
TNFRSF1A-213ENST00000540022 MYSM1Q5VVJ2 828 aa21.62■■□□□ 1.05
TNFRSF1A-213ENST00000540022 DHX30Q7L2E3 1194 aaKnown RBP eCLIP21.62■■□□□ 1.05
TNFRSF1A-213ENST00000540022 SYTL5Q8TDW5 730 aaPredicted RBP21.62■■□□□ 1.05
TNFRSF1A-213ENST00000540022 CYP39A1Q9NYL5 469 aa21.62■■□□□ 1.05
TNFRSF1A-213ENST00000540022 WDR78Q5VTH9 848 aa21.61■■□□□ 1.05
TNFRSF1A-213ENST00000540022 ANKRD35Q8N283 1001 aa21.61■■□□□ 1.05
TNFRSF1A-213ENST00000540022 ANO3Q9BYT9 981 aa21.61■■□□□ 1.05
TNFRSF1A-213ENST00000540022 DOCK3Q8IZD9 2030 aa21.61■■□□□ 1.05
TNFRSF1A-213ENST00000540022 SPDYE3A6NKU9 549 aa21.6■■□□□ 1.05
TNFRSF1A-213ENST00000540022 FOSP01100 380 aaPredicted RBP21.6■■□□□ 1.05
TNFRSF1A-213ENST00000540022 NONOQ15233 471 aaKnown RBP eCLIP21.6■■□□□ 1.05
TNFRSF1A-213ENST00000540022 INF2Q27J81 1249 aa21.6■■□□□ 1.05
TNFRSF1A-213ENST00000540022 MCTP2Q6DN12 878 aa21.6■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 86 ms