RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 SH2B2O14492 632 aaPredicted RBP17.21■□□□□ 0.35
USP28-204ENST00000537642 CYTH3O43739 400 aa17.21■□□□□ 0.35
USP28-204ENST00000537642 PPP1R11O60927 126 aaPredicted RBP17.21■□□□□ 0.35
USP28-204ENST00000537642 C6orf222P0C671 652 aaPredicted RBP17.21■□□□□ 0.35
USP28-204ENST00000537642 CST5P28325 142 aaPredicted RBP17.21■□□□□ 0.35
USP28-204ENST00000537642 KCNA10Q16322 511 aa17.21■□□□□ 0.35
USP28-204ENST00000537642 ZNF654Q8IZM8 581 aa17.21■□□□□ 0.35
USP28-204ENST00000537642 DNERQ8NFT8 737 aa17.21■□□□□ 0.35
USP28-204ENST00000537642 TMEM87BQ96K49 555 aa17.21■□□□□ 0.35
USP28-204ENST00000537642 AMNQ9BXJ7 453 aa17.21■□□□□ 0.35
USP28-204ENST00000537642 MAF1Q9H063 256 aa17.21■□□□□ 0.35
USP28-204ENST00000537642 VTA1Q9NP79 307 aa17.21■□□□□ 0.35
USP28-204ENST00000537642 GNEQ9Y223 722 aaKnown RBP17.21■□□□□ 0.35
USP28-204ENST00000537642 ATP11BQ9Y2G3 1177 aa17.21■□□□□ 0.35
USP28-204ENST00000537642 MRPL11Q9Y3B7 192 aaKnown RBP17.21■□□□□ 0.35
USP28-204ENST00000537642 ZBTB5O15062 677 aa17.2■□□□□ 0.34
USP28-204ENST00000537642 CTAGE5O15320 804 aa17.2■□□□□ 0.34
USP28-204ENST00000537642 SMPD1P17405 629 aa17.2■□□□□ 0.34
USP28-204ENST00000537642 PTGS1P23219 599 aa17.2■□□□□ 0.34
USP28-204ENST00000537642 EDNRBP24530 442 aa17.2■□□□□ 0.34
USP28-204ENST00000537642 ACLYP53396 1101 aa17.2■□□□□ 0.34
USP28-204ENST00000537642 NKX3-2P78367 333 aa17.2■□□□□ 0.34
USP28-204ENST00000537642 TRIM60Q495X7 471 aa17.2■□□□□ 0.34
USP28-204ENST00000537642 TMEM63BQ5T3F8 832 aa17.2■□□□□ 0.34
USP28-204ENST00000537642 RNF20Q5VTR2 975 aa17.2■□□□□ 0.34
USP28-204ENST00000537642 C1orf53Q5VUE5 145 aa17.2■□□□□ 0.34
USP28-204ENST00000537642 IQSEC1Q6DN90 963 aa17.2■□□□□ 0.34
USP28-204ENST00000537642 RASEFQ8IZ41 740 aa17.2■□□□□ 0.34
USP28-204ENST00000537642 SYTL5Q8TDW5 730 aaPredicted RBP17.2■□□□□ 0.34
USP28-204ENST00000537642 NUP133Q8WUM0 1156 aa17.2■□□□□ 0.34
USP28-204ENST00000537642 MAP3K14Q99558 947 aa17.2■□□□□ 0.34
USP28-204ENST00000537642 GDF15Q99988 308 aa17.2■□□□□ 0.34
USP28-204ENST00000537642 MYL10Q9BUA6 226 aa17.2■□□□□ 0.34
USP28-204ENST00000537642 LRRC2Q9BYS8 371 aa17.2■□□□□ 0.34
USP28-204ENST00000537642 SPC25Q9HBM1 224 aa17.2■□□□□ 0.34
USP28-204ENST00000537642 COL20A1Q9P218 1284 aa17.2■□□□□ 0.34
USP28-204ENST00000537642 MOXD2PA6NHM9 499 aa17.19■□□□□ 0.34
USP28-204ENST00000537642 OPLAHO14841 1288 aa17.19■□□□□ 0.34
USP28-204ENST00000537642 DDAH1O94760 285 aa17.19■□□□□ 0.34
USP28-204ENST00000537642 MAGEA10P43363 369 aaPredicted RBP17.19■□□□□ 0.34
USP28-204ENST00000537642 NOL8Q76FK4 1167 aaKnown RBP17.19■□□□□ 0.34
USP28-204ENST00000537642 HOMER1Q86YM7 354 aa17.19■□□□□ 0.34
USP28-204ENST00000537642 MCF2L2Q86YR7 1114 aa17.19■□□□□ 0.34
USP28-204ENST00000537642 PIGSQ96S52 555 aa17.19■□□□□ 0.34
USP28-204ENST00000537642 PPP4R2Q9NY27 417 aa17.19■□□□□ 0.34
USP28-204ENST00000537642 RBM47A0AV96 593 aaKnown RBP17.18■□□□□ 0.34
USP28-204ENST00000537642 LIFRP42702 1097 aa17.18■□□□□ 0.34
USP28-204ENST00000537642 BEX3Q00994 111 aa17.18■□□□□ 0.34
USP28-204ENST00000537642 PDE4DQ08499 809 aa17.18■□□□□ 0.34
USP28-204ENST00000537642 TSGA10IPQ3SY00 556 aa17.18■□□□□ 0.34
USP28-204ENST00000537642 GNASQ5JWF2 1037 aa17.18■□□□□ 0.34
USP28-204ENST00000537642 NFXL1Q6ZNB6 911 aa17.18■□□□□ 0.34
USP28-204ENST00000537642 TLK2Q86UE8 772 aa17.18■□□□□ 0.34
USP28-204ENST00000537642 TMTC2Q8N394 836 aa17.18■□□□□ 0.34
USP28-204ENST00000537642 PCSK9Q8NBP7 692 aaKnown RBP17.18■□□□□ 0.34
USP28-204ENST00000537642 TAAR1Q96RJ0 339 aa17.18■□□□□ 0.34
USP28-204ENST00000537642 PCDHA1Q9Y5I3 950 aa17.18■□□□□ 0.34
USP28-204ENST00000537642 PNMA6FA0A0J9YX94 578 aa17.17■□□□□ 0.34
USP28-204ENST00000537642 CCDC69A6NI79 296 aa17.17■□□□□ 0.34
USP28-204ENST00000537642 DYNC1LI2O43237 492 aaPredicted RBP17.17■□□□□ 0.34
USP28-204ENST00000537642 ASGR1P07306 291 aa17.17■□□□□ 0.34
USP28-204ENST00000537642 BMP8BP34820 402 aa17.17■□□□□ 0.34
USP28-204ENST00000537642 FXR1P51114 621 aaKnown RBP eCLIP17.17■□□□□ 0.34
USP28-204ENST00000537642 GHRHRQ02643 423 aa17.17■□□□□ 0.34
USP28-204ENST00000537642 ADCK5Q3MIX3 580 aa17.17■□□□□ 0.34
USP28-204ENST00000537642 ERICH6BQ5W0A0 696 aa17.17■□□□□ 0.34
USP28-204ENST00000537642 CTCFLQ8NI51 663 aaPredicted RBP17.17■□□□□ 0.34
USP28-204ENST00000537642 NEK1Q96PY6 1258 aa17.17■□□□□ 0.34
USP28-204ENST00000537642 MPHOSPH6Q99547 160 aaKnown RBP17.17■□□□□ 0.34
USP28-204ENST00000537642 STARD7Q9NQZ5 370 aa17.17■□□□□ 0.34
USP28-204ENST00000537642 Q9Y3F1 56 aa17.17■□□□□ 0.34
USP28-204ENST00000537642 LTBP2Q14767 1821 aa17.17■□□□□ 0.34
USP28-204ENST00000537642 SLC34A2O95436 690 aa17.16■□□□□ 0.34
USP28-204ENST00000537642 CFBP00751 764 aa17.16■□□□□ 0.34
USP28-204ENST00000537642 RXRAP19793 462 aa17.16■□□□□ 0.34
USP28-204ENST00000537642 KIF5BP33176 963 aa17.16■□□□□ 0.34
USP28-204ENST00000537642 HSD17B4P51659 736 aa17.16■□□□□ 0.34
USP28-204ENST00000537642 EXOSC10Q01780 885 aaKnown RBP17.16■□□□□ 0.34
USP28-204ENST00000537642 TLE2Q04725 743 aa17.16■□□□□ 0.34
USP28-204ENST00000537642 DUSP28Q4G0W2 176 aa17.16■□□□□ 0.34
USP28-204ENST00000537642 PIBF1Q8WXW3 757 aa17.16■□□□□ 0.34
USP28-204ENST00000537642 SPZ1Q9BXG8 430 aa17.16■□□□□ 0.34
USP28-204ENST00000537642 WDR11Q9BZH6 1224 aa17.16■□□□□ 0.34
USP28-204ENST00000537642 AP5M1Q9H0R1 490 aa17.16■□□□□ 0.34
USP28-204ENST00000537642 PDLIM7Q9NR12 457 aa17.16■□□□□ 0.34
USP28-204ENST00000537642 KIAA1217Q5T5P2 1943 aa17.15■□□□□ 0.34
USP28-204ENST00000537642 A0A1W2PPC1 479 aa17.15■□□□□ 0.34
USP28-204ENST00000537642 B4DLN1 442 aa17.15■□□□□ 0.34
USP28-204ENST00000537642 PLEKHA8P1O95397 391 aa17.15■□□□□ 0.34
USP28-204ENST00000537642 CENPBP07199 599 aaPredicted RBP17.15■□□□□ 0.34
USP28-204ENST00000537642 MRPL12P52815 198 aaKnown RBP17.15■□□□□ 0.34
USP28-204ENST00000537642 MDM2Q00987 491 aaPredicted RBP17.15■□□□□ 0.34
USP28-204ENST00000537642 FSCN1Q16658 493 aaKnown RBP17.15■□□□□ 0.34
USP28-204ENST00000537642 SH3RF1Q7Z6J0 888 aa17.15■□□□□ 0.34
USP28-204ENST00000537642 SGMS1Q86VZ5 419 aa17.15■□□□□ 0.34
USP28-204ENST00000537642 RAB11FIP4Q86YS3 637 aa17.15■□□□□ 0.34
USP28-204ENST00000537642 NSUN6Q8TEA1 469 aaKnown RBP17.15■□□□□ 0.34
USP28-204ENST00000537642 KCNB2Q92953 911 aa17.15■□□□□ 0.34
USP28-204ENST00000537642 TCEANC2Q96MN5 208 aa17.15■□□□□ 0.34
USP28-204ENST00000537642 GLT1D1Q96MS3 346 aa17.15■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms