RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-215ENST00000534705 A0A1W2PQH9 124 aa5.6□□□□□ -1.51
USP48-215ENST00000534705 SH3D21A4FU49 640 aa5.6□□□□□ -1.51
USP48-215ENST00000534705 C9IYK1 514 aa5.6□□□□□ -1.51
USP48-215ENST00000534705 PRAMEF1O95521 474 aa5.6□□□□□ -1.51
USP48-215ENST00000534705 HMGA2P52926 109 aa5.6□□□□□ -1.51
USP48-215ENST00000534705 FOXO4P98177 505 aa5.6□□□□□ -1.51
USP48-215ENST00000534705 SNW1Q13573 536 aaKnown RBP5.6□□□□□ -1.51
USP48-215ENST00000534705 KIR3DS1Q14943 382 aa5.6□□□□□ -1.51
USP48-215ENST00000534705 PLEKHN1Q494U1 663 aaPredicted RBP5.6□□□□□ -1.51
USP48-215ENST00000534705 TNNI3KQ59H18 835 aa5.6□□□□□ -1.51
USP48-215ENST00000534705 SAPCD2Q86UD0 394 aa5.6□□□□□ -1.51
USP48-215ENST00000534705 TTC9BQ8N6N2 239 aa5.6□□□□□ -1.51
USP48-215ENST00000534705 FNIP1Q8TF40 1166 aa5.6□□□□□ -1.51
USP48-215ENST00000534705 GMLQ99445 158 aa5.6□□□□□ -1.51
USP48-215ENST00000534705 SPATA25Q9BR10 227 aa5.6□□□□□ -1.51
USP48-215ENST00000534705 CHST7Q9NS84 486 aa5.6□□□□□ -1.51
USP48-215ENST00000534705 PMF1-BGLAPU3KQ54 211 aa5.6□□□□□ -1.51
USP48-215ENST00000534705 LTBP3Q9NS15 1303 aa5.59□□□□□ -1.51
USP48-215ENST00000534705 A0A1W2PQ27 194 aa5.59□□□□□ -1.51
USP48-215ENST00000534705 A0A1W2PQ64 194 aa5.59□□□□□ -1.51
USP48-215ENST00000534705 A0A1W2PQC6 194 aa5.59□□□□□ -1.51
USP48-215ENST00000534705 A0A1W2PQD8 194 aa5.59□□□□□ -1.51
USP48-215ENST00000534705 ZC3H6P61129 1189 aaKnown RBP5.59□□□□□ -1.51
USP48-215ENST00000534705 ZNF200P98182 395 aaPredicted RBP5.59□□□□□ -1.51
USP48-215ENST00000534705 ARID5AQ03989 594 aa5.59□□□□□ -1.51
USP48-215ENST00000534705 C1QTNF3Q9BXJ4 246 aa5.59□□□□□ -1.51
USP48-215ENST00000534705 FHOD1Q9Y613 1164 aa5.59□□□□□ -1.51
USP48-215ENST00000534705 A0A087WZG4 1122 aa5.58□□□□□ -1.52
USP48-215ENST00000534705 FAM86C2PA6NEL3 165 aa5.58□□□□□ -1.52
USP48-215ENST00000534705 SSBP05455 408 aaKnown RBP eCLIP5.58□□□□□ -1.52
USP48-215ENST00000534705 GSNP06396 782 aa5.58□□□□□ -1.52
USP48-215ENST00000534705 BMP8BP34820 402 aa5.58□□□□□ -1.52
USP48-215ENST00000534705 CNR2P34972 360 aa5.58□□□□□ -1.52
USP48-215ENST00000534705 GDF5P43026 501 aa5.58□□□□□ -1.52
USP48-215ENST00000534705 GJA9P57773 515 aa5.58□□□□□ -1.52
USP48-215ENST00000534705 SLC7A5Q01650 507 aa5.58□□□□□ -1.52
USP48-215ENST00000534705 AXDND1Q5T1B0 1012 aaPredicted RBP5.58□□□□□ -1.52
USP48-215ENST00000534705 TDRD10Q5VZ19 366 aaKnown RBP5.58□□□□□ -1.52
USP48-215ENST00000534705 FAM169BQ8N8A8 192 aa5.58□□□□□ -1.52
USP48-215ENST00000534705 C8orf37Q96NL8 207 aa5.58□□□□□ -1.52
USP48-215ENST00000534705 SAMD11Q96NU1 681 aa5.58□□□□□ -1.52
USP48-215ENST00000534705 ERVK13-1Q9NX77 482 aa5.58□□□□□ -1.52
USP48-215ENST00000534705 GFOD1Q9NXC2 390 aa5.58□□□□□ -1.52
USP48-215ENST00000534705 FBXL21Q9UKT6 434 aa5.58□□□□□ -1.52
USP48-215ENST00000534705 FAN1Q9Y2M0 1017 aa5.58□□□□□ -1.52
USP48-215ENST00000534705 CBFA2T2O43439 604 aa5.57□□□□□ -1.52
USP48-215ENST00000534705 NOBOXO60393 691 aa5.57□□□□□ -1.52
USP48-215ENST00000534705 ZNF205O95201 554 aa5.57□□□□□ -1.52
USP48-215ENST00000534705 ITGA4P13612 1032 aa5.57□□□□□ -1.52
USP48-215ENST00000534705 ZNF143P52747 638 aaPredicted RBP5.57□□□□□ -1.52
USP48-215ENST00000534705 HTRA3P83110 453 aa5.57□□□□□ -1.52
USP48-215ENST00000534705 PAQR3Q6TCH7 311 aa5.57□□□□□ -1.52
USP48-215ENST00000534705 KLHL6Q8WZ60 621 aa5.57□□□□□ -1.52
USP48-215ENST00000534705 DDX1Q92499 740 aaKnown RBP5.57□□□□□ -1.52
USP48-215ENST00000534705 ANAPC16Q96DE5 110 aa5.57□□□□□ -1.52
USP48-215ENST00000534705 RBM15Q96T37 977 aaKnown RBP eCLIP5.57□□□□□ -1.52
USP48-215ENST00000534705 HAUS7Q99871 368 aa5.57□□□□□ -1.52
USP48-215ENST00000534705 BUD13Q9BRD0 619 aaKnown RBP eCLIP5.57□□□□□ -1.524e-7■□□□□ 9
USP48-215ENST00000534705 CDADC1Q9BWV3 514 aa5.57□□□□□ -1.52
USP48-215ENST00000534705 LNPKQ9C0E8 428 aa5.57□□□□□ -1.52
USP48-215ENST00000534705 RNF38Q9H0F5 515 aa5.57□□□□□ -1.52
USP48-215ENST00000534705 GBP3Q9H0R5 595 aa5.57□□□□□ -1.52
USP48-215ENST00000534705 GP6Q9HCN6 339 aa5.57□□□□□ -1.52
USP48-215ENST00000534705 WHRNQ9P202 907 aa5.57□□□□□ -1.52
USP48-215ENST00000534705 IMPACTQ9P2X3 320 aa5.57□□□□□ -1.52
USP48-215ENST00000534705 PRKAG3Q9UGI9 489 aa5.57□□□□□ -1.52
USP48-215ENST00000534705 A0A1B0GTL3 188 aa5.56□□□□□ -1.52
USP48-215ENST00000534705 PLA2G1BP04054 148 aaKnown RBP5.56□□□□□ -1.52
USP48-215ENST00000534705 CYBBP04839 570 aa5.56□□□□□ -1.52
USP48-215ENST00000534705 CD247P20963 164 aa5.56□□□□□ -1.52
USP48-215ENST00000534705 CTSKP43235 329 aa5.56□□□□□ -1.52
USP48-215ENST00000534705 NCAPHQ15003 741 aa5.56□□□□□ -1.52
USP48-215ENST00000534705 TCEAL1Q15170 157 aa5.56□□□□□ -1.52
USP48-215ENST00000534705 GNPTABQ3T906 1256 aa5.56□□□□□ -1.52
USP48-215ENST00000534705 DCAF15Q66K64 600 aa5.56□□□□□ -1.52
USP48-215ENST00000534705 MCF2L2Q86YR7 1114 aa5.56□□□□□ -1.52
USP48-215ENST00000534705 ADGRG2Q8IZP9 1017 aa5.56□□□□□ -1.52
USP48-215ENST00000534705 CARFQ8N187 725 aa5.56□□□□□ -1.52
USP48-215ENST00000534705 DSCC1Q9BVC3 393 aa5.56□□□□□ -1.52
USP48-215ENST00000534705 KLHL25Q9H0H3 589 aa5.56□□□□□ -1.52
USP48-215ENST00000534705 SF3B6Q9Y3B4 125 aaKnown RBP5.56□□□□□ -1.52
USP48-215ENST00000534705 DUSP10Q9Y6W6 482 aa5.56□□□□□ -1.52
USP48-215ENST00000534705 SHROOM4Q9ULL8 1493 aa5.56□□□□□ -1.52
USP48-215ENST00000534705 NAT2P11245 290 aa5.55□□□□□ -1.52
USP48-215ENST00000534705 NCAM1P13591 858 aa5.55□□□□□ -1.52
USP48-215ENST00000534705 ZNF20P17024 532 aa5.55□□□□□ -1.52
USP48-215ENST00000534705 ZNF445P59923 1031 aa5.55□□□□□ -1.52
USP48-215ENST00000534705 PPP2R5EQ16537 467 aa5.55□□□□□ -1.52
USP48-215ENST00000534705 VHLLQ6RSH7 139 aa5.55□□□□□ -1.52
USP48-215ENST00000534705 ZNF526Q8TF50 670 aaPredicted RBP5.55□□□□□ -1.52
USP48-215ENST00000534705 LOXL4Q96JB6 756 aa5.55□□□□□ -1.52
USP48-215ENST00000534705 MENTQ9BUN1 341 aa5.55□□□□□ -1.52
USP48-215ENST00000534705 ACTR10Q9NZ32 417 aa5.55□□□□□ -1.52
USP48-215ENST00000534705 ZNF451Q9Y4E5 1061 aa5.55□□□□□ -1.52
USP48-215ENST00000534705 A0A1W2PQJ5 194 aa5.54□□□□□ -1.52
USP48-215ENST00000534705 CYR61O00622 381 aa5.54□□□□□ -1.52
USP48-215ENST00000534705 SMAD7O15105 426 aaKnown RBP5.54□□□□□ -1.52
USP48-215ENST00000534705 SRGAP3O43295 1099 aa5.54□□□□□ -1.52
USP48-215ENST00000534705 TP53P04637 393 aaPredicted RBP5.54□□□□□ -1.52
USP48-215ENST00000534705 ATF2P15336 505 aa5.54□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms