RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 ALDH1L2Q3SY69 923 aa9.96□□□□□ -0.82
CD44-232ENST00000531118 TNNI3KQ59H18 835 aa9.96□□□□□ -0.82
CD44-232ENST00000531118 CCDC158Q5M9N0 1113 aa9.96□□□□□ -0.82
CD44-232ENST00000531118 FAM83BQ5T0W9 1011 aa9.96□□□□□ -0.82
CD44-232ENST00000531118 SIAH1Q8IUQ4 282 aa9.96□□□□□ -0.82
CD44-232ENST00000531118 PHOSPHO2Q8TCD6 241 aa9.96□□□□□ -0.82
CD44-232ENST00000531118 DDX11Q96FC9 970 aa9.96□□□□□ -0.82
CD44-232ENST00000531118 ZNF512BQ96KM6 892 aaPredicted RBP9.96□□□□□ -0.82
CD44-232ENST00000531118 RIOK1Q9BRS2 568 aaKnown RBP9.96□□□□□ -0.82
CD44-232ENST00000531118 ZBED2Q9BTP6 218 aa9.96□□□□□ -0.82
CD44-232ENST00000531118 ALDH8A1Q9H2A2 487 aaPredicted RBP9.96□□□□□ -0.82
CD44-232ENST00000531118 FPGT-TNNI3KV9GXZ4 949 aa9.96□□□□□ -0.82
CD44-232ENST00000531118 PTPRZ1P23471 2315 aaPredicted RBP9.96□□□□□ -0.82
CD44-232ENST00000531118 MYH7P12883 1935 aa9.95□□□□□ -0.82
CD44-232ENST00000531118 MICAL3Q7RTP6 2002 aa9.95□□□□□ -0.82
CD44-232ENST00000531118 MYO7AQ13402 2215 aa9.95□□□□□ -0.82
CD44-232ENST00000531118 LCHNA4D1U4 455 aa9.95□□□□□ -0.82
CD44-232ENST00000531118 KIF28PB7ZC32 967 aa9.95□□□□□ -0.82
CD44-232ENST00000531118 CYP2D6P10635 497 aa9.95□□□□□ -0.82
CD44-232ENST00000531118 CYP2C9P11712 490 aa9.95□□□□□ -0.82
CD44-232ENST00000531118 PTGS1P23219 599 aa9.95□□□□□ -0.82
CD44-232ENST00000531118 PRSS12P56730 875 aa9.95□□□□□ -0.82
CD44-232ENST00000531118 FOXK2Q01167 660 aa9.95□□□□□ -0.82
CD44-232ENST00000531118 FSCN1Q16658 493 aaKnown RBP9.95□□□□□ -0.82
CD44-232ENST00000531118 DMRTA1Q5VZB9 504 aa9.95□□□□□ -0.82
CD44-232ENST00000531118 GPR108Q9NPR9 543 aa9.95□□□□□ -0.82
CD44-232ENST00000531118 TRMT13Q9NUP7 481 aaKnown RBP9.95□□□□□ -0.82
CD44-232ENST00000531118 MCM9Q9NXL9 1143 aa9.95□□□□□ -0.82
CD44-232ENST00000531118 SWAP70Q9UH65 585 aa9.95□□□□□ -0.82
CD44-232ENST00000531118 GNEQ9Y223 722 aaKnown RBP9.95□□□□□ -0.82
CD44-232ENST00000531118 RIPK3Q9Y572 518 aa9.95□□□□□ -0.82
CD44-232ENST00000531118 TNKSO95271 1327 aa9.95□□□□□ -0.82
CD44-232ENST00000531118 RIF1Q5UIP0 2472 aaKnown RBP9.95□□□□□ -0.82
CD44-232ENST00000531118 PNMA6EA0A0J9YXQ4 647 aa9.94□□□□□ -0.82
CD44-232ENST00000531118 RFC2P35250 354 aa9.94□□□□□ -0.82
CD44-232ENST00000531118 PTPN5P54829 565 aa9.94□□□□□ -0.82
CD44-232ENST00000531118 TNFAIP2Q03169 654 aa9.94□□□□□ -0.82
CD44-232ENST00000531118 ZP2Q05996 745 aa9.94□□□□□ -0.82
CD44-232ENST00000531118 G3BP1Q13283 466 aaKnown RBP eCLIP9.94□□□□□ -0.82
CD44-232ENST00000531118 CCDC144CPQ8IYA2 1237 aa9.94□□□□□ -0.82
CD44-232ENST00000531118 SLF1Q9BQI6 1058 aa9.94□□□□□ -0.82
CD44-232ENST00000531118 KRTAP3-3Q9BYR6 98 aa9.94□□□□□ -0.82
CD44-232ENST00000531118 KRTAP3-2Q9BYR7 98 aa9.94□□□□□ -0.82
CD44-232ENST00000531118 GOPCQ9HD26 462 aa9.94□□□□□ -0.82
CD44-232ENST00000531118 TLR7Q9NYK1 1049 aaKnown RBP9.94□□□□□ -0.82
CD44-232ENST00000531118 DBNLQ9UJU6 430 aaKnown RBP9.94□□□□□ -0.82
CD44-232ENST00000531118 ZFHX2Q9C0A1 2572 aaPredicted RBP9.94□□□□□ -0.82
CD44-232ENST00000531118 RALGAPA2Q2PPJ7 1873 aa9.93□□□□□ -0.82
CD44-232ENST00000531118 TRIM6-TRIM34B2RNG4 842 aa9.93□□□□□ -0.82
CD44-232ENST00000531118 ZEB2O60315 1214 aa9.93□□□□□ -0.82
CD44-232ENST00000531118 BAIAP3O94812 1187 aa9.93□□□□□ -0.82
CD44-232ENST00000531118 GNAI3P08754 354 aa9.93□□□□□ -0.82
CD44-232ENST00000531118 EEF2P13639 858 aaKnown RBP9.93□□□□□ -0.82
CD44-232ENST00000531118 PUS10Q3MIT2 529 aaKnown RBP9.93□□□□□ -0.82
CD44-232ENST00000531118 TMED8Q6PL24 325 aaPredicted RBP9.93□□□□□ -0.82
CD44-232ENST00000531118 NOL8Q76FK4 1167 aaKnown RBP9.93□□□□□ -0.82
CD44-232ENST00000531118 NEK9Q8TD19 979 aa9.93□□□□□ -0.82
CD44-232ENST00000531118 DYNLL2Q96FJ2 89 aa9.93□□□□□ -0.82
CD44-232ENST00000531118 MFSD14AQ96MC6 490 aa9.93□□□□□ -0.82
CD44-232ENST00000531118 CRNKL1Q9BZJ0 848 aaKnown RBP9.93□□□□□ -0.82
CD44-232ENST00000531118 API5Q9BZZ5 524 aaKnown RBP9.93□□□□□ -0.82
CD44-232ENST00000531118 MTUS1Q9ULD2 1270 aa9.93□□□□□ -0.82
CD44-232ENST00000531118 TRIOO75962 3097 aa9.93□□□□□ -0.82
CD44-232ENST00000531118 GVINP1Q7Z2Y8 2422 aa9.92□□□□□ -0.82
CD44-232ENST00000531118 MAGEB6P1A0A0J9YX57 407 aa9.92□□□□□ -0.82
CD44-232ENST00000531118 H3BQ06 376 aaPredicted RBP9.92□□□□□ -0.82
CD44-232ENST00000531118 ATP2A1O14983 1001 aa9.92□□□□□ -0.82
CD44-232ENST00000531118 RAD21O60216 631 aa9.92□□□□□ -0.82
CD44-232ENST00000531118 GFRA3O60609 400 aa9.92□□□□□ -0.82
CD44-232ENST00000531118 SUPT20HL2P0C7V6 817 aa9.92□□□□□ -0.82
CD44-232ENST00000531118 SMPD1P17405 629 aa9.92□□□□□ -0.82
CD44-232ENST00000531118 KCNJ6P48051 423 aa9.92□□□□□ -0.82
CD44-232ENST00000531118 WDR5P61964 334 aaKnown RBP9.92□□□□□ -0.82
CD44-232ENST00000531118 TMCO2Q7Z6W1 182 aaPredicted RBP9.92□□□□□ -0.82
CD44-232ENST00000531118 ANKRD35Q8N283 1001 aa9.92□□□□□ -0.82
CD44-232ENST00000531118 TTC13Q8NBP0 860 aa9.92□□□□□ -0.82
CD44-232ENST00000531118 SDR42E1Q8WUS8 393 aa9.92□□□□□ -0.82
CD44-232ENST00000531118 NUP88Q99567 741 aaPredicted RBP9.92□□□□□ -0.82
CD44-232ENST00000531118 AP5M1Q9H0R1 490 aa9.92□□□□□ -0.82
CD44-232ENST00000531118 ANTXR1Q9H6X2 564 aa9.92□□□□□ -0.82
CD44-232ENST00000531118 SUGCTQ9HAC7 445 aa9.92□□□□□ -0.82
CD44-232ENST00000531118 DCP1AQ9NPI6 582 aaPredicted RBP9.92□□□□□ -0.82
CD44-232ENST00000531118 COL4A6Q14031 1691 aa9.92□□□□□ -0.82
CD44-232ENST00000531118 MYO15AQ9UKN7 3530 aa9.91□□□□□ -0.82
CD44-232ENST00000531118 ZMYND10O75800 440 aa9.91□□□□□ -0.82
CD44-232ENST00000531118 SLC4A3P48751 1232 aa9.91□□□□□ -0.82
CD44-232ENST00000531118 ERVK-21P61565 698 aa9.91□□□□□ -0.82
CD44-232ENST00000531118 DEFB103AP81534 67 aa9.91□□□□□ -0.82
CD44-232ENST00000531118 CNTN2Q02246 1040 aa9.91□□□□□ -0.82
CD44-232ENST00000531118 PADI6Q6TGC4 694 aa9.91□□□□□ -0.82
CD44-232ENST00000531118 FBXO16Q8IX29 292 aaPredicted RBP9.91□□□□□ -0.82
CD44-232ENST00000531118 CPXCR1Q8N123 301 aa9.91□□□□□ -0.82
CD44-232ENST00000531118 LCORLQ8N3X6 602 aa9.91□□□□□ -0.82
CD44-232ENST00000531118 PPIL4Q8WUA2 492 aaKnown RBP eCLIP9.91□□□□□ -0.82
CD44-232ENST00000531118 CCDC17Q96LX7 622 aa9.91□□□□□ -0.82
CD44-232ENST00000531118 TGS1Q96RS0 853 aaKnown RBP9.91□□□□□ -0.82
CD44-232ENST00000531118 FTOQ9C0B1 505 aaKnown RBP eCLIP9.91□□□□□ -0.82
CD44-232ENST00000531118 PRKAG3Q9UGI9 489 aa9.91□□□□□ -0.82
CD44-232ENST00000531118 FBXO40Q9UH90 709 aa9.91□□□□□ -0.82
CD44-232ENST00000531118 NOB1Q9ULX3 412 aaKnown RBP9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms